SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000117152
Gene: RGS4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:163068775-163076802 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_072300008 chr1:162843668-163107448 Sample_02_0723 Pancreas MIAPaca2 WT 8 50 7510 321 46 555 969 RGS4,C1ORF110,RGS5,HSD17B7,C1orf110
SE_02_127900390 chr1:162957552-162999776 Sample_02_1279 Bone Mesenchymal stem cells 390 11 1174 65 9 98 0 RGS4
SE_02_008700092 chr1:162960776-163003202 Sample_02_0087 Pancreas MiaPaca2 92 1 1186 63 9 101 0 RGS4
SE_02_011000363 chr1:162970656-163000068 Sample_02_0110 Ovaries IOE11 363 2 815 53 5 91 0 RGS4
SE_02_086700983 chr1:162971630-162999931 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 983 26 784 50 4 87 0 RGS4
SE_01_005600994 chr1:162971831-162999116 Sample_01_0056 Bone osteoblast 994 4 759 50 4 85 0 RGS4
SE_02_143601335 chr1:162971833-163001147 Sample_02_1436 Liver LSEC-Ctrl 1335 8 812 51 4 90 0 RGS4
SE_02_087900915 chr1:162971850-162999465 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 915 7 765 50 4 87 0 RGS4
SE_02_138300547 chr1:162971908-162992881 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 547 11 610 40 4 63 0 RGS4
SE_02_138100578 chr1:162971932-162993232 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 578 12 618 41 4 66 0 RGS4
SE_02_143801532 chr1:162971953-162999327 Sample_02_1438 Liver LSEC 1532 8 761 50 4 85 0 RGS4
SE_02_135500208 chr1:162972036-162998801 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 208 6 748 50 4 83 0 RGS4
SE_02_137800505 chr1:162972126-162998677 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 505 11 745 50 4 82 0 RGS4
SE_02_063800743 chr1:162972201-162998837 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 743 14 747 50 4 82 0 RGS4
SE_02_157100634 chr1:162972262-162998897 Sample_02_1571 Fibroblast Fibroblast cells 634 5 746 50 4 82 0 RGS4
SE_02_009100629 chr1:162972276-162998692 Sample_02_0091 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_0 629 4 743 50 4 82 0 RGS4
SE_02_047400432 chr1:162972317-162998749 Sample_02_0474 Fibroblast umbilical cord Fibroblast 432 6 745 50 4 82 0 RGS4
SE_02_135600403 chr1:162972344-162998410 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 403 5 733 50 4 82 0 RGS4
SE_02_008800781 chr1:162972410-162998527 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 781 6 738 50 4 82 0 RGS4
SE_02_071200611 chr1:162972441-162989048 Sample_02_0712 Pancreas BxPC3_sgNEG 611 3 491 29 3 47 0 RGS4
SE_02_132800419 chr1:162972449-162999121 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 419 11 749 50 4 83 0 RGS4
SE_02_022900153 chr1:162972560-162998122 Sample_02_0229 Umbilical cord ID01 153 9 723 49 4 82 0 RGS4
SE_02_138000358 chr1:162972580-162998633 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 358 14 735 50 4 82 0 RGS4
SE_02_136800129 chr1:162972595-162993443 Sample_02_1368 Pancreas MIA PaCa-2-untreated 129 11 607 41 4 65 0 RGS4
SE_02_087801336 chr1:162972607-162998898 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1336 6 737 49 4 82 0 RGS4
SE_02_156800848 chr1:162972808-162998346 Sample_02_1568 Heart Cardiac progenitor cells 848 5 712 48 4 82 0 RGS4
SE_02_113300460 chr1:162972941-162998809 Sample_02_1133 Liver Hepatic stellate cells 460 4 722 48 4 81 0 RGS4
SE_02_070700757 chr1:162973049-162988638 Sample_02_0707 Pancreas BxPC3 WT 757 5 455 27 3 46 0 RGS4
SE_02_018200841 chr1:162980442-162998148 Sample_02_0182 melanoma LOX-IMVI 841 3 491 39 1 62 0 RGS4
SE_02_035700046 chr1:163000791-163084947 Sample_02_0357 Colon Colo320 46 11 2560 20 11 175 564 RGS4
SE_02_138300099 chr1:163014549-163077297 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 99 18 1893 6 9 156 564 RGS4
SE_02_008700105 chr1:163021589-163058354 Sample_02_0087 Pancreas MiaPaca2 105 1 1125 3 2 86 0 RGS4
SE_02_138100234 chr1:163023807-163055484 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 234 14 975 3 2 70 0 RGS4
SE_02_139600016 chr1:163023909-163084842 Sample_02_1396 Colon COLO320HSR_DMSO 16 10 1852 19 11 161 564 RGS4
SE_02_138200215 chr1:163026067-163095197 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 215 25 2064 40 12 167 564 RGS4
SE_02_136800072 chr1:163026121-163051556 Sample_02_1368 Pancreas MIA PaCa-2-untreated 72 12 788 3 2 60 0 RGS4
SE_02_031200236 chr1:163028155-163125463 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 236 9 2872 92 16 193 564 RGS4
SE_02_127900244 chr1:163028807-163105717 Sample_02_1279 Bone Mesenchymal stem cells 244 18 2292 56 13 176 564 RGS4
SE_02_015000221 chr1:163029274-163051912 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 221 2 715 3 2 49 0 RGS4
SE_02_031900434 chr1:163031528-163077550 Sample_02_0319 Neuroblastoma NB-EBc1 434 7 1387 3 9 138 564 RGS4
SE_02_030400096 chr1:163031790-163077847 Sample_02_0304 Neuroblastoma N206 96 7 1393 4 9 138 564 RGS4
SE_02_025300302 chr1:163031844-163073046 Sample_02_0253 Brain BE2C_DMSO 302 5 1247 2 8 103 255 RGS4
SE_02_034100129 chr1:163032677-163077626 Sample_02_0341 Autonomic ganglia SH-SY5Y_untreat 129 4 1355 4 9 134 564 RGS4
SE_02_007600484 chr1:163032798-163051763 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 484 4 589 1 2 40 0 RGS4
SE_02_057100764 chr1:163033051-163049923 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 764 7 533 1 2 38 0 RGS4
SE_02_156800990 chr1:163034032-163039048 Sample_02_1568 Heart Cardiac progenitor cells 990 2 202 1 0 7 0 RGS4
SE_02_030000365 chr1:163034145-163077909 Sample_02_0300 Neuroblastoma CLB-PE 365 5 1322 4 9 132 564 RGS4
SE_02_030700501 chr1:163034318-163051763 Sample_02_0307 Neuroblastoma SJNB12 501 3 547 1 2 38 0 RGS4
SE_02_071200649 chr1:163034477-163093259 Sample_02_0712 Pancreas BxPC3_sgNEG 649 9 1738 32 12 142 564 RGS4
SE_02_057200590 chr1:163034540-163049811 Sample_02_0572 Brain LN229_1_mM_glucose 590 7 481 1 2 36 0 RGS4
SE_02_113300297 chr1:163034634-163086204 Sample_02_1133 Liver Hepatic stellate cells 297 9 1558 18 11 141 564 RGS4
SE_02_030800133 chr1:163034897-163073564 Sample_02_0308 Neuroblastoma SJNB1 133 4 1165 2 8 101 288 RGS4
SE_02_047401022 chr1:163034934-163085778 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1022 12 1536 18 11 140 564 RGS4
SE_02_047100120 chr1:163034985-163077452 Sample_02_0471 Brain Kelly DMSO 120 7 1272 3 9 132 564 RGS4
SE_02_054100201 chr1:163035088-163077287 Sample_02_0541 Brain Kelly_NaiveJQ1 201 10 1263 3 9 132 564 RGS4
SE_02_150000084 chr1:163035200-163077060 Sample_02_1500 Brain KELLY_untreat 84 9 1249 3 9 132 564 RGS4
SE_02_033800210 chr1:163035212-163073406 Sample_02_0338 Neuroblastoma BE2 210 4 1147 2 8 101 275 RGS4
SE_02_057000310 chr1:163035297-163066714 Sample_02_0570 Brain LN229_10_mM_glucose 310 10 947 2 6 75 0 RGS4
SE_02_110400466 chr1:163035837-163075747 Sample_02_1104 Brain NB-69 466 11 1198 2 8 119 476 RGS4
SE_02_011001008 chr1:163053861-163086769 Sample_02_0110 Ovaries IOE11 1008 3 970 17 9 104 564 RGS4
SE_02_003300296 chr1:163053913-163107073 Sample_02_0033 Pancreas pancreatic-islets-F 296 5 1529 53 11 124 564 RGS4
SE_02_126700910 chr1:163057092-163094920 Sample_02_1267 Bone Im-GCT-4072_G34W 910 7 1096 35 10 97 564 RGS4
SE_02_126300586 chr1:163057121-163094753 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 586 7 1090 34 10 96 564 RGS4
SE_02_008700429 chr1:163059650-163078136 Sample_02_0087 Pancreas MiaPaca2 429 1 542 2 7 69 564 RGS4
SE_02_031700960 chr1:163060839-163091630 Sample_02_0317 Neuroblastoma GICAN 960 4 895 26 10 78 564 RGS4
SE_02_022000074 chr1:163067426-163077420 Sample_02_0220 Brain BE2C_1 74 1 302 1 3 53 564 RGS4
SE_02_033900096 chr1:163067644-163077357 Sample_02_0339 Neuroblastoma NGP 96 1 282 1 3 47 564 RGS4
SE_02_007500169 chr1:163067680-163077533 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 169 2 292 1 3 47 564 RGS4
SE_02_030101204 chr1:163067696-163095551 Sample_02_0301 Neuroblastoma GIMEN 1204 4 806 36 6 65 564 RGS4
SE_01_011100539 chr1:163068093-163086701 Sample_01_0111 Brain SK-N-SH 539 4 561 16 5 56 564 RGS4
SE_02_010800791 chr1:163068224-163083917 Sample_02_0108 Fallopian tube FT246 791 3 489 14 5 51 564 RGS4
SE_02_138100688 chr1:163068321-163095258 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 688 7 783 36 6 60 564 RGS4
SE_02_132800824 chr1:163068437-163086657 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 824 6 549 16 5 56 561 RGS4
SE_02_108500413 chr1:163068519-163090825 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 413 10 655 26 6 57 559 RGS4
SE_02_113900647 chr1:163068606-163091547 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 647 3 668 26 6 57 556 RGS4
SE_02_136800341 chr1:163068962-163075478 Sample_02_1368 Pancreas MIA PaCa-2-untreated 341 4 188 0 2 28 396 RGS4
SE_02_113800955 chr1:163069134-163087153 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 955 4 531 17 5 55 504 RGS4
SE_02_154600118 chr1:163069444-163106918 Sample_02_1546 Gastrointestinal Stromal GIST-430/654 118 12 1069 52 7 71 469 RGS4
SE_02_017300708 chr1:163071848-163091631 Sample_02_0173 Lung IMR-90_senescent 708 4 576 26 4 45 431 RGS4
SE_02_077600178 chr1:163085975-163107099 Sample_02_0776 Pancreas EndoC-BH1 178 4 580 37 2 21 0 RGS4
SE_02_077501387 chr1:163090440-163105328 Sample_02_0775 Pancreas EndoC-BH1_SE 1387 4 428 28 1 14 0 RGS4
SE_02_150000432 chr1:163104714-163126446 Sample_02_1500 Brain KELLY_untreat 432 6 613 39 4 17 0 RGS4,LOC101928404
Genomic distribution of SEs associated with RGS4
Genome Browser

The strength of the tissue affected by the gene

Expression of RGS4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)