SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000105894
Gene: PTN Gene type: protein_coding
Strand: - External links:
Genomic region: chr7:137227341-137343774 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_001500791 chr7:137109783-137152192 Sample_00_0015 Lung IMR-90 791 8 1211 47 2 63 0 PTN
SE_02_154900721 chr7:137110168-137152164 Sample_02_1549 Gastrointestinal Stromal GIST-430B 721 8 1200 47 2 62 0 LOC349160,PTN
SE_02_020901158 chr7:137125581-137152644 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1158 7 780 33 1 53 0 PTN
SE_02_005500899 chr7:137129195-137152253 Sample_02_0055 Lung IMR-90_Nutlin-3a 899 5 682 29 0 38 0 PTN
SE_02_072701164 chr7:137129722-137152077 Sample_02_0727 Fetal lung IMR90_Etoposide 1164 6 663 28 0 38 0 LOC349160,PTN
SE_02_135501092 chr7:137129967-137152082 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 1092 6 656 27 0 38 0 LOC349160,PTN
SE_02_085700038 chr7:137205577-137356895 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 38 60 4007 158 16 411 610 PTN,LOC349160
SE_02_044500095 chr7:137231856-137354979 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 95 53 3234 130 10 344 554 PTN
SE_02_085500139 chr7:137252790-137355872 Sample_02_0855 Glioblastoma Glioblastoma neurosphere cell_HF-2927 139 16 2674 122 7 317 499 PTN
SE_02_029700098 chr7:137261251-137345964 Sample_02_0297 Neuroblastoma CLB-CAR 98 7 2209 112 6 237 398 PTN
SE_02_044400232 chr7:137261450-137344299 Sample_02_0444 Bone osteosarcoma tumor P10 232 44 2161 110 6 234 398 PTN
SE_02_119600629 chr7:137262514-137355526 Sample_02_1196 Brain GBM32 629 27 2413 119 6 295 398 PTN
SE_02_117800078 chr7:137262527-137355518 Sample_02_1178 Brain GBM07 78 26 2413 119 6 295 398 PTN
SE_02_121300662 chr7:137262551-137340945 Sample_02_1213 Brain GBM31 662 23 2052 105 6 202 275 PTN
SE_02_117700154 chr7:137262557-137355718 Sample_02_1177 Brain GBM05 154 29 2417 119 6 299 398 PTN
SE_02_097900172 chr7:137265384-137355733 Sample_02_0979 Brain JN14-BS1_H3.3K27M 172 30 2340 120 6 299 398 PTN
SE_02_119300221 chr7:137265410-137355724 Sample_02_1193 Brain GBM27 221 24 2340 120 6 299 398 PTN
SE_02_118200050 chr7:137265494-137355682 Sample_02_1182 Brain GBM11 50 24 2338 119 6 297 398 PTN
SE_02_097000075 chr7:137267160-137355769 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 75 25 2289 120 6 299 398 PTN
SE_02_120300874 chr7:137274230-137336805 Sample_02_1203 Brain NB1 874 21 1635 94 5 195 275 PTN
SE_02_095800122 chr7:137274738-137355586 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 122 23 2092 113 5 294 398 PTN
SE_02_117900251 chr7:137275865-137355586 Sample_02_1179 Brain GBM08 251 14 2068 112 5 294 398 PTN
SE_02_118700114 chr7:137275889-137355742 Sample_02_1187 Brain GBM16 114 22 2073 113 5 297 398 PTN
SE_02_096900742 chr7:137275905-137329498 Sample_02_0969 Brain H3.3K27M_PL637 742 11 1399 66 5 168 275 PTN
SE_02_120401002 chr7:137275949-137337397 Sample_02_1204 Brain NB2 1002 20 1619 94 5 193 275 PTN
SE_00_003800092 chr7:137276077-137355741 Sample_00_0038 Spinal cord spinal-cord_108d 92 10 2065 113 5 290 398 PTN
SE_02_098200267 chr7:137276225-137355589 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 267 14 2056 112 5 287 398 PTN
SE_02_095300204 chr7:137276226-137355771 Sample_02_0953 Brain H3.3K27M_1840 204 19 2061 113 5 290 398 PTN
SE_02_096800112 chr7:137276245-137355779 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 112 11 2062 113 5 291 398 PTN
SE_02_119400341 chr7:137276295-137355564 Sample_02_1194 Brain GBM28 341 23 2055 112 5 287 398 PTN
SE_02_141000107 chr7:137281347-137356403 Sample_02_1410 Brain GSC6 107 18 1936 110 5 290 398 PTN
SE_02_141700273 chr7:137282140-137314014 Sample_02_1417 Brain SF7761 273 7 798 47 2 103 28 PTN
SE_02_079900332 chr7:137282981-137325906 Sample_02_0799 Brain MESMN1 332 12 1109 54 3 142 157 PTN
SE_02_059400518 chr7:137283047-137355817 Sample_02_0594 iPSC-derived neural progenitors 518 15 1887 107 4 290 398 PTN
SE_02_031900425 chr7:137286025-137344442 Sample_02_0319 Neuroblastoma NB-EBc1 425 8 1549 94 3 215 398 PTN
SE_02_031400309 chr7:137286248-137344676 Sample_02_0314 Neuroblastoma SK-N-FI 309 7 1550 94 3 213 398 PTN
SE_02_078800161 chr7:137294343-137356452 Sample_02_0788 Brain 3565 161 31 1631 95 4 268 370 PTN
SE_02_097200812 chr7:137296295-137355608 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 812 17 1556 89 3 260 370 PTN
SE_02_110900455 chr7:137296709-137340965 Sample_02_1109 Brain SK-N-FI 455 21 1181 74 3 164 247 PTN
SE_02_085400161 chr7:137298710-137356639 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 161 13 1514 87 4 257 370 PTN
SE_02_119100779 chr7:137305960-137355695 Sample_02_1191 Brain GBM25 779 13 1298 72 2 218 370 PTN
SE_02_007600371 chr7:137323302-137344285 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 371 2 552 44 1 88 323 PTN
SE_02_085600518 chr7:137327489-137356488 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 518 3 751 50 2 145 123 PTN
SE_02_121200541 chr7:137328172-137355483 Sample_02_1212 Brain GBM30 541 11 704 48 1 140 123 PTN
SE_02_096300464 chr7:137328233-137356065 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 464 3 719 49 1 145 123 PTN
SE_02_118300319 chr7:137328441-137355542 Sample_02_1183 Brain GBM12 319 12 697 48 1 136 123 PTN
SE_02_118900528 chr7:137331179-137355505 Sample_02_1189 Brain GBM22 528 6 614 43 0 123 123 PTN
SE_02_096500875 chr7:137336774-137355652 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 875 11 477 20 0 100 123 PTN
SE_02_079400236 chr7:137341558-137355614 Sample_02_0794 Brain 1552 236 3 350 12 0 95 123 PTN
SE_02_141700096 chr7:137342193-137355536 Sample_02_1417 Brain SF7761 96 3 329 10 0 86 123 PTN
SE_02_044500793 chr7:137378692-137463008 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 793 22 2444 213 6 246 438 DGKI,PTN
SE_02_085800829 chr7:137388163-137420337 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 829 7 929 57 2 91 413 DGKI,PTN
SE_02_021000772 chr7:137388233-137423745 Sample_02_0210 Lung MRC-5_N_1DPT 772 7 1040 64 2 105 413 DGKI,PTN
SE_02_085700123 chr7:137390117-137471552 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 123 15 2426 194 4 235 566 DGKI,PTN
SE_02_118700302 chr7:137393671-137462927 Sample_02_1187 Brain GBM16 302 17 2043 168 3 187 231 DGKI,PTN
SE_02_141700224 chr7:137393947-137408356 Sample_02_1417 Brain SF7761 224 6 396 21 1 52 151 DGKI,PTN
SE_02_118200055 chr7:137394412-137476302 Sample_02_1182 Brain GBM11 55 12 2414 189 4 219 424 DGKI,PTN
SE_02_085500299 chr7:137394484-137408745 Sample_02_0855 Glioblastoma Glioblastoma neurosphere cell_HF-2927 299 2 395 19 1 52 151 DGKI,PTN
SE_02_119301221 chr7:137394493-137408449 Sample_02_1193 Brain GBM27 1221 6 382 19 1 52 151 DGKI,PTN
SE_02_085600068 chr7:137394768-137463260 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 68 11 2028 166 3 187 231 DGKI,PTN
SE_02_097000126 chr7:137394865-137463309 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 126 30 2028 166 3 187 231 DGKI,PTN
SE_02_001800158 chr7:137399844-137406766 Sample_02_0018 Embryo NEC 158 1 183 7 0 23 0 DGKI,PTN
SE_02_141000537 chr7:137421077-137486159 Sample_02_1410 Brain GSC6 537 16 1886 160 3 176 253 DGKI,PTN
SE_02_074600715 chr7:137423123-137457341 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 715 20 1016 104 2 86 25 DGKI,PTN
SE_02_141700133 chr7:137432798-137462900 Sample_02_1417 Brain SF7761 133 6 851 70 2 102 25 DGKI,PTN
SE_02_094400066 chr7:137433733-137463016 Sample_02_0944 Brain TS576 66 5 827 68 2 101 25 DGKI,PTN
SE_02_085800432 chr7:137434319-137464789 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 432 5 863 66 2 105 74 DGKI,PTN
SE_02_147700517 chr7:137434648-137454093 Sample_02_1477 Bone EW-22 517 8 539 45 2 73 25 DGKI,PTN
SE_01_002300297 chr7:137438898-137457768 Sample_01_0023 Embryo cardiac-muscle-cell 297 4 513 36 2 64 25 DGKI,PTN
SE_02_074400291 chr7:137439488-137456593 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 291 6 474 36 2 57 25 DGKI,PTN
SE_02_074500373 chr7:137439491-137457394 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 373 4 492 36 2 64 25 DGKI,PTN
SE_02_038200575 chr7:137502275-137550039 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 575 8 1368 39 3 101 50 DGKI,PTN
SE_02_150600132 chr7:137507502-137545095 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 132 9 1096 32 3 63 50 DGKI,PTN
SE_02_150500294 chr7:137536150-137545452 Sample_02_1505 Brain SHEP with tetracycline inducible MYC_DOX_2HR 294 3 280 11 1 9 0 DGKI,PTN
SE_02_011001118 chr7:137563508-137593004 Sample_02_0110 Ovaries IOE11 1118 4 828 34 2 77 313 DGKI,PTN
SE_02_055700144 chr7:137564049-137592432 Sample_02_0557 iPSCs WT hiPSC#1 144 5 803 33 2 73 313 DGKI,PTN
SE_02_049900986 chr7:137567636-137592445 Sample_02_0499 Fetal lung IMR90 IR Senescence 986 6 707 27 2 62 313 DGKI,PTN
SE_02_085800522 chr7:137571578-137592530 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 522 4 576 18 2 58 279 DGKI,PTN
SE_02_050001020 chr7:137572741-137592363 Sample_02_0500 Fetal lung IMR90_#2 1020 8 539 17 2 52 268 DGKI,PTN
SE_02_020900905 chr7:137574791-137592448 Sample_02_0209 Lung MRC-5_MRC5_1DPT 905 4 477 17 2 50 239 DGKI,PTN
SE_02_048102123 chr7:137575618-137592341 Sample_02_0481 Mammary gland MDA-MB231 2123 4 454 11 2 50 239 DGKI,PTN
SE_02_071201358 chr7:137576019-137592266 Sample_02_0712 Pancreas BxPC3_sgNEG 1358 4 440 10 1 50 239 DGKI,PTN
SE_02_017100887 chr7:137576276-137592730 Sample_02_0171 Lung IMR-90_proliferating 887 2 439 10 1 54 239 DGKI,PTN
SE_02_049700133 chr7:137576975-137592991 Sample_02_0497 Fetal lung IMR90_#1 133 7 422 9 1 54 239 DGKI,PTN
SE_02_057100602 chr7:137577351-137592348 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 602 6 399 7 1 47 218 DGKI,PTN
SE_02_057200390 chr7:137577485-137592329 Sample_02_0572 Brain LN229_1_mM_glucose 390 3 397 7 1 47 214 DGKI,PTN
SE_02_057000713 chr7:137578248-137592373 Sample_02_0570 Brain LN229_10_mM_glucose 713 5 367 6 1 46 207 DGKI,PTN
SE_02_111000594 chr7:137578285-137592338 Sample_02_1110 Other HGrC1 594 3 366 6 1 46 203 DGKI,PTN
SE_01_001900811 chr7:137578353-137592584 Sample_01_0019 Brain and spinal cord astrocyte 811 2 369 6 1 48 199 DGKI,PTN
SE_02_150600515 chr7:137578382-137593118 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 515 7 379 6 1 49 198 DGKI,PTN
SE_02_152101017 chr7:137578411-137592426 Sample_02_1521 Skin A375 DMSO 1017 2 363 6 1 45 191 DGKI,PTN
SE_01_008700946 chr7:137579114-137610649 Sample_01_0087 Thyroid gland thyroid-gland 946 7 855 7 4 98 358 DGKI,PTN
SE_02_074400956 chr7:137584730-137591825 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 956 3 195 4 0 21 122 DGKI,PTN
SE_02_001000615 chr7:137656114-137683763 Sample_02_0010 Kidney A-498_emptyvector 615 5 780 1 2 66 91 DGKI,PTN
Genomic distribution of SEs associated with PTN
Genome Browser

The strength of the tissue affected by the gene

Expression of PTN

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)