SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000161217
Gene: PCYT1A Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:196214222-196287957 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104901009 chr3:196234039-196301056 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1009 36 1737 211 4 136 1181 PCYT1A,TCTEX1D2,TM4SF19,ZDHHC19,TM4SF19-AS1,SLC51A
SE_02_015000302 chr3:196246019-196319629 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 302 9 1846 218 1 85 769 TCTEX1D2,PCYT1A,ZDHHC19,OSTALPHA,TM4SF19
SE_02_082601431 chr3:196251843-196281027 Sample_02_0826 Stomach gastric tumor 1431 11 720 88 0 19 99 PCYT1A,ZDHHC19,TCTEX1D2,SLC51A,TM4SF19-AS1
SE_02_050600299 chr3:196253473-196288870 Sample_02_0506 Esophagus TE5_1 299 17 863 99 0 50 231 PCYT1A,TM4SF19,ZDHHC19,TCTEX1D2,TM4SF19-AS1,SLC51A
SE_02_051700297 chr3:196253473-196288874 Sample_02_0517 Esophagus TE5 297 18 863 99 0 50 231 PCYT1A,TM4SF19,ZDHHC19,TCTEX1D2,TM4SF19-AS1,SLC51A
SE_02_088601909 chr3:196258846-196289017 Sample_02_0886 Skin foreskin_ p63KLF4 1909 8 746 82 0 43 183 PCYT1A,TM4SF19,ZDHHC19,TCTEX1D2,TM4SF19-AS1,SLC51A
SE_02_059400575 chr3:196258847-196288874 Sample_02_0594 iPSC-derived neural progenitors 575 6 740 81 0 43 183 PCYT1A,TM4SF19,ZDHHC19,TCTEX1D2,TM4SF19-AS1,SLC51A
SE_02_050800165 chr3:196259095-196288859 Sample_02_0508 Esophagus TT_1 165 17 736 79 0 43 183 PCYT1A,TM4SF19,ZDHHC19,TCTEX1D2,TM4SF19-AS1,SLC51A
SE_02_051800165 chr3:196259095-196288859 Sample_02_0518 Esophagus TT_Esophagus carcinoma 165 17 736 79 0 43 183 PCYT1A,TM4SF19,ZDHHC19,TCTEX1D2,TM4SF19-AS1,SLC51A
SE_02_061800074 chr3:196266133-196289809 Sample_02_0618 Head and Neck HPV+ HNSCC_SCC-090 74 12 604 67 0 43 183 PCYT1A,TM4SF19,TCTEX1D2,SLC51A,TM4SF19-AS1
SE_02_153500312 chr3:196268248-196288045 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 312 4 492 55 0 37 183 PCYT1A,TCTEX1D2,TM4SF19-AS1
SE_02_076700877 chr3:196268485-196287681 Sample_02_0767 Ovary OVCA429 877 14 477 55 0 25 133 PCYT1A,TCTEX1D2,TM4SF19-AS1
SE_02_153700520 chr3:196274534-196288826 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 520 3 339 39 0 33 132 PCYT1A,TM4SF19,TCTEX1D2,TM4SF19-AS1
SE_02_146001270 chr3:196276956-196288783 Sample_02_1460 Blood Mutz-3 1270 6 278 33 0 33 132 PCYT1A,TM4SF19,TCTEX1D2,TM4SF19-AS1
Genomic distribution of SEs associated with PCYT1A
Genome Browser

The strength of the tissue affected by the gene

Expression of PCYT1A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)