SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000117971
Gene: CHRNB4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr15:78624111-78727754 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_110900003 chr15:78592128-78711916 Sample_02_1109 Brain SK-N-FI 3 26 3255 330 114 267 2701 CHRNB4,CHRNA3,CHRNA5,LOC646938
SE_02_031400008 chr15:78595590-78712373 Sample_02_0314 Neuroblastoma SK-N-FI 8 9 3186 321 112 260 2474 CHRNA3,CHRNB4,CHRNA5,LOC646938
SE_02_110600028 chr15:78600211-78720369 Sample_02_1106 Brain NGP 28 51 3299 329 116 244 2330 CHRNB4,CHRNA3,LOC646938,CHRNA5
SE_02_110000013 chr15:78604409-78714625 Sample_02_1100 Brain COG-N-415 13 27 3024 306 109 204 2131 CHRNB4,CHRNA3,LOC646938,CHRNA5
SE_02_031000005 chr15:78613800-78692557 Sample_02_0310 Neuroblastoma SJNB8 5 7 2202 219 86 190 2131 CHRNA3,CHRNB4,CHRNA5
SE_02_025200006 chr15:78614714-78712180 Sample_02_0252 Neuroblastoma IMR5-75-shMYCN-MYCN_high 6 11 2683 259 95 202 2131 CHRNA3,CHRNB4,CHRNA5,LOC646938
SE_02_144300090 chr15:78614914-78650656 Sample_02_1443 Lung H69M 90 7 1039 100 45 122 1743 CHRNB4,CHRNA3,CHRNA5
SE_02_110500010 chr15:78614949-78711479 Sample_02_1105 Brain NBL-S 10 28 2660 259 95 202 2131 CHRNB4,CHRNA3,LOC646938,CHRNA5
SE_02_104602059 chr15:78614955-78652605 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2059 13 1103 102 47 125 1780 CHRNB4,CHRNA3,CHRNA5
SE_02_047200021 chr15:78614962-78711913 Sample_02_0472 Brain Kelly TAE resistant 21 46 2668 259 95 202 2131 CHRNB4,CHRNA3,LOC646938,CHRNA5
SE_02_110700072 chr15:78615103-78711907 Sample_02_1107 Brain SK-N-AS 72 30 2659 256 94 202 2131 CHRNB4,CHRNA3,LOC646938,CHRNA5
SE_02_150000006 chr15:78615381-78720212 Sample_02_1500 Brain KELLY_untreat 6 35 2868 272 99 202 2131 CHRNB4,CHRNA3,LOC646938,CHRNA5
SE_02_025400015 chr15:78616179-78710313 Sample_02_0254 Neuroblastoma IMR5-75 15 22 2593 240 87 201 2131 CHRNA3,CHRNB4,LOC646938
SE_02_029800007 chr15:78616358-78712000 Sample_02_0298 Neuroblastoma CLB-GA 7 13 2630 243 87 201 2131 CHRNA3,CHRNB4,LOC646938
SE_02_030400003 chr15:78616371-78711421 Sample_02_0304 Neuroblastoma N206 3 7 2617 243 87 201 2131 CHRNA3,CHRNB4,LOC646938
SE_02_025300009 chr15:78616413-78711334 Sample_02_0253 Brain BE2C_DMSO 9 12 2612 243 87 201 2131 CHRNA3,CHRNB4,LOC646938
SE_02_031900004 chr15:78616438-78711401 Sample_02_0319 Neuroblastoma NB-EBc1 4 9 2611 243 87 201 2131 CHRNA3,CHRNB4,LOC646938
SE_02_110800060 chr15:78616500-78720258 Sample_02_1108 Brain SK-N-BE_2_-C 60 27 2841 262 93 201 2131 CHRNB4,CHRNA3,LOC646938
SE_02_124600514 chr15:78616524-78650320 Sample_02_1246 Brain LAN5_ATRA 514 7 982 84 37 121 1743 CHRNB4,CHRNA3
SE_02_030000015 chr15:78616638-78711243 Sample_02_0300 Neuroblastoma CLB-PE 15 7 2601 243 87 201 2131 CHRNA3,CHRNB4,LOC646938
SE_02_042100098 chr15:78616977-78645627 Sample_02_0421 Brain BE2C_3 98 4 837 74 34 115 1687 CHRNA3,CHRNB4
SE_02_021100109 chr15:78633579-78686632 Sample_02_0211 Lung MRC-5_NFD_1DPT 109 10 1459 137 52 99 779 CHRNB4,CHRNA3
SE_02_031300008 chr15:78636379-78711148 Sample_02_0313 Neuroblastoma SK-N-DZ 8 9 1988 183 61 108 596 CHRNB4,CHRNA3,LOC646938
SE_02_007500124 chr15:78636553-78643833 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 124 1 187 14 8 27 172 CHRNB4,CHRNA3
SE_02_054100233 chr15:78636761-78644514 Sample_02_0541 Brain Kelly_NaiveJQ1 233 1 198 13 8 23 172 CHRNB4,CHRNA3
SE_00_000300827 chr15:78640291-78696739 Sample_00_0003 Adrenal gland adrenal-gland_97d 827 9 1486 140 47 73 596 CHRNB4,CHRNA3
SE_02_036300512 chr15:78659014-78682862 Sample_02_0363 Haematopoietic and lymphoid tissue 697 512 4 658 75 26 50 55 CHRNA3,CHRNB4
SE_02_030300014 chr15:78659094-78711810 Sample_02_0303 Neuroblastoma LAN1 14 6 1367 143 42 74 55 CHRNA3,LOC646938,CHRNB4
SE_02_054300054 chr15:78661097-78710251 Sample_02_0543 Brain Kelly_vehicle 54 11 1268 134 39 74 0 LOC646938,CHRNB4,CHRNA3
SE_02_030200013 chr15:78661640-78710355 Sample_02_0302 Neuroblastoma IMR32 13 7 1242 130 38 74 0 CHRNA3,LOC646938,CHRNB4
SE_02_106300010 chr15:78661791-78710785 Sample_02_1063 Brain CLB-GA-control 10 20 1251 132 39 74 0 LOC646938,CHRNB4,CHRNA3
SE_02_031200268 chr15:78663003-78710731 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 268 4 1228 130 38 72 0 CHRNA3,LOC646938,CHRNB4
SE_02_030600082 chr15:78663460-78710541 Sample_02_0306 Autonomic ganglia SH-SY5Y 82 6 1211 130 38 72 0 CHRNA3,LOC646938,CHRNB4
SE_02_025100074 chr15:78663463-78710310 Sample_02_0251 Autonomic ganglia SH-SY5Y-MYCN-OFF 74 7 1200 127 37 72 0 CHRNA3,LOC646938,CHRNB4
SE_02_007500013 chr15:78663581-78710551 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 13 10 1208 130 38 72 0 CHRNA3,LOC646938,CHRNB4
SE_02_031100143 chr15:78663626-78710947 Sample_02_0311 Neuroblastoma SK-N-AS 143 6 1216 129 38 72 0 CHRNA3,LOC646938,CHRNB4
SE_02_150800024 chr15:78663735-78720273 Sample_02_1508 Brain NGPz_untreat 24 20 1455 151 44 72 0 LOC646938,CHRNB4,CHRNA3
SE_02_031500372 chr15:78663912-78686434 Sample_02_0315 Neuroblastoma TR14 372 5 597 74 23 55 0 CHRNA3,CHRNB4
SE_02_053800046 chr15:78663992-78695064 Sample_02_0538 Brain SK-N-BE_2_-C_resistant_JQ1 46 16 789 93 28 60 0 CHRNB4,CHRNA3
SE_02_034000096 chr15:78664052-78692247 Sample_02_0340 Brain BE2C_2 96 5 715 86 26 58 0 CHRNA3,CHRNB4
SE_02_030800057 chr15:78664108-78689239 Sample_02_0308 Neuroblastoma SJNB1 57 4 648 77 24 56 0 CHRNA3,CHRNB4
SE_02_106400009 chr15:78664119-78710397 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 9 12 1186 125 35 72 0 LOC646938,CHRNB4,CHRNA3
SE_02_042100040 chr15:78664182-78710708 Sample_02_0421 Brain BE2C_3 40 5 1196 127 36 72 0 CHRNA3,LOC646938,CHRNB4
SE_02_124500126 chr15:78664372-78694896 Sample_02_1245 Brain LAN5_Ethanol 126 14 775 91 27 59 0 CHRNB4,CHRNA3
SE_02_054200074 chr15:78665909-78687408 Sample_02_0542 Brain Kelly_ResJQ1 74 1 564 70 21 54 0 CHRNB4,CHRNA3
SE_02_054100022 chr15:78666579-78687946 Sample_02_0541 Brain Kelly_NaiveJQ1 22 1 557 68 21 54 0 CHRNB4,CHRNA3
SE_02_029600291 chr15:78667420-78692933 Sample_02_0296 Neuroblastoma CLB-BER-Lud 291 2 628 78 24 58 0 CHRNA3,CHRNB4
SE_02_029900105 chr15:78667433-78687311 Sample_02_0299 Neuroblastoma CLB-MA 105 2 511 66 20 54 0 CHRNA3,CHRNB4
SE_02_149900039 chr15:78667537-78710295 Sample_02_1499 Brain BE_2_-C 39 12 1085 116 33 70 0 LOC646938,CHRNB4,CHRNA3
SE_02_124600136 chr15:78667618-78710183 Sample_02_1246 Brain LAN5_ATRA 136 21 1080 116 33 70 0 LOC646938,CHRNB4,CHRNA3
SE_02_053600047 chr15:78668053-78693774 Sample_02_0536 Brain SK-N-BE_2_-C_resistant_vehicle 47 16 635 81 25 58 0 CHRNB4,CHRNA3
SE_02_123500286 chr15:78668128-78704550 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 286 18 904 105 29 58 0 LOC646938,CHRNB4,CHRNA3
SE_02_033800130 chr15:78668977-78687433 Sample_02_0338 Neuroblastoma BE2 130 5 478 64 19 54 0 CHRNA3,CHRNB4
SE_02_030700185 chr15:78669016-78686586 Sample_02_0307 Neuroblastoma SJNB12 185 3 463 64 19 53 0 CHRNA3,CHRNB4
SE_02_007600350 chr15:78669042-78686659 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 350 7 463 64 19 53 0 CHRNA3,CHRNB4
SE_02_106800064 chr15:78669406-78720266 Sample_02_1068 Brain NGP_ctrl 64 22 1302 134 39 70 0 LOC646938,CHRNB4,CHRNA3
SE_02_030900135 chr15:78669454-78687445 Sample_02_0309 Neuroblastoma SJNB6 135 4 469 61 19 54 0 CHRNA3,CHRNB4
SE_01_011100344 chr15:78669743-78709841 Sample_01_0111 Brain SK-N-SH 344 17 1014 110 32 70 0 LOC646938,CHRNB4,CHRNA3
SE_02_069900022 chr15:78670306-78686691 Sample_02_0699 Brain Kelly_shB4_Res 22 12 437 60 19 53 0 CHRNB4,CHRNA3
SE_02_124400399 chr15:78670443-78684236 Sample_02_1244 Brain KCNR_ATRA 399 7 376 50 18 46 0 CHRNB4,CHRNA3
SE_02_070000016 chr15:78670873-78686074 Sample_02_0700 Brain Kelly_shLUC_Res 16 12 405 55 18 53 0 CHRNB4,CHRNA3
SE_02_074300071 chr15:78671278-78696800 Sample_02_0743 Embryo ES derived mesoderm_day2 71 8 627 76 23 58 0 CHRNB4,CHRNA3
SE_02_123900383 chr15:78671471-78709392 Sample_02_1239 Skin Waga_virus_positive 383 16 955 105 31 69 0 LOC646938,CHRNB4
SE_02_054400125 chr15:78671879-78687543 Sample_02_0544 Brain Kelly_ResVeh 125 1 402 55 17 47 0 CHRNB4
SE_02_110300137 chr15:78671987-78687302 Sample_02_1103 Brain NB-1643 137 1 395 55 17 37 0 CHRNB4
SE_02_047100114 chr15:78672009-78681682 Sample_02_0471 Brain Kelly DMSO 114 1 266 39 14 9 0 CHRNB4
SE_02_055600527 chr15:78672092-78697446 Sample_02_0556 iPSCs BOFS hiPSC cl1 527 3 615 73 21 40 0 CHRNB4
Genomic distribution of SEs associated with CHRNB4
Genome Browser

The strength of the tissue affected by the gene

Expression of CHRNB4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)