Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000174177
Gene: CTU2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:88706483-88715396 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_062200535 chr16:88680570-88706337 Sample_02_0622 Blood EOL1_Naive 535 17 1116 101 2 90 1720 SNAI3-AS1,RNF166,SNAI3,IL17C,CTU2,MIR4722,LOC100289580,CYBA,MVD,LOC339059,CDT1
SE_02_152900386 chr16:88688891-88707885 Sample_02_1529 Peripheral blood neutrophils_0BC75 386 1 884 93 4 57 1393 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_153000595 chr16:88689324-88709554 Sample_02_1530 Peripheral blood neutrophils_0BA0X 595 1 967 99 3 57 1393 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_153100554 chr16:88691927-88706840 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 554 1 721 72 1 55 1320 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_092700477 chr16:88697312-88707000 Sample_02_0927 Peripheral blood neutrophils_US 477 1 489 51 0 52 1133 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_098900895 chr16:88737210-88785034 Sample_02_0989 Kidney kidney cortex_WT 895 16 2328 203 15 101 2233 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,SLC22A31,MVD,CBFA2T3
SE_02_107700076 chr16:88737575-88785982 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 76 14 2335 201 15 116 2207 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_157500038 chr16:88737628-88785951 Sample_02_1575 Mammary gland MCF7_Mock 38 10 2333 201 15 116 2200 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_107600043 chr16:88737629-88785989 Sample_02_1076 Mammary gland MCF7_TET2WT-E2 43 11 2334 201 15 116 2200 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_157800030 chr16:88737675-88786001 Sample_02_1578 Mammary gland MCF7_DAC+455 30 14 2328 201 15 116 2191 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_157700031 chr16:88737752-88785956 Sample_02_1577 Mammary gland MCF7_DAC 31 14 2325 201 15 116 2170 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_052600192 chr16:88738956-88785680 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 192 20 2244 193 15 100 1883 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_052700063 chr16:88739376-88785644 Sample_02_0527 Mammary gland MCF7_WT 63 16 2227 192 15 97 1768 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_01_010900316 chr16:88745970-88785830 Sample_01_0109 Colon transverse colon_54y 316 17 1900 149 10 89 237 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,SLC22A31,ACSF3,LOC100129697,MVD,CBFA2T3,SNAI3
SE_02_077700178 chr16:88746502-88785558 Sample_02_0777 Mammary gland MCF7_TAMR 178 11 1868 145 10 80 237 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,GALNS,TRAPPC2L
SE_02_157600031 chr16:88753281-88785907 Sample_02_1576 Mammary gland MCF7_CPI-455 31 4 1484 120 8 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,GALNS,TRAPPC2L
SE_02_115900015 chr16:88753309-88786458 Sample_02_1159 Mammary gland MCF7 15 1 1497 120 8 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,GALNS,TRAPPC2L
SE_02_115100089 chr16:88753413-88776984 Sample_02_1151 Mammary gland MCF-7_UNTR 89 1 1123 82 4 35 0 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,GALNS,TRAPPC2L
SE_02_093800051 chr16:88753951-88785685 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 51 9 1454 118 8 80 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,MVD,TRAPPC2L
SE_02_113800787 chr16:88753996-88785966 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 787 5 1457 118 8 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,MVD,TRAPPC2L
SE_02_113700729 chr16:88754020-88785846 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 729 9 1451 118 8 80 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,MVD,TRAPPC2L
SE_02_093600120 chr16:88754239-88785891 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 120 9 1442 116 8 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,MVD,TRAPPC2L
SE_02_113900600 chr16:88754336-88785981 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 600 6 1443 116 8 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,MVD,TRAPPC2L
SE_02_077800262 chr16:88754558-88773623 Sample_02_0778 Mammary gland MCF7_FASR 262 5 929 65 1 26 0 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,GALNS,TRAPPC2L
SE_02_093001579 chr16:88755072-88791058 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1579 21 1566 125 10 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,GALNS,LOC100129697,MVD,TRAPPC2L
SE_02_047800466 chr16:88755848-88794034 Sample_02_0478 Colon normal colon mucosa 466 17 1641 129 10 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,SLC22A31,ACSF3,LOC100129697,MVD,CBFA2T3,SNAI3
SE_02_093500413 chr16:88763116-88782919 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 413 4 922 70 7 38 0 PIEZO1,CDT1,LOC339059,MIR4722,LOC100289580,APRT,CTU2,RNF166,MVD,TRAPPC2L
SE_02_116300090 chr16:88768120-88783253 Sample_02_1163 Embryonic kidney HEK293 no dox 90 8 691 55 8 30 0 PIEZO1,LOC339059,CDT1,APRT,LOC100289580,CTU2,RNF166,ZC3H18,MVD,SNAI3
SE_01_011200285 chr16:88768196-88785921 Sample_01_0112 Embryonic kidney HEK293_encode 285 7 764 63 8 60 133 PIEZO1,LOC339059,CDT1,APRT,LOC100289580,CTU2,RNF166,ZC3H18,MVD,SNAI3
SE_02_111400087 chr16:88769557-88786036 Sample_02_1114 Embryonic kidney HEK293 87 9 700 54 7 56 133 PIEZO1,LOC339059,CDT1,APRT,LOC100289580,CTU2,RNF166,ZC3H18,MVD,SNAI3

Genomic distribution of SEs associated with CTU2

The strength of the tissue affected by the gene


Expression of CTU2