Gene overview
| Strategies/Algorithm: | closest_active | Ensembl ID: | ENSG00000141376 |
| Gene: | BCAS3 | Gene type: | protein_coding |
| Strand: | + | External links: |
|
| Genomic region: | chr17:60677453-61392838 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_104300694 | chr17:60595311-60689443 |
Sample_02_1043 | Peripheral blood | Peripheral blood cells_CTCL1200 | 694 | 32 | 2351 | 36 | 0 | 177 | 982 | BCAS3,PPM1D,LOC388406 |
| SE_02_056300006 | chr17:60599035-60722926 |
Sample_02_0563 | Mammary gland | MCF7L-P_0h | 6 | 29 | 3211 | 103 | 0 | 189 | 1049 | BCAS3,PPM1D,LOC388406 |
| SE_02_104901779 | chr17:60603556-60682030 |
Sample_02_1049 | Peripheral blood | CD4+ cell_ROMI | 1779 | 17 | 1968 | 31 | 0 | 121 | 697 | BCAS3,PPM1D,LOC388406 |
| SE_02_000400058 | chr17:60613206-60676163 |
Sample_02_0004 | Mammary gland | MCF-7_10Gygamma_7.5h | 58 | 15 | 1592 | 25 | 0 | 84 | 531 | PPM1D,BCAS3 |
| SE_02_000300066 | chr17:60613224-60671102 |
Sample_02_0003 | Mammary gland | MCF-7_10Gygamma_5h | 66 | 10 | 1453 | 23 | 0 | 84 | 531 | PPM1D,BCAS3 |
| SE_02_149300411 | chr17:60640775-60672331 |
Sample_02_1493 | Skin | SK-MEL-5_DMSO_6h | 411 | 8 | 727 | 11 | 0 | 51 | 448 | PPM1D,BCAS3 |
| SE_02_115800023 | chr17:60670823-60801929 |
Sample_02_1158 | Mammary gland | MCF7_siYTHDC1_E2 | 23 | 71 | 3476 | 219 | 6 | 131 | 365 | BCAS3,PPM1D |
| SE_02_056400080 | chr17:60672092-60692779 |
Sample_02_0564 | Mammary gland | MCF7L-P_E2_1h | 80 | 4 | 495 | 6 | 0 | 44 | 234 | BCAS3 |
| SE_02_000300016 | chr17:60690104-60811539 |
Sample_02_0003 | Mammary gland | MCF-7_10Gygamma_5h | 16 | 42 | 3204 | 217 | 6 | 94 | 156 | BCAS3 |
| SE_02_000400053 | chr17:60690190-60758825 |
Sample_02_0004 | Mammary gland | MCF-7_10Gygamma_7.5h | 53 | 31 | 1830 | 136 | 4 | 63 | 75 | BCAS3 |
| SE_02_069700352 | chr17:60712749-60749488 |
Sample_02_0697 | Lung | NCI-H1048-cas9_sgHROSA | 352 | 10 | 929 | 81 | 0 | 54 | 37 | BCAS3 |
| SE_02_068500181 | chr17:60713227-60749563 |
Sample_02_0685 | Lung | NCI-H1048_no infection | 181 | 6 | 921 | 81 | 0 | 54 | 37 | BCAS3 |
| SE_02_014000185 | chr17:60718936-60751541 |
Sample_02_0140 | Kidney | RT242 | 185 | 3 | 812 | 74 | 3 | 54 | 37 | BCAS3 |
| SE_02_041000092 | chr17:60719332-60751773 |
Sample_02_0410 | Brain | BT16_NoDox | 92 | 3 | 812 | 73 | 3 | 54 | 37 | BCAS3 |
| SE_02_040700081 | chr17:60719545-60751544 |
Sample_02_0407 | Brain | BT16 | 81 | 3 | 790 | 72 | 3 | 54 | 37 | BCAS3 |
| SE_02_141000311 | chr17:60719631-60749539 |
Sample_02_1410 | Brain | GSC6 | 311 | 7 | 743 | 71 | 0 | 54 | 37 | BCAS3 |
| SE_02_146200277 | chr17:60719688-60749587 |
Sample_02_1462 | Ovary | A2780_shMBD3.26 | 277 | 7 | 742 | 71 | 0 | 54 | 37 | BCAS3 |
| SE_02_059400992 | chr17:60720399-60749773 |
Sample_02_0594 | iPSC-derived | neural progenitors | 992 | 3 | 727 | 69 | 0 | 54 | 37 | BCAS3 |
| SE_02_149300758 | chr17:60720952-60749599 |
Sample_02_1493 | Skin | SK-MEL-5_DMSO_6h | 758 | 6 | 709 | 67 | 0 | 53 | 37 | BCAS3 |
| SE_02_067100362 | chr17:60721000-60748724 |
Sample_02_0671 | Mammary gland | breast cancer_DSG | 362 | 9 | 685 | 66 | 0 | 50 | 37 | BCAS3 |
| SE_02_069800411 | chr17:60721206-60749417 |
Sample_02_0698 | Lung | NCI-H1048-cas9_sgPOU2F3 | 411 | 5 | 699 | 67 | 0 | 50 | 37 | BCAS3 |
| SE_02_128100115 | chr17:60729759-60749484 |
Sample_02_1281 | Lung | NCI-H1048_p8-15 | 115 | 6 | 459 | 42 | 0 | 50 | 37 | BCAS3 |
| SE_02_083800283 | chr17:60743312-60749159 |
Sample_02_0838 | Embryo | hNPCs_WT | 283 | 6 | 114 | 6 | 0 | 30 | 37 | BCAS3 |
| SE_02_000400188 | chr17:60772479-60838002 |
Sample_02_0004 | Mammary gland | MCF-7_10Gygamma_7.5h | 188 | 15 | 1539 | 69 | 1 | 85 | 81 | BCAS3 |
| SE_02_040700531 | chr17:60783324-60803499 |
Sample_02_0407 | Brain | BT16 | 531 | 4 | 464 | 14 | 0 | 27 | 56 | BCAS3 |
| SE_02_068300183 | chr17:60791312-60874849 |
Sample_02_0683 | Lung | DMS114 | 183 | 45 | 1926 | 85 | 2 | 85 | 73 | BCAS3 |
| SE_02_141000933 | chr17:60816675-60837305 |
Sample_02_1410 | Brain | GSC6 | 933 | 6 | 479 | 36 | 1 | 54 | 0 | BCAS3 |
| SE_02_014000071 | chr17:60826003-60880070 |
Sample_02_0140 | Kidney | RT242 | 71 | 11 | 1229 | 64 | 2 | 94 | 49 | BCAS3 |
| SE_02_041000023 | chr17:60829360-60875879 |
Sample_02_0410 | Brain | BT16_NoDox | 23 | 2 | 1080 | 57 | 2 | 57 | 49 | BCAS3 |
| SE_02_040700022 | chr17:60830097-60873968 |
Sample_02_0407 | Brain | BT16 | 22 | 4 | 1011 | 52 | 2 | 55 | 33 | BCAS3 |
| SE_02_146200106 | chr17:60850587-60914258 |
Sample_02_1462 | Ovary | A2780_shMBD3.26 | 106 | 10 | 1358 | 36 | 2 | 106 | 261 | BCAS3 |
| SE_02_146300124 | chr17:60850880-60910956 |
Sample_02_1463 | Ovary | A2780_shMBD3.232 | 124 | 15 | 1286 | 32 | 2 | 91 | 261 | BCAS3 |
| SE_02_043900943 | chr17:60863906-60877606 |
Sample_02_0439 | Bone | Hu09 | 943 | 10 | 320 | 4 | 0 | 10 | 49 | BCAS3 |
| SE_02_146100210 | chr17:60900264-60911113 |
Sample_02_1461 | Ovary | A2780_shRen | 210 | 2 | 221 | 4 | 1 | 47 | 71 | BCAS3 |
| SE_02_146200217 | chr17:60927322-60976762 |
Sample_02_1462 | Ovary | A2780_shMBD3.26 | 217 | 8 | 1115 | 31 | 3 | 73 | 35 | BCAS3 |
| SE_02_146100208 | chr17:60931073-60957040 |
Sample_02_1461 | Ovary | A2780_shRen | 208 | 7 | 572 | 15 | 3 | 71 | 35 | BCAS3 |
| SE_02_146300256 | chr17:60931285-60958416 |
Sample_02_1463 | Ovary | A2780_shMBD3.232 | 256 | 11 | 595 | 18 | 3 | 66 | 35 | BCAS3 |
| SE_02_024400431 | chr17:60933283-60952458 |
Sample_02_0244 | Foreskin | foreskin_D11 | 431 | 5 | 408 | 9 | 3 | 56 | 35 | BCAS3 |
| SE_02_146100225 | chr17:60986635-61017490 |
Sample_02_1461 | Ovary | A2780_shRen | 225 | 8 | 683 | 18 | 1 | 107 | 104 | BCAS3 |
| SE_02_031800261 | chr17:60988568-61022037 |
Sample_02_0318 | Neuroblastoma | NB69 | 261 | 3 | 723 | 23 | 1 | 125 | 104 | BCAS3 |
| SE_02_021000733 | chr17:60989252-61024639 |
Sample_02_0210 | Lung | MRC-5_N_1DPT | 733 | 8 | 765 | 27 | 1 | 133 | 104 | BCAS3 |
| SE_02_014000039 | chr17:60992672-61067090 |
Sample_02_0140 | Kidney | RT242 | 39 | 12 | 1655 | 52 | 1 | 276 | 189 | BCAS3 |
| SE_02_086300268 | chr17:61000184-61017841 |
Sample_02_0863 | Malignant rhaboid tumor | TTC1240_empty | 268 | 3 | 366 | 6 | 1 | 80 | 47 | BCAS3 |
| SE_02_031600011 | chr17:61000336-61021461 |
Sample_02_0316 | Neuroblastoma | CHP212 | 11 | 1 | 437 | 11 | 1 | 98 | 47 | BCAS3 |
| SE_02_086600305 | chr17:61000473-61018184 |
Sample_02_0866 | Malignant rhaboid tumor | TTC1240_SMARCB1_delCC | 305 | 3 | 364 | 6 | 1 | 80 | 47 | BCAS3 |
| SE_02_086200292 | chr17:61000508-61018117 |
Sample_02_0862 | Malignant rhaboid tumor | TTC1240_SMARCB1 FL | 292 | 2 | 364 | 6 | 1 | 80 | 47 | BCAS3 |
| SE_02_086400303 | chr17:61000540-61018169 |
Sample_02_0864 | Malignant rhaboid tumor | TTC1240_SMARCB1_K364del | 303 | 3 | 364 | 6 | 1 | 80 | 47 | BCAS3 |
| SE_02_086500302 | chr17:61000615-61018124 |
Sample_02_0865 | Malignant rhaboid tumor | TTC1240_SMARCB1_R377H | 302 | 3 | 363 | 6 | 1 | 80 | 47 | BCAS3 |
| SE_02_030500649 | chr17:61000635-61018592 |
Sample_02_0305 | Neuroblastoma | SH-EP | 649 | 3 | 367 | 6 | 1 | 81 | 47 | BCAS3 |
| SE_02_029900355 | chr17:61000851-61021806 |
Sample_02_0299 | Neuroblastoma | CLB-MA | 355 | 4 | 439 | 12 | 1 | 98 | 47 | BCAS3 |
| SE_02_150600280 | chr17:61001084-61018265 |
Sample_02_1506 | Brain | SHEP with tetracycline inducible MYC_DOX_6HR | 280 | 6 | 352 | 6 | 1 | 81 | 47 | BCAS3 |
| SE_02_150400198 | chr17:61001134-61020485 |
Sample_02_1504 | Brain | SHEP with tetracycline inducible MYCN_0HR | 198 | 10 | 399 | 7 | 1 | 98 | 47 | BCAS3 |
| SE_02_141600811 | chr17:61002980-61029403 |
Sample_02_1416 | Brain | SF9402 | 811 | 5 | 554 | 22 | 1 | 131 | 77 | BCAS3 |
| SE_02_044100340 | chr17:61007749-61031996 |
Sample_02_0441 | Bone | M112 | 340 | 19 | 512 | 21 | 1 | 126 | 77 | BCAS3 |
| SE_02_043900272 | chr17:61007787-61032529 |
Sample_02_0439 | Bone | Hu09 | 272 | 13 | 528 | 21 | 1 | 126 | 77 | BCAS3 |
Genomic distribution of SEs associated with BCAS3