SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000175895
Gene: PLEKHF2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr8:95133785-95156685 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_133000270 chr8:95073267-95135912 Sample_02_1330 Blood AMU-AML1 270 19 1624 216 5 51 297 PLEKHF2,MIR3150B,NDUFAF6,MIR3150A
SE_02_039400079 chr8:95083775-95153404 Sample_02_0394 Mammary gland T-47D_2 79 15 1763 221 5 55 186 PLEKHF2,MIR3150B,MIR3150
SE_02_010500241 chr8:95084490-95144704 Sample_02_0105 Skin neonatal_keratinocytes 241 7 1530 193 5 52 186 PLEKHF2,MIR3150B,MIR3150
SE_02_108700049 chr8:95084667-95144168 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 49 14 1514 190 5 52 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_108600059 chr8:95084728-95144450 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 59 16 1513 190 5 52 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_040300209 chr8:95084753-95144279 Sample_02_0403 Mammary gland T-47D_untreat 209 8 1512 190 5 52 186 PLEKHF2,MIR3150B,MIR3150
SE_02_053200073 chr8:95084905-95153593 Sample_02_0532 Mammary gland T47D 73 23 1739 219 5 56 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_108900118 chr8:95084929-95143505 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 118 16 1491 189 5 52 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_109200164 chr8:95084984-95144076 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 164 17 1500 189 5 52 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_123400240 chr8:95085174-95143753 Sample_02_1234 Mammary gland T47D_Full 240 16 1488 189 5 52 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_007900069 chr8:95085179-95139586 Sample_02_0079 Mammary gland T-47D_1 69 11 1390 181 5 52 186 PLEKHF2,MIR3150B,MIR3150
SE_02_122900683 chr8:95086205-95152789 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 683 17 1686 211 5 54 186 PLEKHF2,MIR3150B,MIR3150A,NDUFAF6,C8orf37,CCNE2
SE_02_044700360 chr8:95087668-95137290 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 360 10 1272 162 5 52 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_153900864 chr8:95087898-95131040 Sample_02_1539 Nasopharyngeal C666-1 864 18 1132 145 5 26 0 PLEKHF2,MIR3150B,MIR3150A
SE_02_044500787 chr8:95087938-95182169 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 787 30 2355 231 6 118 389 PLEKHF2,MIR3150B,MIR3150A,LINC01298
SE_02_064800664 chr8:95087958-95137072 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 664 14 1251 158 5 52 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_115500104 chr8:95089708-95191534 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 104 16 2610 236 5 131 389 PLEKHF2,MIR3150B,MIR3150A,LINC01298
SE_02_020200463 chr8:95092500-95114501 Sample_02_0202 Stomach YCC7 463 7 595 81 3 13 0 PLEKHF2,MIR3150B,MIR3150
SE_02_020800278 chr8:95093123-95114488 Sample_02_0208 Stomach YCC3 278 5 578 76 3 13 0 PLEKHF2,MIR3150B,MIR3150
SE_02_154100549 chr8:95096117-95152238 Sample_02_1541 Nasopharyngeal HNE1 549 16 1387 154 3 54 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_076500154 chr8:95096139-95150337 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 154 14 1335 146 3 54 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_081700977 chr8:95097382-95116642 Sample_02_0817 Ovary Epithelial ovarian cancer 977 5 520 61 3 20 0 PLEKHF2,MIR3150B,MIR3150A
SE_02_077501359 chr8:95097476-95145815 Sample_02_0775 Pancreas EndoC-BH1_SE 1359 11 1200 123 3 52 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_125800996 chr8:95097550-95115115 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 996 5 482 59 3 17 0 PLEKHF2,MIR3150B,MIR3150A
SE_01_005800066 chr8:95098441-95115998 Sample_01_0058 Prostate PC-3 66 2 470 57 3 18 0 PLEKHF2,MIR3150B,MIR3150
SE_02_071800438 chr8:95098675-95114935 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 438 4 439 52 3 15 0 PLEKHF2,MIR3150B,MIR3150A
SE_02_127500548 chr8:95098744-95114483 Sample_02_1275 Prostate PC3_Vorinostat 548 10 430 49 2 11 0 PLEKHF2,MIR3150B,MIR3150A
SE_02_127400307 chr8:95098773-95115358 Sample_02_1274 Prostate PC3_DMSO 307 10 448 54 3 17 0 PLEKHF2,MIR3150B,MIR3150A
SE_02_018400452 chr8:95099081-95138350 Sample_02_0184 Skin SKMEL30 452 7 981 101 3 50 186 PLEKHF2,MIR3150B,MIR3150
SE_02_019600327 chr8:95099139-95114650 Sample_02_0196 Stomach NCC59 327 4 421 49 2 15 0 PLEKHF2,MIR3150B,MIR3150
SE_02_156400186 chr8:95099390-95114386 Sample_02_1564 Gastrointestinal Stromal GIST-430 186 4 414 47 2 11 0 PLEKHF2,MIR3150B,MIR3150A
SE_01_000200078 chr8:95099478-95115145 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 78 2 424 52 3 15 0 PLEKHF2,MIR3150B,MIR3150
SE_02_077400116 chr8:95099497-95115493 Sample_02_0774 Prostate 22Rv1_delSite1_Clone11/12-D8 116 2 431 52 3 18 0 PLEKHF2,MIR3150B,MIR3150A
SE_01_000100079 chr8:95099520-95115728 Sample_01_0001 Prostate 22Rv1 79 3 433 52 3 18 0 PLEKHF2,MIR3150B,MIR3150
SE_02_077200092 chr8:95099555-95115316 Sample_02_0772 Prostate 22Rv1_delSite1_Clone11/12-F6 92 7 424 52 3 15 0 PLEKHF2,MIR3150B,MIR3150A
SE_02_048000612 chr8:95099567-95152003 Sample_02_0480 Gingival epithelial HGEP 612 14 1287 138 3 52 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_077300099 chr8:95099880-95115347 Sample_02_0773 Prostate 22Rv1_delSite4_Clone22/23-F8 99 4 413 50 3 14 0 PLEKHF2,MIR3150B,MIR3150A
SE_02_039601543 chr8:95110749-95142661 Sample_02_0396 Skin NHEK-D 1543 7 754 72 1 41 186 PLEKHF2,MIR3150B,MIR3150
SE_01_005300080 chr8:95112415-95183790 Sample_01_0053 Haematopoietic and lymphoid tissue OCI-LY1 80 11 1728 126 2 107 389 PLEKHF2,MIR3150B,MIR3150
SE_02_078400811 chr8:95114155-95146119 Sample_02_0784 Blood OSU-CLL 811 12 741 69 1 40 186 PLEKHF2,MIR3150B,MIR3150A
SE_02_115200043 chr8:95114427-95191128 Sample_02_1152 Lymphoma RL_WT_gRNA1 43 9 1928 142 2 118 389 PLEKHF2,MIR3150B,MIR3150A,LINC01298
SE_02_028800147 chr8:95114542-95182449 Sample_02_0288 Tonsil CB5_H3K27Ac 147 9 1638 121 2 105 389 PLEKHF2,MIR3150B,MIR3150
SE_02_106500056 chr8:95114603-95195913 Sample_02_1065 Lymphoma KARPAS-422_DMSO_8d 56 27 2056 149 2 121 389 PLEKHF2,MIR3150B,MIR3150A,LINC01298
SE_02_130200058 chr8:95114688-95191009 Sample_02_1302 Lymphoma RL DMSO 58 15 1920 142 2 114 389 PLEKHF2,MIR3150B,MIR3150A,LINC01298
SE_01_002000151 chr8:95115060-95185163 Sample_01_0020 Blood B-cell 151 6 1703 120 1 105 389 PLEKHF2,MIR3150B,MIR3150
SE_01_008400816 chr8:95115220-95182663 Sample_01_0084 Spleen spleen 816 17 1627 117 1 101 389 PLEKHF2,MIR3150B,MIR3150
SE_02_142901029 chr8:95115334-95155918 Sample_02_1429 Blood GM12878_WT 1029 11 949 90 0 66 338 PLEKHF2,MIR3150B,MIR3150A,C8orf37
SE_02_109800732 chr8:95115548-95137965 Sample_02_1098 Blood THP1_DMSO_noPMA 732 6 531 46 0 32 186 PLEKHF2,MIR3150B,MIR3150A
SE_01_005500275 chr8:95116511-95191964 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 275 10 1899 136 1 111 389 PLEKHF2,MIR3150B,MIR3150
SE_02_149301059 chr8:95123676-95138293 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 1059 4 311 31 0 30 186 PLEKHF2
SE_02_099900115 chr8:95125200-95168348 Sample_02_0999 Lymphoma OCI-LY1_966 115 20 966 88 0 89 389 PLEKHF2,LINC01298
SE_02_099800223 chr8:95125201-95168326 Sample_02_0998 Lymphoma OCI-LY1_DMSO 223 30 964 88 0 89 389 PLEKHF2,LINC01298
SE_01_006700182 chr8:95126460-95167449 Sample_01_0067 Peritoneal effusion: derived from metastatic site: peritoneal cavity SUDHL6 182 1 912 85 0 84 389 PLEKHF2
SE_02_146800466 chr8:95126500-95168816 Sample_02_1468 Blood HUDEP-2_WT 466 11 948 87 0 85 389 PLEKHF2,LINC01298
SE_02_021300276 chr8:95128355-95191781 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 276 6 1572 110 1 105 389 PLEKHF2
SE_02_012100157 chr8:95128416-95161206 Sample_02_0121 Haematopoietic and lymphoid tissue SUDHL-4 157 1 719 70 0 66 389 PLEKHF2
SE_02_115400104 chr8:95128598-95158352 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 104 1 653 67 0 64 389 PLEKHF2
SE_01_004000032 chr8:95128602-95196598 Sample_01_0040 Haematopoietic and lymphoid tissue Karpas-422 32 3 1712 119 2 108 389 PLEKHF2
SE_02_115300120 chr8:95128630-95157246 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 120 1 629 65 0 64 389 PLEKHF2
SE_02_011700023 chr8:95128631-95196346 Sample_02_0117 Haematopoietic and lymphoid tissue KARPAS-422 23 8 1696 119 1 108 389 PLEKHF2
SE_02_046000672 chr8:95128882-95151698 Sample_02_0460 Blood ME-1_I-10-49_6h 672 10 501 57 0 28 186 PLEKHF2
SE_02_122500144 chr8:95129060-95191069 Sample_02_1225 Bone marrow RAJI 144 23 1546 109 1 105 389 PLEKHF2,LINC01298
SE_02_045900813 chr8:95129127-95149894 Sample_02_0459 Blood ME-1_DMSO_6h 813 8 453 49 0 28 186 PLEKHF2
SE_02_064501944 chr8:95129163-95136140 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1944 2 140 15 0 25 186 PLEKHF2
SE_00_000500227 chr8:95129199-95182910 Sample_00_0005 Blood B-cell 227 12 1273 89 1 92 389 PLEKHF2
SE_02_094800855 chr8:95129385-95152294 Sample_02_0948 Pharyng Detroit562 855 6 507 58 0 28 186 PLEKHF2
SE_02_107700291 chr8:95129410-95138158 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 291 3 173 18 0 26 186 PLEKHF2
SE_02_002500120 chr8:95129903-95181745 Sample_02_0025 Blood CD19donorA 120 31 1216 86 1 92 389 PLEKHF2
SE_02_139300726 chr8:95130129-95143738 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 726 5 284 30 0 26 186 PLEKHF2
SE_02_115800173 chr8:95131111-95148040 Sample_02_1158 Mammary gland MCF7_siYTHDC1_E2 173 6 368 39 0 28 186 PLEKHF2
SE_02_040400047 chr8:95131273-95160620 Sample_02_0404 Mammary gland ZR-75-1_2 47 4 658 64 0 64 389 PLEKHF2
SE_02_062400231 chr8:95131936-95143872 Sample_02_0624 Mammary gland TAMR_VEH 231 3 262 27 0 26 186 PLEKHF2
SE_02_062300263 chr8:95131984-95144517 Sample_02_0623 Mammary gland TAMR_E2 263 5 268 27 0 26 186 PLEKHF2
SE_02_077800298 chr8:95132045-95138638 Sample_02_0778 Mammary gland MCF7_FASR 298 2 137 17 0 26 186 PLEKHF2
SE_02_136101332 chr8:95132121-95138343 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 1332 1 133 15 0 26 186 PLEKHF2
SE_02_109300607 chr8:95132261-95144011 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 607 6 261 27 0 26 186 PLEKHF2
SE_02_108800614 chr8:95132291-95143622 Sample_02_1088 Mammary gland T47D_shCtrl_45min 614 3 255 27 0 26 186 PLEKHF2
SE_02_098901611 chr8:95132615-95177368 Sample_02_0989 Kidney kidney cortex_WT 1611 19 1036 81 1 90 389 PLEKHF2,LINC01298
SE_02_108300967 chr8:95132858-95155495 Sample_02_1083 Macula macula 967 9 518 58 0 57 317 PLEKHF2
SE_02_146600628 chr8:95132880-95138249 Sample_02_1466 Blood HUDEP-2_BCL11AKO 628 2 116 15 0 26 186 PLEKHF2
SE_02_081700581 chr8:95132974-95138979 Sample_02_0817 Ovary Epithelial ovarian cancer 581 3 127 19 0 26 186 PLEKHF2
SE_02_122400813 chr8:95133702-95160215 Sample_02_1224 Bone marrow normal plasma cell 813 13 598 62 0 62 339 PLEKHF2
SE_02_130300252 chr8:95133745-95156624 Sample_02_1303 Lymphoma RL_tazemetostat 252 1 520 58 0 60 312 PLEKHF2
SE_02_109100468 chr8:95133749-95144025 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 468 4 223 26 0 24 126 PLEKHF2
SE_02_067100308 chr8:95133767-95144102 Sample_02_0671 Mammary gland breast cancer_DSG 308 3 225 26 0 24 121 PLEKHF2
SE_02_130400285 chr8:95133771-95157023 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 285 1 529 59 0 61 323 PLEKHF2
SE_02_076901114 chr8:95133772-95151781 Sample_02_0769 Ovary HEYA8 1114 8 414 52 0 25 120 PLEKHF2
SE_02_133800226 chr8:95133790-95151717 Sample_02_1338 Esophagus KYSE180 226 9 412 52 0 24 117 PLEKHF2
SE_01_009600149 chr8:95133791-95151643 Sample_01_0096 B-cell lymphoma DOHH2 149 1 409 52 0 24 116 PLEKHF2
SE_02_067000159 chr8:95133814-95139713 Sample_02_0670 Mammary gland breast cancer FA 159 3 123 18 0 20 105 PLEKHF2
Genomic distribution of SEs associated with PLEKHF2
Genome Browser

The strength of the tissue affected by the gene

Expression of PLEKHF2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)