SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000174177
Gene: CTU2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:88706483-88715396 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_062200535 chr16:88680570-88706337 Sample_02_0622 Blood EOL1_Naive 535 17 1116 101 2 90 1720 SNAI3-AS1,RNF166,SNAI3,IL17C,CTU2,MIR4722,LOC100289580,CYBA,MVD,LOC339059,CDT1
SE_02_152900386 chr16:88688891-88707885 Sample_02_1529 Peripheral blood neutrophils_0BC75 386 1 884 93 4 57 1393 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_153000595 chr16:88689324-88709554 Sample_02_1530 Peripheral blood neutrophils_0BA0X 595 1 967 99 3 57 1393 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_153100554 chr16:88691927-88706840 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 554 1 721 72 1 55 1320 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_092700477 chr16:88697312-88707000 Sample_02_0927 Peripheral blood neutrophils_US 477 1 489 51 0 52 1133 RNF166,CTU2,MIR4722,SNAI3-AS1,SNAI3,LOC100289580,CYBA,MVD,LOC339059,IL17C,TRAPPC2L
SE_02_098900895 chr16:88737210-88785034 Sample_02_0989 Kidney kidney cortex_WT 895 16 2328 203 15 101 2233 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,SLC22A31,MVD,CBFA2T3
SE_02_107700076 chr16:88737575-88785982 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 76 14 2335 201 15 116 2207 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_157500038 chr16:88737628-88785951 Sample_02_1575 Mammary gland MCF7_Mock 38 10 2333 201 15 116 2200 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_107600043 chr16:88737629-88785989 Sample_02_1076 Mammary gland MCF7_TET2WT-E2 43 11 2334 201 15 116 2200 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_157800030 chr16:88737675-88786001 Sample_02_1578 Mammary gland MCF7_DAC+455 30 14 2328 201 15 116 2191 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_157700031 chr16:88737752-88785956 Sample_02_1577 Mammary gland MCF7_DAC 31 14 2325 201 15 116 2170 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_052600192 chr16:88738956-88785680 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 192 20 2244 193 15 100 1883 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_02_052700063 chr16:88739376-88785644 Sample_02_0527 Mammary gland MCF7_WT 63 16 2227 192 15 97 1768 LOC339059,LOC100289580,PIEZO1,CDT1,CTU2,RNF166,MIR4722,APRT,GALNS,TRAPPC2L
SE_01_010900316 chr16:88745970-88785830 Sample_01_0109 Colon transverse colon_54y 316 17 1900 149 10 89 237 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,SLC22A31,ACSF3,LOC100129697,MVD,CBFA2T3,SNAI3
SE_02_077700178 chr16:88746502-88785558 Sample_02_0777 Mammary gland MCF7_TAMR 178 11 1868 145 10 80 237 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,GALNS,TRAPPC2L
SE_02_157600031 chr16:88753281-88785907 Sample_02_1576 Mammary gland MCF7_CPI-455 31 4 1484 120 8 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,GALNS,TRAPPC2L
SE_02_115900015 chr16:88753309-88786458 Sample_02_1159 Mammary gland MCF7 15 1 1497 120 8 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,GALNS,TRAPPC2L
SE_02_115100089 chr16:88753413-88776984 Sample_02_1151 Mammary gland MCF-7_UNTR 89 1 1123 82 4 35 0 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,GALNS,TRAPPC2L
SE_02_093800051 chr16:88753951-88785685 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 51 9 1454 118 8 80 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,MVD,TRAPPC2L
SE_02_113800787 chr16:88753996-88785966 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 787 5 1457 118 8 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,MVD,TRAPPC2L
SE_02_113700729 chr16:88754020-88785846 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 729 9 1451 118 8 80 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,MVD,TRAPPC2L
SE_02_093600120 chr16:88754239-88785891 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 120 9 1442 116 8 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,MVD,TRAPPC2L
SE_02_113900600 chr16:88754336-88785981 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 600 6 1443 116 8 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,MVD,TRAPPC2L
SE_02_077800262 chr16:88754558-88773623 Sample_02_0778 Mammary gland MCF7_FASR 262 5 929 65 1 26 0 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,GALNS,TRAPPC2L
SE_02_093001579 chr16:88755072-88791058 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1579 21 1566 125 10 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,GALNS,LOC100129697,MVD,TRAPPC2L
SE_02_047800466 chr16:88755848-88794034 Sample_02_0478 Colon normal colon mucosa 466 17 1641 129 10 82 133 PIEZO1,CDT1,CTU2,LOC339059,RNF166,MIR4722,LOC100289580,APRT,SLC22A31,ACSF3,LOC100129697,MVD,CBFA2T3,SNAI3
SE_02_093500413 chr16:88763116-88782919 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 413 4 922 70 7 38 0 PIEZO1,CDT1,LOC339059,MIR4722,LOC100289580,APRT,CTU2,RNF166,MVD,TRAPPC2L
SE_02_116300090 chr16:88768120-88783253 Sample_02_1163 Embryonic kidney HEK293 no dox 90 8 691 55 8 30 0 PIEZO1,LOC339059,CDT1,APRT,LOC100289580,CTU2,RNF166,ZC3H18,MVD,SNAI3
SE_01_011200285 chr16:88768196-88785921 Sample_01_0112 Embryonic kidney HEK293_encode 285 7 764 63 8 60 133 PIEZO1,LOC339059,CDT1,APRT,LOC100289580,CTU2,RNF166,ZC3H18,MVD,SNAI3
SE_02_111400087 chr16:88769557-88786036 Sample_02_1114 Embryonic kidney HEK293 87 9 700 54 7 56 133 PIEZO1,LOC339059,CDT1,APRT,LOC100289580,CTU2,RNF166,ZC3H18,MVD,SNAI3
Genomic distribution of SEs associated with CTU2
Genome Browser

The strength of the tissue affected by the gene

Expression of CTU2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)