SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_092900421
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Mid-gestation placenta
Biosample name: trophoblast__CytT
Genomic region: chr19:39428260-39448849
Size: 20589
Super-enhancer rank 421
Number of SE elements: 11
ChIP density(Case|Control): 23529.1092|2252.4366
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RPS16 ;
ROSE Overlap RPS16 ; SUPT5H ; PLEKHG2 ;
ROSE Proximal TIMM50 ; ZFP36 ; MED29 ; PAF1 ; MIR4530 ;
ROSE Closest RPS16 ;
Lasso PAF1 ; PLEKHG2 ; TIMM50 ; LGALS13 ; ZFP36 ; EID2 ; SAMD4B ; IFNL1 ; SUPT5H ; AC011500.1 ;
PreSTIGE ;
ABC ;
BETA ZFP36 ; SUPT5H ; PAF1 ; TIMM50 ; RPS16 ; SELV ; SAMD4B ; MIR4530 ; MED29 ; EID2B ; DLL3 ; PLEKHG2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_092900421 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers