SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000131149
Gene: GSE1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:85169525-85676204 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000100019 chr16:85290561-85494916 Sample_04_0001 Blood heat shocked K562 19 29 7967 128 8 400 77 MIR5093,LINC00311,GSE1
SE_02_115900003 chr16:85414810-85683277 Sample_02_1159 Mammary gland MCF7 3 84 11376 280 5 1097 3047 GSE1,GINS2,C16orf74,KIAA0182,C16ORF74
SE_02_052600043 chr16:85415521-85493320 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 43 27 3159 94 3 232 0 MIR5093,GSE1,C16orf74
SE_02_107600058 chr16:85416132-85474516 Sample_02_1076 Mammary gland MCF7_TET2WT-E2 58 12 2315 42 3 162 0 MIR5093,GSE1,C16orf74
SE_02_066700129 chr16:85416175-85475431 Sample_02_0667 Mammary gland MCF7_FA 129 17 2366 44 3 160 0 MIR5093,GSE1,C16orf74
SE_02_077700047 chr16:85416177-85475826 Sample_02_0777 Mammary gland MCF7_TAMR 47 7 2378 44 3 159 0 MIR5093,GSE1,C16orf74
SE_02_052700018 chr16:85416190-85528650 Sample_02_0527 Mammary gland MCF7_WT 18 49 4638 119 3 329 0 GSE1,C16orf74
SE_02_157700025 chr16:85416200-85495107 Sample_02_1577 Mammary gland MCF7_DAC 25 27 3208 95 3 202 0 MIR5093,GSE1,C16orf74
SE_02_157800024 chr16:85416216-85495338 Sample_02_1578 Mammary gland MCF7_DAC+455 24 32 3215 96 3 199 0 MIR5093,GSE1,C16orf74
SE_02_157600016 chr16:85416218-85495097 Sample_02_1576 Mammary gland MCF7_CPI-455 16 18 3207 95 3 199 0 MIR5093,GSE1,C16orf74
SE_02_157500013 chr16:85416227-85494996 Sample_02_1575 Mammary gland MCF7_Mock 13 24 3201 95 3 198 0 MIR5093,GSE1,C16orf74
SE_01_011300013 chr16:85416764-85493363 Sample_01_0113 Mammary gland MCF-7 13 22 3117 94 3 195 0 MIR5093,GSE1,C16orf74
SE_02_107700086 chr16:85435748-85475583 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 86 9 1547 41 3 101 0 MIR5093,GSE1,C16orf74
SE_02_122901236 chr16:85435929-85465261 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1236 11 1123 31 2 93 0 MIR5093,GSE1
SE_02_115100157 chr16:85456706-85476385 Sample_02_1151 Mammary gland MCF-7_UNTR 157 1 766 21 1 34 0 GSE1,C16orf74
SE_02_098801086 chr16:85460061-85475270 Sample_02_0988 Blood K562_EPZ 1086 3 579 17 1 33 0 GSE1
SE_02_084400051 chr16:85461866-85473010 Sample_02_0844 Mammary gland MCF-7_DMSO_sgARID1A-1_KO 51 7 417 11 1 33 0 GSE1,C16orf74
SE_02_123800033 chr16:85509660-85663971 Sample_02_1238 Skin MS1_virus_positive 33 60 6458 111 2 707 1851 GSE1,GINS2,C16orf74
SE_02_093000040 chr16:85513028-85574870 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 40 30 2288 45 0 299 0 GSE1,GINS2
SE_02_087500067 chr16:85513036-85676745 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 67 66 7019 147 2 754 2771 GSE1,GINS2
SE_02_047700087 chr16:85513915-85578337 Sample_02_0477 Colon intestinal epithelial organoids_139a 87 22 2362 45 0 321 0 GSE1,GINS2
SE_02_098800008 chr16:85515246-85574973 Sample_02_0988 Blood K562_EPZ 8 22 2206 42 0 296 0 GSE1
SE_02_098700002 chr16:85515316-85616742 Sample_02_0987 Blood K562_Control_1 2 32 3734 48 2 506 312 GSE1
SE_02_084100059 chr16:85515850-85579831 Sample_02_0841 Blood THP-1_untr 59 16 2347 42 0 323 0 GSE1
SE_02_046100046 chr16:85522680-85573010 Sample_02_0461 Blood MV-4-11-B cells 46 16 1846 41 0 270 0 GSE1
SE_02_122900007 chr16:85522883-85685361 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 7 71 6997 169 2 742 3047 GSE1,GINS2
SE_02_109900001 chr16:85522892-85620602 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 1 33 3628 47 2 491 312 GSE1
SE_04_000100001 chr16:85523065-85654711 Sample_04_0001 Blood heat shocked K562 1 17 5459 90 2 571 738 GSE1,GINS2
SE_02_113000002 chr16:85523277-85623465 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 2 33 3740 47 2 491 312 GSE1
SE_04_000200002 chr16:85523307-85626586 Sample_04_0002 Blood cold shocked K562 2 13 3898 48 2 497 312 GSE1
SE_02_103300003 chr16:85523388-85621367 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 3 24 3640 47 2 491 312 GSE1
SE_02_111600001 chr16:85523406-85621523 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 1 28 3649 47 2 491 312 GSE1
SE_02_054500012 chr16:85523510-85574942 Sample_02_0545 Bone marrow K562 WT 12 14 1878 41 0 272 0 GSE1
SE_02_054600004 chr16:85528582-85574925 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 4 14 1679 39 0 268 0 GSE1
SE_02_142400001 chr16:85535039-85653571 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 1 43 4905 79 2 532 598 GSE1,GINS2
SE_02_142200012 chr16:85535073-85574151 Sample_02_1422 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_0h 12 22 1398 30 0 235 0 GSE1
SE_00_003100394 chr16:85543910-85580913 Sample_00_0031 Placenta placenta 394 7 1322 15 0 246 0 KIAA0182,GINS2,GSE1
SE_02_092900543 chr16:85545308-85570305 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 543 12 876 14 0 207 0 GSE1,GINS2
SE_02_054700009 chr16:85552747-85571948 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 9 8 657 5 0 199 0 GSE1
SE_02_142901137 chr16:85553000-85579914 Sample_02_1429 Blood GM12878_WT 1137 7 936 5 0 208 0 GSE1
SE_00_005500689 chr16:85553090-85575093 Sample_00_0055 Spleen spleen 34y 689 16 771 5 0 182 0 GSE1
SE_02_142300009 chr16:85553480-85589166 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 9 16 1256 7 1 232 0 GSE1
Genomic distribution of SEs associated with GSE1
Genome Browser

The strength of the tissue affected by the gene

Expression of GSE1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)