SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000238795
Gene: SCARNA12 Gene type: snoRNA
Strand: - External links:
Genomic region: chr12:6967337-6967606 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_040400024 chr12:6959710-6973446 Sample_02_0404 Mammary gland ZR-75-1_2 24 1 435 24 3 127 1493 PTPN6,PHB2,SCARNA12,MIR141,EMG1,MIR200C,C12ORF57,ATN1,LPCAT3,ENO2
SE_02_032400139 chr12:6959723-6972855 Sample_02_0324 Colon SW48 139 1 417 24 3 127 1493 PTPN6,PHB2,SCARNA12,MIR141,EMG1,MIR200C,C12ORF57,ATN1,LPCAT3,ENO2
SE_02_000200425 chr12:6959959-6972504 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 425 1 398 24 3 125 1434 PTPN6,PHB2,SCARNA12,MIR141,EMG1,MIR200C,C12ORF57,ATN1,LPCAT3,ENO2
SE_02_035200096 chr12:6960205-6973508 Sample_02_0352 Colon HCT116 96 1 419 24 3 117 1378 PTPN6,PHB2,SCARNA12,MIR141,EMG1,MIR200C,C12ORF57,ATN1,LPCAT3,ENO2
SE_01_003400171 chr12:6960400-6972503 Sample_01_0034 Colon HCT116 171 1 383 24 3 113 1324 PTPN6,PHB2,SCARNA12,MIR141,EMG1,MIR200C,C12ORF57,ATN1,LPCAT3,ENO2
SE_04_000200740 chr12:6960497-6972660 Sample_04_0002 Blood cold shocked K562 740 1 383 22 2 112 1297 MIR200C,PTPN6,PHB2,EMG1,SCARNA12,MIR141,ENO2,RNU7-1,C12ORF57,ATN1,LPCAT3
SE_02_042200525 chr12:6960582-6972357 Sample_02_0422 Lung NCI-H1299_EGFP-NEO_reporter_cells_DACSB 525 1 372 21 2 112 1285 PTPN6,PHB2,SCARNA12,MIR141,EMG1,MIR200C,C12ORF57,ATN1,LPCAT3,ENO2
Genomic distribution of SEs associated with SCARNA12
Genome Browser

The strength of the tissue affected by the gene

Expression of SCARNA12

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)