SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000143549
Gene: TPM3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:154155304-154194648 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_153000667 chr1:154148327-154186498 Sample_02_1530 Peripheral blood neutrophils_0BA0X 667 7 851 67 2 151 2017 TPM3,NUP210L,UBAP2L,MIR5698,C1ORF43,C1ORF189,MIR190B,C1orf189
SE_02_134000262 chr1:154148496-154187062 Sample_02_1340 Blood acute myeloid leukemia 262 20 856 67 2 156 2017 TPM3,NUP210L,UBAP2L,MIR5698,C1ORF43,C1ORF189,MIR190B
SE_02_122900437 chr1:154149114-154190178 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 437 16 913 72 2 157 2076 TPM3,NUP210L,UBAP2L,MIR5698,C1ORF43,C1ORF189,MIR190B,HAX1,C1orf43,C1orf189
SE_02_104301810 chr1:154149153-154188321 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1810 11 873 67 2 157 2076 TPM3,NUP210L,UBAP2L,MIR5698,C1ORF43,C1ORF189,MIR190B
SE_02_146700234 chr1:154154173-154184158 Sample_02_1467 Blood HUDEP-2_LRFKO 234 8 654 52 0 142 1975 TPM3,NUP210L,UBAP2L,MIR5698,C1ORF43,C1ORF189,MIR190B
SE_04_000200868 chr1:154154261-154188394 Sample_04_0002 Blood cold shocked K562 868 5 757 60 1 151 2034 TPM3,NUP210L,UBAP2L,MIR5698,C1ORF43,C1ORF189,MIR190B,HAX1,C1orf43,C1orf189
SE_01_010101265 chr1:154172102-154199820 Sample_01_0101 Pancreas pancreas_54y 1265 12 629 44 3 151 799 C1ORF189,MIR190B,TPM3,UBAP2L,NUP210L,C1ORF43
SE_02_147900089 chr1:154174476-154186651 Sample_02_1479 Bone EW-7 89 1 291 20 1 68 259 TPM3,UBAP2L,NUP210L,C1ORF43,C1ORF189,MIR190B
SE_02_147400301 chr1:154175219-154185882 Sample_02_1474 Bone CHLA-10 301 2 260 17 1 63 259 TPM3,UBAP2L,NUP210L,C1ORF43,C1ORF189,MIR190B
SE_02_081601576 chr1:154175716-154183829 Sample_02_0816 Ovary Clear cell ovarian cancer 1576 2 189 13 0 62 259 TPM3,UBAP2L,NUP210L,C1ORF43,C1ORF189,MIR190B
SE_02_061700988 chr1:154177077-154200007 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 988 3 523 33 3 140 573 C1ORF189,MIR190B,TPM3,UBAP2L,NUP210L,C1ORF43
SE_02_075300297 chr1:154177179-154188337 Sample_02_0753 Embryo ES-derived progenitors_FG type 297 2 267 17 1 69 260 TPM3,UBAP2L,NUP210L,C1ORF43,C1ORF189,MIR190B
SE_02_075400186 chr1:154177541-154198061 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 186 3 463 31 2 134 486 TPM3,MIR190B,UBAP2L,NUP210L,C1ORF43,C1ORF189
SE_02_075700363 chr1:154177613-154188471 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 363 2 259 18 1 69 260 TPM3,UBAP2L,NUP210L,C1ORF43,C1ORF189,MIR190B
SE_02_004001320 chr1:154177672-154197592 Sample_02_0040 Embryo PFG 1320 3 456 30 2 131 486 TPM3,MIR190B,C1ORF43,NUP210L,C1ORF189,UBAP2L
SE_02_125300588 chr1:154177795-154200959 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 588 5 528 33 3 142 629 C1ORF189,MIR190B,TPM3,UBAP2L,NUP210L,C1ORF43
SE_02_004800482 chr1:154177962-154188342 Sample_02_0048 Embryo endodermal CyT49_HE 482 2 246 16 1 66 257 TPM3,C1ORF43,NUP210L,C1ORF189,MIR190B,UBAP2L
SE_02_004400327 chr1:154178006-154187611 Sample_02_0044 Embryo endodermal CyT49_ES_D5 327 3 229 13 1 66 255 TPM3,C1ORF43,NUP210L,C1ORF189,MIR190B,UBAP2L
SE_02_003601241 chr1:154178162-154188216 Sample_02_0036 Embryo H7 1241 4 236 14 1 64 239 TPM3,C1ORF43,NUP210L,C1ORF189,MIR190B,UBAP2L
SE_02_004500442 chr1:154178169-154199875 Sample_02_0045 Embryo endodermal CyT49_ES_D7 442 7 492 30 3 135 552 TPM3,C1ORF189,MIR190B,C1ORF43,NUP210L,UBAP2L
SE_02_049300253 chr1:154178248-154200153 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 253 7 498 30 3 131 537 TPM3,C1ORF189,MIR190B,UBAP2L,NUP210L,C1ORF43
SE_00_003601352 chr1:154178287-154183920 Sample_00_0036 Small intestine small-intestine_108days 1352 1 126 7 0 49 163 TPM3,C1ORF43,NUP210L,C1ORF189,MIR190B,UBAP2L
SE_02_039400282 chr1:154178303-154200790 Sample_02_0394 Mammary gland T-47D_2 282 5 506 30 3 132 587 TPM3,C1ORF189,MIR190B,C1ORF43,NUP210L,UBAP2L
SE_02_123400146 chr1:154178385-154200821 Sample_02_1234 Mammary gland T47D_Full 146 7 502 30 3 131 577 TPM3,C1ORF189,MIR190B,UBAP2L,NUP210L,C1ORF43
SE_02_007900081 chr1:154178402-154200897 Sample_02_0079 Mammary gland T-47D_1 81 3 503 31 3 131 576 TPM3,C1ORF189,MIR190B,C1ORF43,NUP210L,UBAP2L
SE_00_002001514 chr1:154178435-154184183 Sample_00_0020 Large intestine large-intestine_108d 1514 1 128 6 0 48 148 TPM3,C1ORF43,NUP210L,C1ORF189,MIR190B,UBAP2L
SE_02_080900284 chr1:154178597-154200933 Sample_02_0809 Mammary gland T47D Serum 284 3 500 30 3 130 576 TPM3,C1ORF189,MIR190B,UBAP2L,NUP210L,C1ORF43
SE_02_109300286 chr1:154178627-154200438 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 286 6 489 29 3 127 529 TPM3,C1ORF189,MIR190B,UBAP2L,NUP210L,C1ORF43
SE_02_108600684 chr1:154178654-154200244 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 684 6 486 29 3 127 520 TPM3,C1ORF189,MIR190B,UBAP2L,NUP210L,C1ORF43
SE_02_109000266 chr1:154179010-154200632 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 266 6 485 29 3 130 564 TPM3,C1ORF189,MIR190B,UBAP2L,NUP210L,C1ORF43
SE_02_157000932 chr1:154179952-154188936 Sample_02_1570 iPSCs EiPSC 932 5 211 14 1 50 207 TPM3,UBAP2L,NUP210L,C1ORF43,C1ORF189,MIR190B
SE_02_156700856 chr1:154180018-154188353 Sample_02_1567 iPSCs CiPSC 856 4 197 12 1 50 207 TPM3,UBAP2L,NUP210L,C1ORF43,C1ORF189,MIR190B
SE_02_109100290 chr1:154180026-154200212 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 290 6 459 28 3 121 520 TPM3,C1ORF189,MIR190B,UBAP2L,NUP210L,C1ORF43
SE_02_157200904 chr1:154180028-154188360 Sample_02_1572 iPSCs FiPSC 904 3 197 12 1 50 207 TPM3,UBAP2L,NUP210L,C1ORF43,C1ORF189,MIR190B
SE_02_053200138 chr1:154180064-154200887 Sample_02_0532 Mammary gland T47D 138 9 469 29 3 124 576 TPM3,C1ORF189,MIR190B,UBAP2L,NUP210L,C1ORF43
SE_02_052500556 chr1:154180105-154197698 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 556 7 400 26 2 111 433 TPM3,MIR190B,UBAP2L,NUP210L,C1ORF43,C1ORF189
SE_02_143000620 chr1:154180260-154184038 Sample_02_1430 Blood Kasumi-3_mock-infected 620 1 87 5 0 39 148 TPM3,UBAP2L,NUP210L,C1ORF43,C1ORF189,MIR190B
SE_02_086100214 chr1:154181031-154188957 Sample_02_0861 iPSCs SAH_WT 214 5 191 13 1 41 207 TPM3,UBAP2L,NUP210L,C1ORF43,C1ORF189,MIR190B
SE_02_146400184 chr1:154181173-154202476 Sample_02_1464 Ovary CAOV4 184 8 478 29 3 115 576 TPM3,C1ORF189,MIR190B,UBAP2L,NUP210L,C1ORF43,C1orf43,RAB13,HAX1,JTB,SLC39A1,DENND4B
Genomic distribution of SEs associated with TPM3
Genome Browser

The strength of the tissue affected by the gene

Expression of TPM3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)