Gene overview
| Strategies/Algorithm: | closest_active | Ensembl ID: | ENSG00000113552 |
| Gene: | GNPDA1 | Gene type: | protein_coding |
| Strand: | - | External links: |
|
| Genomic region: | chr5:141991749-142013041 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_012700527 | chr5:141992546-142037533 |
Sample_02_0127 | Blood | Induced-regulatory-T-cells_CPI-703 | 527 | 7 | 1182 | 156 | 5 | 0 | 884 | GNPDA1,RNF14,PCDH12 |
| SE_02_013100482 | chr5:141992546-142037533 |
Sample_02_0131 | Lung | 1015_PT | 482 | 7 | 1182 | 156 | 5 | 0 | 884 | GNPDA1,RNF14,PCDH12 |
| SE_02_053000904 | chr5:141992707-142025054 |
Sample_02_0530 | Mammary gland | MCF10A | 904 | 6 | 796 | 129 | 4 | 0 | 884 | GNPDA1,RNF14,PCDH12 |
| SE_02_012600115 | chr5:141993719-142118367 |
Sample_02_0126 | Blood | Induced-regulatory-T-cells_DMSO | 115 | 17 | 3174 | 429 | 13 | 49 | 1055 | NDFIP1,GNPDA1,PCDH12,RNF14 |
| SE_02_013200089 | chr5:141993719-142118367 |
Sample_02_0132 | Lung | 1015_CL | 89 | 17 | 3174 | 429 | 13 | 49 | 1055 | NDFIP1,GNPDA1,PCDH12,RNF14 |
| SE_02_104200655 | chr5:141994027-142025281 |
Sample_02_1042 | Peripheral blood | CD4+ cells_CTCL1137 | 655 | 7 | 774 | 121 | 4 | 0 | 884 | GNPDA1,RNF14,PCDH12 |
| SE_02_086300325 | chr5:142000379-142026133 |
Sample_02_0863 | Malignant rhaboid tumor | TTC1240_empty | 325 | 8 | 599 | 60 | 3 | 0 | 884 | GNPDA1,RNF14,PCDH12 |
| SE_02_086500455 | chr5:142001137-142025987 |
Sample_02_0865 | Malignant rhaboid tumor | TTC1240_SMARCB1_R377H | 455 | 3 | 588 | 59 | 3 | 0 | 804 | GNPDA1,RNF14,PCDH12 |
| SE_02_086600394 | chr5:142004284-142025827 |
Sample_02_0866 | Malignant rhaboid tumor | TTC1240_SMARCB1_delCC | 394 | 3 | 512 | 40 | 3 | 0 | 596 | GNPDA1,RNF14,PCDH12 |
| SE_02_158400996 | chr5:142004464-142030833 |
Sample_02_1584 | Brain | U87 GBM_Mock | 996 | 6 | 652 | 46 | 4 | 0 | 596 | GNPDA1,RNF14,PCDH12 |
| SE_02_104701706 | chr5:142004894-142065744 |
Sample_02_1047 | Peripheral blood | CD4+ cells_CTCL1181 | 1706 | 14 | 1508 | 162 | 4 | 0 | 579 | GNPDA1,RNF14,PCDH12,NDFIP1 |
| SE_02_133000624 | chr5:142006378-142055154 |
Sample_02_1330 | Blood | AMU-AML1 | 624 | 11 | 1201 | 124 | 4 | 0 | 437 | GNPDA1,RNF14,PCDH12 |
| SE_02_086400477 | chr5:142011441-142027912 |
Sample_02_0864 | Malignant rhaboid tumor | TTC1240_SMARCB1_K364del | 477 | 6 | 402 | 32 | 4 | 0 | 341 | GNPDA1,RNF14 |
| SE_02_048102098 | chr5:142011594-142029478 |
Sample_02_0481 | Mammary gland | MDA-MB231 | 2098 | 5 | 453 | 33 | 4 | 0 | 341 | GNPDA1,RNF14 |
| SE_02_086200471 | chr5:142011733-142027178 |
Sample_02_0862 | Malignant rhaboid tumor | TTC1240_SMARCB1 FL | 471 | 3 | 372 | 29 | 3 | 0 | 338 | GNPDA1,RNF14 |
| SE_02_134000516 | chr5:142012288-142025572 |
Sample_02_1340 | Blood | acute myeloid leukemia | 516 | 2 | 304 | 24 | 3 | 0 | 225 | GNPDA1,RNF14 |
| SE_02_044801075 | chr5:142012308-142027408 |
Sample_02_0448 | Bone | MNNG | 1075 | 4 | 363 | 26 | 3 | 0 | 222 | GNPDA1,RNF14 |
| SE_02_126800959 | chr5:142012434-142025160 |
Sample_02_1268 | Bone | Im-GCT-4072_G34W unedited_U3 | 959 | 2 | 292 | 23 | 3 | 0 | 212 | GNPDA1,RNF14 |
| SE_02_093200227 | chr5:142048782-142070452 |
Sample_02_0932 | Embryo | H9 WT_1 | 227 | 6 | 532 | 66 | 1 | 0 | 0 | NDFIP1,GNPDA1 |
| SE_02_118700692 | chr5:142051527-142066629 |
Sample_02_1187 | Brain | GBM16 | 692 | 9 | 370 | 47 | 1 | 0 | 0 | NDFIP1,GNPDA1 |
| SE_02_059401299 | chr5:142052293-142069121 |
Sample_02_0594 | iPSC-derived | neural progenitors | 1299 | 3 | 417 | 53 | 1 | 0 | 0 | NDFIP1,GNPDA1 |
| SE_02_119300975 | chr5:142052367-142066549 |
Sample_02_1193 | Brain | GBM27 | 975 | 5 | 349 | 45 | 1 | 0 | 0 | NDFIP1,GNPDA1 |
| SE_02_043900971 | chr5:142053010-142064846 |
Sample_02_0439 | Bone | Hu09 | 971 | 3 | 287 | 39 | 0 | 0 | 0 | NDFIP1,GNPDA1 |
| SE_02_080100523 | chr5:142053041-142065490 |
Sample_02_0801 | Brain | 2235 | 523 | 5 | 305 | 40 | 0 | 0 | 0 | NDFIP1,GNPDA1 |
| SE_02_093400307 | chr5:142054332-142066784 |
Sample_02_0934 | Embryo | H7-WT | 307 | 8 | 314 | 41 | 1 | 0 | 0 | NDFIP1,GNPDA1 |
| SE_02_093300227 | chr5:142055348-142066277 |
Sample_02_0933 | Embryo | H7 UTXKO | 227 | 5 | 281 | 36 | 0 | 0 | 0 | NDFIP1,GNPDA1 |
Genomic distribution of SEs associated with GNPDA1