SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000163125
Gene: RPRD2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:150363091-150476566 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103500373 chr1:150297366-150430672 Sample_02_1035 Mammary gland HCC70_Vehicle 373 51 3347 551 8 212 1365 PRPF3,RPRD2,MRPS21,CIART,C1ORF54,CA14,APH1A
SE_02_104301759 chr1:150336469-150397329 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1759 18 1511 233 4 112 645 PRPF3,RPRD2,MRPS21
SE_02_046501286 chr1:150346900-150366270 Sample_02_0465 Adipose subcutaneous adipocytes 1286 5 488 74 1 59 245 PRPF3,RPRD2
SE_02_098900865 chr1:150348026-150390465 Sample_02_0989 Kidney kidney cortex_WT 865 17 1035 157 2 67 245 PRPF3,RPRD2
SE_02_122900856 chr1:150350671-150389983 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 856 14 949 140 2 65 215 PRPF3,RPRD2
SE_02_101701682 chr1:150352023-150376194 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1682 5 585 74 0 65 215 PRPF3,RPRD2
SE_02_074600901 chr1:150352042-150389769 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 901 11 916 137 1 65 215 PRPF3,RPRD2
SE_02_096500486 chr1:150352493-150366229 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 486 2 338 45 0 56 215 PRPF3,RPRD2
SE_02_080800140 chr1:150354661-150438756 Sample_02_0808 Ovary RMG1_ARID1A KO 140 67 2146 347 5 60 174 RPRD2,PRPF3,TARS2
SE_02_077501584 chr1:150357615-150370047 Sample_02_0775 Pancreas EndoC-BH1_SE 1584 5 297 38 0 54 142 RPRD2,PRPF3
SE_02_040400451 chr1:150360770-150367158 Sample_02_0404 Mammary gland ZR-75-1_2 451 2 163 17 0 52 142 RPRD2,PRPF3
SE_01_001200465 chr1:150361016-150367684 Sample_01_0012 Lung A549_dexamethasone_1h 465 1 169 19 0 53 142 RPRD2,PRPF3
SE_02_077900265 chr1:150361056-150374806 Sample_02_0779 Lymphoma U2932 265 4 344 36 0 54 142 RPRD2,PRPF3
SE_02_151400715 chr1:150361516-150371840 Sample_02_1514 Lung Differentiated AT1-like cells 715 3 254 29 0 54 142 RPRD2,PRPF3
SE_02_035700051 chr1:150361809-150376646 Sample_02_0357 Colon Colo320 51 5 358 41 0 57 142 RPRD2,PRPF3
SE_02_031300315 chr1:150361923-150367684 Sample_02_0313 Neuroblastoma SK-N-DZ 315 1 154 19 0 53 142 RPRD2,PRPF3
SE_02_031000558 chr1:150361926-150368393 Sample_02_0310 Neuroblastoma SJNB8 558 1 171 22 0 53 142 RPRD2,PRPF3
SE_02_030400571 chr1:150361959-150367561 Sample_02_0304 Neuroblastoma N206 571 1 149 18 0 53 142 RPRD2,PRPF3
SE_02_076500461 chr1:150362020-150368059 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 461 2 161 20 0 53 142 RPRD2,PRPF3
SE_01_003900607 chr1:150362060-150367173 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 607 1 139 16 0 52 142 RPRD2,PRPF3
SE_02_068300177 chr1:150362127-150387898 Sample_02_0683 Lung DMS114 177 6 630 92 1 57 142 RPRD2,PRPF3
SE_02_066300866 chr1:150362165-150366355 Sample_02_0663 Thyroid TT 866 1 118 13 0 48 142 RPRD2,PRPF3
SE_02_062300269 chr1:150362207-150367100 Sample_02_0623 Mammary gland TAMR_E2 269 1 139 16 0 51 142 RPRD2,PRPF3
SE_02_032800505 chr1:150362218-150366574 Sample_02_0328 Embryo H9_naive 505 1 125 14 0 49 142 RPRD2,PRPF3
SE_02_033900146 chr1:150362257-150367834 Sample_02_0339 Neuroblastoma NGP 146 1 156 20 0 53 142 RPRD2,PRPF3
SE_02_022000123 chr1:150362277-150367851 Sample_02_0220 Brain BE2C_1 123 1 156 20 0 53 142 RPRD2,PRPF3
SE_02_068701314 chr1:150362299-150367099 Sample_02_0687 Lung NCI-H146_no infection 1314 2 138 16 0 51 142 RPRD2,PRPF3
SE_02_067201207 chr1:150362303-150367022 Sample_02_0672 Endometrium endometrium cancer_DSG 1207 1 136 15 0 51 142 RPRD2,PRPF3
SE_02_148100834 chr1:150362306-150376820 Sample_02_1481 Bone MIC 834 4 359 40 0 57 142 RPRD2,PRPF3
SE_02_058001113 chr1:150362332-150373952 Sample_02_0580 Blood HEL_sgSIK3e4 1113 4 304 35 0 54 142 RPRD2,PRPF3
SE_02_017000533 chr1:150362339-150390328 Sample_02_0170 Prostate LNCaP_R1881_DOX 533 4 689 104 1 57 142 RPRD2,PRPF3
SE_02_062400256 chr1:150362359-150366747 Sample_02_0624 Mammary gland TAMR_VEH 256 1 129 14 0 49 142 RPRD2,PRPF3
SE_02_016600562 chr1:150362375-150367597 Sample_02_0166 Mammary gland HCC1954_Parental 562 1 147 18 0 53 142 RPRD2,PRPF3
SE_02_016700572 chr1:150362375-150367597 Sample_02_0167 Mammary gland HCC1954_LCC2 572 1 147 18 0 53 142 RPRD2,PRPF3
SE_02_007500382 chr1:150362393-150366606 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 382 1 123 14 0 49 142 RPRD2,PRPF3
SE_02_074900662 chr1:150362402-150370110 Sample_02_0749 Mammary gland HCC1599_GSI 662 3 199 24 0 54 142 RPRD2,PRPF3
SE_02_054500937 chr1:150362416-150367385 Sample_02_0545 Bone marrow K562 WT 937 1 141 16 0 53 142 RPRD2,PRPF3
SE_02_081700805 chr1:150362440-150367028 Sample_02_0817 Ovary Epithelial ovarian cancer 805 1 135 15 0 51 142 RPRD2,PRPF3
SE_00_004300790 chr1:150362441-150366453 Sample_00_0043 Stomach stomach_96d 790 1 118 13 0 49 142 RPRD2,PRPF3
SE_02_147800573 chr1:150362441-150367911 Sample_02_1478 Bone EW-3 573 1 153 20 0 53 142 RPRD2,PRPF3
SE_02_061700854 chr1:150362459-150367541 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 854 1 142 17 0 53 142 RPRD2,PRPF3
SE_02_074800685 chr1:150362474-150370267 Sample_02_0748 Mammary gland HCC1599_WO 685 2 201 25 0 54 142 RPRD2,PRPF3
SE_02_030500622 chr1:150362483-150367690 Sample_02_0305 Neuroblastoma SH-EP 622 1 146 18 0 53 142 RPRD2,PRPF3
SE_02_057601116 chr1:150362495-150373665 Sample_02_0576 Blood HEL_sgLKB1e2 1116 3 296 35 0 54 142 RPRD2,PRPF3
SE_01_010100954 chr1:150362504-150369362 Sample_01_0101 Pancreas pancreas_54y 954 2 180 24 0 54 142 RPRD2,PRPF3
SE_02_129000366 chr1:150362523-150366796 Sample_02_1290 Lung NCI-H69_p8-15 366 1 128 14 0 49 142 RPRD2,PRPF3
SE_01_003300218 chr1:150362527-150366526 Sample_01_0033 Embryo H9 218 1 119 14 0 49 142 RPRD2,PRPF3
SE_00_003901097 chr1:150362537-150367022 Sample_00_0039 Spleen spleen_3y 1097 1 133 15 0 51 142 RPRD2,PRPF3
SE_02_143201423 chr1:150362543-150376809 Sample_02_1432 Bone A673 STAG2 WT 1423 3 355 40 0 57 142 RPRD2,PRPF3
SE_02_062700326 chr1:150362550-150367209 Sample_02_0627 Mammary gland WS8_VEH 326 1 135 15 0 52 142 RPRD2,PRPF3
SE_02_051100370 chr1:150362570-150367142 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 370 1 135 15 0 52 142 RPRD2,PRPF3
SE_02_146001016 chr1:150362586-150377551 Sample_02_1460 Blood Mutz-3 1016 2 386 45 0 57 142 RPRD2,PRPF3
SE_02_067401073 chr1:150362597-150366621 Sample_02_0674 Endometrium E1_FA 1073 1 121 13 0 49 142 RPRD2,PRPF3
SE_00_002000975 chr1:150362600-150371714 Sample_00_0020 Large intestine large-intestine_108d 975 2 241 27 0 54 142 RPRD2,PRPF3
SE_02_006401012 chr1:150362604-150367411 Sample_02_0064 Embryo DN-Early_G1 1012 1 139 15 0 53 142 RPRD2,PRPF3
SE_02_062500344 chr1:150362605-150367198 Sample_02_0625 Mammary gland WS8_4OHT 344 1 135 15 0 52 142 RPRD2,PRPF3
SE_02_148000591 chr1:150362622-150377017 Sample_02_1480 Bone MHH-ES-1 591 4 357 39 0 57 142 RPRD2,PRPF3
SE_02_050100389 chr1:150362623-150367418 Sample_02_0501 Blood HL-60_CTRL 389 1 140 16 0 53 142 RPRD2,PRPF3
SE_02_148501047 chr1:150362636-150376711 Sample_02_1485 Bone SK-ES-1 1047 2 353 39 0 57 142 RPRD2,PRPF3
SE_02_081901087 chr1:150362637-150367473 Sample_02_0819 Ovary Mucinous ovarian cancer 1087 1 141 16 0 53 142 RPRD2,PRPF3
SE_02_143301548 chr1:150362637-150376306 Sample_02_1433 Bone A673 STAG2 null 1548 4 347 39 0 57 142 RPRD2,PRPF3
SE_02_085400724 chr1:150362651-150366726 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 724 1 124 13 0 49 142 RPRD2,PRPF3
SE_00_001800295 chr1:150362676-150366667 Sample_00_0018 Dermal fibroblasts iPS-18axian 295 1 120 13 0 49 142 RPRD2,PRPF3
SE_00_002500877 chr1:150362676-150367290 Sample_00_0025 Muscle of leg muscle-of-leg 877 1 135 15 0 53 142 RPRD2,PRPF3
SE_02_055500758 chr1:150362677-150367445 Sample_02_0555 Other HAP1_WT 758 1 139 16 0 53 142 RPRD2,PRPF3
SE_01_004100788 chr1:150362691-150370738 Sample_01_0041 Skin keratinocyte 788 2 206 24 0 54 142 RPRD2,PRPF3
SE_00_003600991 chr1:150362692-150371400 Sample_00_0036 Small intestine small-intestine_108days 991 2 227 25 0 54 142 RPRD2,PRPF3
SE_02_148300716 chr1:150362696-150370475 Sample_02_1483 Bone RD-ES 716 2 204 24 0 54 142 RPRD2,PRPF3
SE_00_001001162 chr1:150362697-150365619 Sample_00_0010 Embryo endodermal-cell 1162 1 87 10 0 48 142 RPRD2,PRPF3
SE_02_042800682 chr1:150362707-150371707 Sample_02_0428 Kidney 12364284_VHL- 682 2 239 27 0 54 142 RPRD2,PRPF3
SE_02_004600361 chr1:150362708-150365823 Sample_02_0046 Embryo endodermal CyT49_ES_D10 361 2 94 10 0 48 142 RPRD2,PRPF3
SE_02_077800306 chr1:150362710-150366346 Sample_02_0778 Mammary gland MCF7_FASR 306 1 112 12 0 48 142 RPRD2,PRPF3
SE_00_003800607 chr1:150362722-150367144 Sample_00_0038 Spinal cord spinal-cord_108d 607 1 133 15 0 52 142 RPRD2,PRPF3
SE_02_137100940 chr1:150362733-150367005 Sample_02_1371 Pancreas Patu899S-untreated 940 1 131 14 0 51 142 RPRD2,PRPF3
SE_02_004500809 chr1:150362747-150365547 Sample_02_0045 Embryo endodermal CyT49_ES_D7 809 1 86 10 0 48 142 RPRD2,PRPF3
SE_02_057800790 chr1:150362748-150367065 Sample_02_0578 Blood MOLM-13_sgSIK3e4 790 1 133 15 0 51 142 RPRD2,PRPF3
SE_02_070100411 chr1:150362751-150366259 Sample_02_0701 Bone David_TC32 411 1 108 12 0 48 142 RPRD2,PRPF3
SE_02_128300514 chr1:150362760-150366777 Sample_02_1283 Lung NCI-H2107_p8-15 514 1 124 13 0 49 142 RPRD2,PRPF3
SE_02_050900283 chr1:150362781-150366937 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 283 2 129 13 0 49 142 RPRD2,PRPF3
SE_02_139600100 chr1:150362803-150367566 Sample_02_1396 Colon COLO320HSR_DMSO 100 1 140 15 0 53 142 RPRD2,PRPF3
SE_02_115800151 chr1:150362842-150391549 Sample_02_1158 Mammary gland MCF7_siYTHDC1_E2 151 5 709 110 1 57 142 RPRD2,PRPF3
SE_02_139500081 chr1:150362852-150375400 Sample_02_1395 Colon COLO320-DM_DMSO 81 3 326 36 0 54 142 RPRD2,PRPF3
SE_02_134000746 chr1:150362858-150368202 Sample_02_1340 Blood acute myeloid leukemia 746 2 154 18 0 53 142 RPRD2,PRPF3
SE_02_143000691 chr1:150362861-150366833 Sample_02_1430 Blood Kasumi-3_mock-infected 691 2 126 13 0 49 142 RPRD2,PRPF3
SE_01_004200224 chr1:150362883-150367502 Sample_01_0042 Haematopoietic and lymphoid tissue KMS-11 224 1 138 15 0 53 142 RPRD2,PRPF3
SE_00_005500851 chr1:150362910-150366232 Sample_00_0055 Spleen spleen 34y 851 1 105 11 0 48 142 RPRD2,PRPF3
SE_02_153200703 chr1:150362976-150370937 Sample_02_1532 Mammary gland MCF10A 703 2 210 22 0 53 142 RPRD2,PRPF3
SE_02_057500759 chr1:150362977-150367404 Sample_02_0575 Blood MOLM13_sgLKB1e2 759 1 132 13 0 52 142 RPRD2,PRPF3
SE_02_051000374 chr1:150362987-150367096 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 374 2 127 13 0 50 142 RPRD2,PRPF3
SE_02_064601253 chr1:150363004-150366298 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1253 1 105 10 0 47 142 RPRD2,PRPF3
SE_02_122000153 chr1:150363025-150367184 Sample_02_1220 Bone marrow JJN3 153 1 126 12 0 51 142 RPRD2,PRPF3
SE_02_064501934 chr1:150363054-150366475 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1934 1 108 9 0 48 142 RPRD2,PRPF3
SE_02_145201301 chr1:150363076-150367257 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 1301 1 124 10 0 52 142 RPRD2,PRPF3
SE_02_079800328 chr1:150363217-150366205 Sample_02_0798 Brain 1919 328 1 93 7 0 47 142 RPRD2,PRPF3
SE_02_020700617 chr1:150363330-150366533 Sample_02_0207 Stomach FU97 617 1 103 7 0 48 142 RPRD2,PRPF3
SE_01_011200544 chr1:150363553-150366280 Sample_01_0112 Embryonic kidney HEK293_encode 544 1 91 6 0 47 142 RPRD2,PRPF3
SE_02_121900418 chr1:150364097-150367281 Sample_02_1219 Bone marrow H929 418 1 86 7 0 47 142 RPRD2,PRPF3
SE_02_086100306 chr1:150364104-150366702 Sample_02_0861 iPSCs SAH_WT 306 2 74 5 0 43 142 RPRD2,PRPF3
SE_02_069400158 chr1:150364104-150367099 Sample_02_0694 Lung NCI-H82_no infection 158 1 85 7 0 45 142 RPRD2,PRPF3
SE_02_064200660 chr1:150364110-150367439 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 660 2 90 8 0 47 142 RPRD2,PRPF3
SE_02_064300587 chr1:150364111-150367150 Sample_02_0643 Mammary gland MDA-MB-436 587 1 85 7 0 46 142 RPRD2,PRPF3
SE_02_122300726 chr1:150364111-150367294 Sample_02_1223 Bone marrow KMS28BM 726 1 87 7 0 47 142 RPRD2,PRPF3
SE_02_122100740 chr1:150364112-150366764 Sample_02_1221 Bone marrow KMS11 740 1 76 5 0 43 142 RPRD2,PRPF3
SE_02_096000499 chr1:150364123-150366553 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 499 2 69 5 0 42 142 RPRD2,PRPF3
SE_02_086000444 chr1:150364130-150366626 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 444 1 69 5 0 41 142 RPRD2,PRPF3
SE_02_064000697 chr1:150364131-150367163 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 697 1 83 7 0 44 142 RPRD2,PRPF3
SE_02_138600238 chr1:150364151-150367243 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 238 1 82 7 0 45 142 RPRD2,PRPF3
SE_02_077502040 chr1:150386055-150436753 Sample_02_0775 Pancreas EndoC-BH1_SE 2040 15 1314 230 4 3 32 RPRD2
Genomic distribution of SEs associated with RPRD2
Genome Browser

The strength of the tissue affected by the gene

Expression of RPRD2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)