SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000196074
Gene: SYCP2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr20:59863564-59933655 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_071300643 chr20:59809383-59850101 Sample_02_0713 Pancreas BxPC3_sgTP63 643 14 1291 27 5 59 317 PHACTR3,SYCP2,PPP1R3D
SE_02_024100258 chr20:59819600-59836576 Sample_02_0241 Colon V456 258 3 574 11 1 11 105 PHACTR3,SYCP2,C20ORF177
SE_02_060000223 chr20:59819948-59838359 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 223 7 606 11 1 20 127 PHACTR3,SYCP2,FAM217B
SE_02_060100247 chr20:59820057-59837926 Sample_02_0601 Mammary gland MCF10A_p53shRNA_Nutlin3A 247 7 583 11 1 15 127 PHACTR3,SYCP2,FAM217B
SE_02_060400413 chr20:59820134-59837904 Sample_02_0604 Mammary gland MCF10A_scrshRNA_DMSO 413 7 577 11 1 15 127 PHACTR3,SYCP2,FAM217B
SE_02_070701087 chr20:59820854-59846925 Sample_02_0707 Pancreas BxPC3 WT 1087 11 837 13 1 39 242 PHACTR3,SYCP2
SE_02_008600342 chr20:59822805-59847911 Sample_02_0086 Pancreas CAPAN1 342 2 808 12 1 52 317 PHACTR3,SYCP2,C20ORF177
SE_02_125800286 chr20:59824710-59848277 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 286 7 741 10 0 52 317 PHACTR3,SYCP2
SE_02_008000349 chr20:59825314-59847582 Sample_02_0080 Lung Calu-3 349 8 708 10 0 47 299 PHACTR3,SYCP2
SE_02_020300106 chr20:59825447-59847561 Sample_02_0203 Stomach YCC21 106 6 702 10 0 47 298 PHACTR3,SYCP2,PPP1R3D
SE_02_137100360 chr20:59825459-59847456 Sample_02_1371 Pancreas Patu899S-untreated 360 8 700 10 0 47 290 PHACTR3,SYCP2
SE_02_136200921 chr20:59825545-59838290 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 921 5 430 8 0 20 127 PHACTR3,SYCP2
SE_02_136700315 chr20:59825634-59850119 Sample_02_1367 Pancreas Capan1-untreated 315 6 750 13 0 53 317 PHACTR3,SYCP2,FAM217B
SE_02_136100743 chr20:59825666-59838267 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 743 4 424 7 0 20 127 PHACTR3,SYCP2
SE_02_049101204 chr20:59825749-59850140 Sample_02_0491 Pharyng Detroit 562-Control 1204 12 747 13 0 53 317 PHACTR3,SYCP2,FAM217B
SE_02_071700680 chr20:59825757-59850190 Sample_02_0717 Pancreas HPAFII_GFP_DOX 680 15 749 13 0 53 317 PHACTR3,SYCP2
SE_02_152400664 chr20:59825867-59850112 Sample_02_1524 Lung H3122 DMSO 664 10 743 13 0 53 317 PHACTR3,SYCP2
SE_02_071600381 chr20:59825902-59845493 Sample_02_0716 Pancreas SUIT2_GFP 381 10 632 9 0 39 242 PHACTR3,SYCP2
SE_02_071900647 chr20:59825914-59845541 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 647 7 632 9 0 39 242 PHACTR3,SYCP2
SE_02_070600280 chr20:59825942-59845472 Sample_02_0706 Pancreas SUIT2 WT 280 8 629 9 0 39 242 PHACTR3,SYCP2
SE_02_127400141 chr20:59825956-59850120 Sample_02_1274 Prostate PC3_DMSO 141 21 740 13 0 53 317 PHACTR3,SYCP2,FAM217B
SE_01_006200244 chr20:59826306-59836961 Sample_01_0062 Prostate RWPE2 244 3 373 7 0 14 127 PHACTR3,SYCP2
SE_02_053200299 chr20:59917953-59930649 Sample_02_0532 Mammary gland T47D 299 6 317 7 0 19 103 SYCP2,FAM217B,PPP1R3D,CDH26
SE_02_040300214 chr20:59920172-59935874 Sample_02_0403 Mammary gland T-47D_untreat 214 1 408 8 0 18 236 C20ORF177,SYCP2,PPP1R3D,CDH26
SE_02_039400187 chr20:59920384-59935305 Sample_02_0394 Mammary gland T-47D_2 187 1 396 8 0 16 231 C20ORF177,SYCP2,PPP1R3D,CDH26
SE_02_146500276 chr20:59920665-59940047 Sample_02_1465 Ovary CAOV4cis 276 6 488 8 0 60 651 PPP1R3D,FAM217B,SYCP2,CDH26
SE_02_080900591 chr20:59920734-59934739 Sample_02_0809 Mammary gland T47D Serum 591 5 378 8 0 13 209 FAM217B,SYCP2,PPP1R3D,CDH26
SE_02_109000199 chr20:59922613-59935218 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 199 6 349 7 0 6 172 FAM217B,SYCP2,PPP1R3D,CDH26
SE_02_109300325 chr20:59922648-59934952 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 325 5 337 7 0 6 172 FAM217B,SYCP2,PPP1R3D,CDH26
SE_02_108600280 chr20:59922773-59934915 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 280 4 336 7 0 6 172 FAM217B,SYCP2,PPP1R3D,CDH26
SE_02_108900357 chr20:59922776-59934894 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 357 4 335 7 0 6 172 FAM217B,SYCP2,PPP1R3D,CDH26
SE_02_146400355 chr20:59922995-59940037 Sample_02_1464 Ovary CAOV4 355 5 432 7 0 53 610 PPP1R3D,FAM217B,SYCP2,CDH26
SE_02_109100211 chr20:59923533-59934786 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 211 6 310 7 0 6 172 FAM217B,SYCP2,PPP1R3D,CDH26
SE_02_123400375 chr20:59923626-59939699 Sample_02_1234 Mammary gland T47D_Full 375 8 411 7 0 45 519 PPP1R3D,FAM217B,SYCP2,CDH26
Genomic distribution of SEs associated with SYCP2
Genome Browser

The strength of the tissue affected by the gene

Expression of SYCP2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)