SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000116117
Gene: PARD3B Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:204545475-205620162 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_055200056 chr2:204023293-204079675 Sample_02_0552 Other SYO1 shCt 56 31 1543 64 4 376 0 ICOS,PARD3B
SE_02_002700768 chr2:204108204-204117951 Sample_02_0027 Umbilical vein HUVEC_VEGF_4h 768 2 274 1 1 161 0 ICOS,PARD3B
SE_02_055600284 chr2:204108435-204116837 Sample_02_0556 iPSCs BOFS hiPSC cl1 284 1 224 1 0 158 0 ICOS,PARD3B
SE_02_058500840 chr2:204108486-204117696 Sample_02_0585 Umbilical vein HUVEC 0hour 840 9 255 1 1 159 0 ICOS,PARD3B
SE_02_083100646 chr2:204108529-204118000 Sample_02_0831 Umblical vein HUVECs_TNF0min 646 6 267 1 1 158 0 ICOS,PARD3B
SE_02_029700108 chr2:204133178-204202727 Sample_02_0297 Neuroblastoma CLB-CAR 108 9 1804 8 11 397 0 ICOS,PARD3B
SE_02_003900456 chr2:204144378-204204141 Sample_02_0039 Embryo AFG 456 9 1544 7 7 328 0 ICOS,PARD3B
SE_02_128400109 chr2:204144643-204153167 Sample_02_1284 Lung NCI-H211_p8-15 109 3 218 1 1 35 0 ICOS,PARD3B
SE_02_031400463 chr2:204145060-204199423 Sample_02_0314 Neuroblastoma SK-N-FI 463 8 1416 5 7 298 0 ICOS,PARD3B
SE_02_030400148 chr2:204168745-204206367 Sample_02_0304 Neuroblastoma N206 148 4 929 4 3 241 0 ICOS,PARD3B
SE_02_150000222 chr2:204168922-204198449 Sample_02_1500 Brain KELLY_untreat 222 8 724 2 3 191 0 ICOS,PARD3B
SE_02_101700476 chr2:204170175-204240204 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 476 18 1776 5 3 422 0 ICOS,PARD3B
SE_02_110400350 chr2:204170265-204206332 Sample_02_1104 Brain NB-69 350 10 896 4 3 223 0 ICOS,PARD3B
SE_02_101600952 chr2:204190885-204209057 Sample_02_1016 Embryo H9_Mesendoderm_24h 952 6 464 4 2 99 0 ICOS,PARD3B
SE_02_035700048 chr2:204219053-204261333 Sample_02_0357 Colon Colo320 48 14 1243 1 2 293 0 ICOS,PARD3B
SE_02_003900625 chr2:204220793-204230672 Sample_02_0039 Embryo AFG 625 2 287 1 0 73 0 ICOS,PARD3B
SE_02_029700344 chr2:204222870-204239052 Sample_02_0297 Neuroblastoma CLB-CAR 344 2 422 1 0 145 0 ICOS,PARD3B
SE_02_128400063 chr2:204224434-204241283 Sample_02_1284 Lung NCI-H211_p8-15 63 8 426 1 0 165 0 ICOS,PARD3B
SE_02_013800156 chr2:204250369-204284224 Sample_02_0138 Brain RT172 156 5 1026 2 4 299 0 PARD3B
SE_02_003900640 chr2:204251147-204313840 Sample_02_0039 Embryo AFG 640 15 1909 19 8 425 0 PARD3B
SE_02_128300317 chr2:204254374-204269604 Sample_02_1283 Lung NCI-H2107_p8-15 317 7 458 0 2 162 0 PARD3B
SE_02_055600422 chr2:204254639-204274905 Sample_02_0556 iPSCs BOFS hiPSC cl1 422 5 582 0 2 206 0 PARD3B
SE_02_101701389 chr2:204254742-204284700 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1389 9 876 2 2 265 0 PARD3B
SE_02_055700814 chr2:204255219-204281058 Sample_02_0557 iPSCs WT hiPSC#1 814 8 734 1 2 247 0 PARD3B
SE_02_055700583 chr2:204312779-204354888 Sample_02_0557 iPSCs WT hiPSC#1 583 7 1206 8 5 259 0 PARD3B
SE_02_068800012 chr2:204324743-204380683 Sample_02_0688 Lung NCI-H211_no infection 12 9 1578 1 4 349 0 PARD3B
SE_02_128400021 chr2:204324927-204372928 Sample_02_1284 Lung NCI-H211_p8-15 21 17 1347 1 4 327 0 PARD3B
SE_02_061500765 chr2:204325624-204342200 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 765 4 518 1 0 105 0 PARD3B
SE_02_031900771 chr2:204403850-204417887 Sample_02_0319 Neuroblastoma NB-EBc1 771 2 379 2 0 131 0 PARD3B
SE_02_093100429 chr2:204436785-204455365 Sample_02_0931 Embryo H9 UTXKO 429 3 490 0 0 43 0 PARD3B
SE_02_093300387 chr2:204437041-204454604 Sample_02_0933 Embryo H7 UTXKO 387 7 464 0 0 43 0 PARD3B
SE_00_001000983 chr2:204437606-204454637 Sample_00_0010 Embryo endodermal-cell 983 3 451 0 0 41 0 PARD3B
SE_02_083800077 chr2:204438302-204455260 Sample_02_0838 Embryo hNPCs_WT 77 3 446 0 0 41 0 PARD3B
SE_02_017201071 chr2:204448241-204489037 Sample_02_0172 Lung IMR-90_quiescent 1071 6 1108 2 1 179 0 PARD3B
SE_02_020901256 chr2:204448284-204472720 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1256 6 662 1 0 89 0 PARD3B
SE_02_017100998 chr2:204448904-204488686 Sample_02_0171 Lung IMR-90_proliferating 998 5 1086 2 1 179 0 PARD3B
SE_01_009500249 chr2:204449084-204454743 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 249 1 149 0 0 24 0 PARD3B
SE_02_126701604 chr2:204451083-204454820 Sample_02_1267 Bone Im-GCT-4072_G34W 1604 1 94 0 0 20 0 PARD3B
SE_02_061500107 chr2:204451565-204508015 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 107 19 1573 4 4 281 0 PARD3B
SE_02_076201730 chr2:204468854-204508802 Sample_02_0762 Podocyte podocyte_CTL 1730 8 1112 4 4 240 0 PARD3B
SE_02_082200587 chr2:204537672-204542284 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 587 1 130 0 0 20 0 PARD3B
SE_02_068800084 chr2:204543176-204576927 Sample_02_0688 Lung NCI-H211_no infection 84 8 907 1 1 114 201 PARD3B
SE_02_128400081 chr2:204543456-204552183 Sample_02_1284 Lung NCI-H211_p8-15 81 1 223 0 0 56 201 PARD3B
SE_02_154800334 chr2:204641665-204692620 Sample_02_1548 Gastrointestinal Stromal GIST-226 334 16 1353 8 1 117 31 PARD3B
SE_02_127800479 chr2:204643433-204692814 Sample_02_1278 Chordoma UCH1_DMSO_48h 479 13 1301 8 1 112 31 PARD3B
SE_02_087801524 chr2:204643893-204681698 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1524 6 1015 8 1 87 0 PARD3B
SE_02_026200448 chr2:204644309-204682597 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 448 4 1026 8 1 88 0 PARD3B
SE_02_026300964 chr2:204644788-204688383 Sample_02_0263 Osteoblastic hFOB_undifferentiated 964 6 1153 8 1 107 31 PARD3B
SE_02_026100612 chr2:204644860-204696141 Sample_02_0261 Osteoblastic hFOB_differentiated 612 5 1353 10 1 121 31 PARD3B
SE_02_093801178 chr2:204644956-204688294 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1178 6 1141 8 1 107 31 PARD3B
SE_02_116700934 chr2:204645314-204682034 Sample_02_1167 Biliary H69_TGF Vehicle_1 934 8 989 8 1 83 0 PARD3B
SE_02_017700317 chr2:204654242-204683284 Sample_02_0177 Urinary bladder J82 317 3 798 2 1 82 0 PARD3B
SE_02_132800297 chr2:204654412-204681724 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 297 13 748 2 1 81 0 PARD3B
SE_02_125900845 chr2:204654413-204682891 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 845 9 781 2 1 82 0 PARD3B
SE_02_093700551 chr2:204654432-204694001 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 551 12 1054 3 1 108 31 PARD3B
SE_02_116800920 chr2:204654699-204682382 Sample_02_1168 Biliary H69_TGF Vehicle_2 920 7 766 2 1 81 0 PARD3B
SE_02_031700979 chr2:204662756-204683334 Sample_02_0317 Neuroblastoma GICAN 979 2 587 1 0 53 0 PARD3B
SE_02_010800256 chr2:204662840-204705526 Sample_02_0108 Fallopian tube FT246 256 6 1164 4 0 144 31 PARD3B
SE_01_006300492 chr2:204663507-204682537 Sample_01_0063 Skeletal muscle skeletal-muscle-myoblast 492 3 540 1 0 51 0 PARD3B
SE_01_011500858 chr2:204663564-204682243 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 858 4 532 1 0 51 0 PARD3B
SE_02_003000173 chr2:204663583-204680848 Sample_02_0030 Kidney human kidney proximal tubule cells 173 2 487 1 0 46 0 PARD3B
SE_02_156900622 chr2:204663918-204693207 Sample_02_1569 Endothelial Endothelial cells 622 7 794 1 0 73 31 PARD3B
SE_02_093601092 chr2:204663972-204682059 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 1092 4 519 1 0 44 0 PARD3B
SE_01_002600909 chr2:204664252-204674823 Sample_01_0026 Umbilical vein endothelial-cell-of-umbilical-vein 909 2 278 1 0 21 0 PARD3B
SE_02_021000468 chr2:204681175-204721480 Sample_02_0210 Lung MRC-5_N_1DPT 468 8 1138 10 2 153 31 PARD3B
SE_02_075401082 chr2:204899327-204904607 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 1082 2 144 0 0 9 0 PARD3B
SE_01_004400566 chr2:204955050-204983701 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 566 3 822 0 1 200 44 PARD3B
SE_02_033600207 chr2:204956139-204991183 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 207 3 1040 0 2 234 44 PARD3B
SE_02_082200617 chr2:204965733-204989665 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 617 5 684 0 1 181 0 PARD3B
SE_02_075401116 chr2:205010436-205025239 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 1116 4 387 2 1 95 0 PARD3B
SE_02_029600515 chr2:205023716-205075378 Sample_02_0296 Neuroblastoma CLB-BER-Lud 515 7 1397 10 2 234 45 PARD3B
SE_02_150800063 chr2:205024629-205088129 Sample_02_1508 Brain NGPz_untreat 63 26 1694 11 2 277 45 PARD3B
SE_02_030700300 chr2:205045825-205074862 Sample_02_0307 Neuroblastoma SJNB12 300 6 752 1 0 111 45 PARD3B
SE_02_029800383 chr2:205048971-205086810 Sample_02_0298 Neuroblastoma CLB-GA 383 7 960 2 0 133 0 PARD3B
SE_02_030000392 chr2:205049004-205091174 Sample_02_0300 Neuroblastoma CLB-PE 392 8 1095 2 0 162 0 PARD3B
SE_02_030900250 chr2:205049091-205075013 Sample_02_0309 Neuroblastoma SJNB6 250 6 664 1 0 100 0 PARD3B
SE_02_031300261 chr2:205050562-205077668 Sample_02_0313 Neuroblastoma SK-N-DZ 261 2 681 1 0 110 0 PARD3B
SE_02_150000614 chr2:205051876-205079182 Sample_02_1500 Brain KELLY_untreat 614 13 689 2 0 114 0 PARD3B
Genomic distribution of SEs associated with PARD3B
Genome Browser

The strength of the tissue affected by the gene

Expression of PARD3B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)