SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000139174
Gene: PRICKLE1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:42456757-42590355 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_057900057 chr12:42373902-42486798 Sample_02_0579 Blood HEL_sgNeg2 57 64 3050 311 18 187 1894 PPHLN1,PRICKLE1,ZCRB1
SE_02_122900308 chr12:42385739-42455994 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 308 36 1907 215 7 49 646 PPHLN1,PRICKLE1,YAF2,ZCRB1
SE_02_082100232 chr12:42402741-42452914 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 232 9 1383 157 5 38 526 PPHLN1,PRICKLE1
SE_02_117000013 chr12:42403108-42445566 Sample_02_1170 Blood HEL92.1.7 13 24 1181 136 4 31 189 PPHLN1,PRICKLE1
SE_02_117100062 chr12:42408540-42447517 Sample_02_1171 Blood HEL92.1.7_Drug resistant 62 24 1119 129 4 28 426 PPHLN1,PRICKLE1
SE_02_082000369 chr12:42408820-42427752 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 369 4 523 77 3 11 0 PPHLN1,PRICKLE1
SE_02_082200128 chr12:42408884-42444357 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 128 9 1000 124 4 28 119 PPHLN1,PRICKLE1
SE_02_062000497 chr12:42409782-42427675 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 497 7 492 73 3 11 0 PPHLN1,PRICKLE1
SE_02_082300296 chr12:42409888-42427902 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 296 6 492 73 3 11 0 PPHLN1,PRICKLE1
SE_02_054500973 chr12:42417156-42444690 Sample_02_0545 Bone marrow K562 WT 973 7 778 89 2 27 119 PPHLN1,PRICKLE1
SE_02_033600593 chr12:42433612-42451865 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 593 1 502 40 2 23 526 PPHLN1,PRICKLE1
SE_02_057601134 chr12:42440184-42451238 Sample_02_0576 Blood HEL_sgLKB1e2 1134 1 314 19 1 19 526 PPHLN1,PRICKLE1
SE_02_012100168 chr12:42444428-42476132 Sample_02_0121 Haematopoietic and lymphoid tissue SUDHL-4 168 3 871 73 7 101 1272 PPHLN1,PRICKLE1
SE_02_099900327 chr12:42444798-42481594 Sample_02_0999 Lymphoma OCI-LY1_966 327 22 1023 89 8 105 1272 PPHLN1,PRICKLE1
SE_02_130400709 chr12:42445587-42475363 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 709 12 802 70 7 101 1195 PPHLN1,PRICKLE1
SE_02_099800334 chr12:42445635-42479006 Sample_02_0998 Lymphoma OCI-LY1_DMSO 334 18 915 80 7 102 1192 PPHLN1,PRICKLE1
SE_02_073000318 chr12:42445865-42482868 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 318 10 1015 92 8 113 1167 PPHLN1,PRICKLE1
SE_02_072900452 chr12:42445927-42479261 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 452 16 914 80 7 102 1160 PPHLN1,PRICKLE1
SE_02_012300261 chr12:42446121-42485411 Sample_02_0123 Haematopoietic and lymphoid tissue GRANTA-519 261 5 1078 99 11 129 1380 PPHLN1,PRICKLE1
SE_02_073300544 chr12:42446142-42475820 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 544 11 798 70 7 101 1115 PPHLN1,PRICKLE1
SE_02_072800346 chr12:42446210-42481847 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 346 11 972 88 8 105 1103 PPHLN1,PRICKLE1
SE_02_073200520 chr12:42446242-42475985 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 520 8 803 71 7 101 1100 PPHLN1,PRICKLE1
SE_02_073100302 chr12:42446321-42484145 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 302 11 1031 93 8 113 1346 PPHLN1,PRICKLE1
SE_02_076100060 chr12:42447183-42591612 Sample_02_0761 Ovary BIN-67_SMARCA4.T910M 60 74 3652 180 27 419 1473 PPHLN1,PRICKLE1
SE_02_074600232 chr12:42450207-42515666 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 232 43 1832 131 20 193 1129 PRICKLE1
SE_02_092200570 chr12:42450721-42511402 Sample_02_0922 Heart fetal heart_PCW10_12434 570 14 1697 124 20 191 1129 PRICKLE1
SE_02_074700580 chr12:42451960-42511189 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 580 50 1654 120 20 191 1129 PRICKLE1
SE_02_092100405 chr12:42460205-42511988 Sample_02_0921 Heart embryonic heart_CS22 405 29 1433 95 19 168 731 PRICKLE1
SE_01_002300292 chr12:42465681-42511893 Sample_01_0023 Embryo cardiac-muscle-cell 292 7 1288 90 18 137 518 PRICKLE1
SE_02_075000702 chr12:42467226-42484934 Sample_02_0750 Lymphoma Rec-1_GSI 702 5 488 49 6 63 473 PRICKLE1
SE_02_092500644 chr12:42467745-42493106 Sample_02_0925 Heart fetal heart_PCW17_12570 644 11 705 57 10 86 473 PRICKLE1
SE_02_092300739 chr12:42468035-42509592 Sample_02_0923 Heart fetal heart_PCW10_12522 739 15 1162 80 17 127 473 PRICKLE1
SE_02_092400864 chr12:42468328-42509370 Sample_02_0924 Heart fetal heart_PCW10_12569 864 18 1150 78 17 127 473 PRICKLE1
SE_02_033000155 chr12:42468352-42488715 Sample_02_0330 Endoderm MHG 155 4 564 51 8 79 473 PRICKLE1
SE_02_038200827 chr12:42471194-42509796 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 827 7 1083 74 15 100 332 PRICKLE1
SE_02_074800507 chr12:42472733-42485783 Sample_02_0748 Mammary gland HCC1599_WO 507 4 382 37 5 38 264 PRICKLE1
SE_02_005701109 chr12:42472840-42484880 Sample_02_0057 Mammary gland vHMEC 1109 5 342 35 4 31 264 PRICKLE1
SE_02_064501837 chr12:42474031-42485080 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1837 3 314 31 4 30 264 PRICKLE1
SE_02_074900843 chr12:42474055-42485515 Sample_02_0749 Mammary gland HCC1599_GSI 843 2 331 33 5 35 264 PRICKLE1
SE_02_006600489 chr12:42480625-42487365 Sample_02_0066 Embryo AzL-S_phase 489 2 186 11 3 32 264 PRICKLE1
SE_02_130900954 chr12:42480633-42484892 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 954 1 115 9 2 23 264 PRICKLE1
SE_02_086100631 chr12:42481235-42486739 Sample_02_0861 iPSCs SAH_WT 631 2 157 11 3 32 264 PRICKLE1
SE_02_064601023 chr12:42481368-42485183 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1023 1 105 9 2 24 264 PRICKLE1
SE_02_074700311 chr12:42524905-42609239 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 311 50 2007 55 7 246 219 PRICKLE1,LOC101927058
SE_01_008801059 chr12:42533218-42591400 Sample_01_0088 Tibial nerve tibial-nerve 1059 11 1318 31 3 206 219 PRICKLE1
SE_02_074600386 chr12:42548491-42605798 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 386 15 1314 28 2 215 219 PRICKLE1,LOC101927058
SE_02_092100462 chr12:42556164-42591415 Sample_02_0921 Heart embryonic heart_CS22 462 22 744 13 0 156 168 PRICKLE1
SE_02_092200748 chr12:42556771-42589720 Sample_02_0922 Heart fetal heart_PCW10_12434 748 14 702 13 0 144 101 PRICKLE1
SE_02_038200261 chr12:42556805-42607323 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 261 7 1153 28 2 186 168 PRICKLE1
SE_02_038100371 chr12:42556995-42599479 Sample_02_0381 Heart purified cardiomyocyte WT 371 6 934 18 2 169 168 PRICKLE1
SE_02_092500822 chr12:42557056-42589723 Sample_02_0925 Heart fetal heart_PCW17_12570 822 12 700 13 0 143 102 PRICKLE1
SE_02_080800767 chr12:42557283-42593609 Sample_02_0808 Ovary RMG1_ARID1A KO 767 32 781 14 0 157 168 PRICKLE1
SE_02_092300818 chr12:42557340-42589690 Sample_02_0923 Heart fetal heart_PCW10_12522 818 15 689 13 0 143 92 PRICKLE1
SE_02_030101130 chr12:42564501-42591076 Sample_02_0301 Neuroblastoma GIMEN 1130 5 568 12 0 133 168 PRICKLE1
SE_02_095001284 chr12:42565141-42591181 Sample_02_0950 Umbilical vein HUVEC_WT 1284 12 561 12 0 124 168 PRICKLE1
SE_02_083100996 chr12:42565148-42591194 Sample_02_0831 Umblical vein HUVECs_TNF0min 996 12 561 12 0 124 168 PRICKLE1
SE_02_110400752 chr12:42566150-42597427 Sample_02_1104 Brain NB-69 752 10 710 16 2 130 168 PRICKLE1,LOC101927058
SE_01_011200334 chr12:42569613-42590823 Sample_01_0112 Embryonic kidney HEK293_encode 334 3 446 10 0 122 168 PRICKLE1
SE_02_074801025 chr12:42578033-42591243 Sample_02_0748 Mammary gland HCC1599_WO 1025 2 277 6 0 94 168 PRICKLE1
SE_02_038200388 chr12:42659671-42684465 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 388 2 697 15 2 93 0 PRICKLE1
SE_02_016600515 chr12:42727791-42762960 Sample_02_0166 Mammary gland HCC1954_Parental 515 3 936 36 8 128 0 PRICKLE1
SE_02_016700088 chr12:42727791-42762960 Sample_02_0167 Mammary gland HCC1954_LCC2 88 3 936 36 8 128 0 PRICKLE1
SE_02_038200155 chr12:42729436-42800411 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 155 5 1862 168 13 238 0 PRICKLE1
SE_02_030100149 chr12:42778860-42874747 Sample_02_0301 Neuroblastoma GIMEN 149 14 2589 178 8 200 0 PRICKLE1
SE_02_003801667 chr12:42789880-42813082 Sample_02_0038 Embryo DE 1667 5 606 50 2 60 0 PRICKLE1
SE_02_021000370 chr12:42918134-42986094 Sample_02_0210 Lung MRC-5_N_1DPT 370 13 1787 32 1 198 0 PRICKLE1
SE_02_010800529 chr12:42956589-42981273 Sample_02_0108 Fallopian tube FT246 529 5 627 15 0 98 0 PRICKLE1
SE_02_011400462 chr12:42957259-42993579 Sample_02_0114 Mammary gland CAL51 462 12 932 18 0 151 0 PRICKLE1
SE_02_016700556 chr12:42957532-42962728 Sample_02_0167 Mammary gland HCC1954_LCC2 556 1 130 4 0 10 0 PRICKLE1
SE_02_003000482 chr12:42958606-42963534 Sample_02_0030 Kidney human kidney proximal tubule cells 482 3 131 5 0 11 0 PRICKLE1
SE_02_030600422 chr12:42960383-42990307 Sample_02_0306 Autonomic ganglia SH-SY5Y 422 4 752 13 0 134 0 PRICKLE1
Genomic distribution of SEs associated with PRICKLE1
Genome Browser

The strength of the tissue affected by the gene

Expression of PRICKLE1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)