Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_051800119 chr1:114740266-114758854 18588 119 4 455 36 0 68 161 CSDE1,NRAS,AMPD1,SIKE1
SE_02_051800143 chr1:115132483-115195193 62710 143 15 1651 82 11 209 0 TSPAN2
SE_02_051800086 chr1:115646799-115680367 33568 86 18 961 68 7 127 291 VANGL1
SE_02_051800189 chr1:116372479-116379585 7106 189 1 162 8 0 40 495 ATP1A1,ATP1A1-AS1
SE_02_051800179 chr1:150560535-150580551 20016 179 8 524 53 4 85 831 ADAMTSL4,MCL1,ADAMTSL4-AS1,ENSA,FALEC,MIR4257
SE_02_051800062 chr1:151968447-152003895 35448 62 19 849 132 1 101 465 S100A10,NBPF18P,S100A11
SE_02_051800139 chr1:152022448-152052536 30088 139 8 660 62 3 42 464 NBPF18P,S100A11,LOC100131107,TCHHL1,S100A10
SE_02_051800112 chr1:153553824-153582588 28764 112 8 817 49 1 67 406 S100A2,S100A6,S100A13,S100A4,S100A5,S100A1,S100A3,S100A14,LOC101928034,S100A16
SE_02_051800152 chr1:154995235-155018653 23418 152 15 518 25 2 636 1686 ZBTB7B,DCST2,CKS1B,PBXIP1,SHC1,PYGO2,LENEP,ADAM15,EFNA4,LOC100505666,MIR4258,FLAD1,DCST1
SE_02_051800160 chr1:156091058-156131066 40008 160 19 955 81 5 251 695 LMNA,LAMTOR2,RAB25,UBQLN4,SEMA4A,MEX3A
SE_02_051800092 chr1:15758282-15803065 44783 92 20 1235 107 2 49 1538 FBLIM1,UQCRHL,FLJ37453,SPEN,SLC25A34,TMEM82
SE_02_051800103 chr1:15815821-15852028 36207 103 16 1001 145 4 98 732 FLJ37453,SPEN,UQCRHL
SE_02_051800148 chr1:16139030-16189570 50540 148 23 1381 151 4 190 455 EPHA2,RSG1,ARHGEF19
SE_02_051800140 chr1:181077772-181142536 64764 140 24 1755 127 10 403 542 IER5,MR1,LOC101928973
SE_02_051800100 chr1:201254829-201319859 65030 100 27 1993 147 7 320 799 PKP1
SE_02_051800161 chr1:202005711-202087457 81746 161 31 2252 115 7 112 1641 RNPEP,ELF3,GPR37L1,MIR6740
SE_02_051800007 chr1:209354404-209436396 81992 7 26 2384 110 9 337 291 MIR205HG,MIR205
SE_02_051800076 chr1:214402475-214495219 92744 76 42 2719 106 6 131 424 PTPN14
SE_02_051800183 chr1:223699295-223748372 49077 183 24 1292 157 6 106 704 CAPN2,CAPN8
SE_02_051800134 chr1:234588824-234619368 30544 134 11 858 55 4 0 780 IRF2BP2,LOC101927787,LINC00184
SE_02_051800188 chr1:235047760-235093937 46177 188 14 659 70 1 31 0 LINC01348,SNORA14B,TOMM20
SE_02_051800056 chr1:26800255-26878019 77764 56 28 1783 134 1 246 1880 ZDHHC18,SFN,GPATCH3,NUDC,PIGV,NR0B2,GPN2
SE_02_051800090 chr1:27502662-27573184 70522 90 28 1811 104 4 959 1816 AHDC1,WASF2
SE_02_051800053 chr1:32711716-32780500 68784 53 36 1775 104 3 411 2364 KIAA1522,YARS,S100PBP,SYNC
SE_02_051800136 chr1:42923191-42968925 45734 136 26 1333 160 5 224 1262 SLC2A1-AS1,SLC2A1
SE_02_051800168 chr10:21314299-21373691 59392 168 20 1770 114 0 75 0 RNU6-15P
SE_02_051800057 chr10:21514529-21556335 41806 57 11 990 21 1 499 1379 MLLT10,SKIDA1,CASC10,MIR1915
SE_02_051800063 chr10:43383566-43421430 37864 63 14 1160 129 3 135 1044 HNRNPF,ZNF487,FXYD4
SE_02_051800190 chr10:46366766-46396925 30159 190 12 171 40 0 117 3038 FAM25BP,ANXA8L1,HNRNPA1P33,LINC00842
SE_02_051800127 chr10:47460228-47490196 29968 127 11 0 24 0 69 1900 ANXA8,FAM25C,FAM25G,AGAP9
SE_02_051800013 chr10:5523852-5623300 99448 13 39 3470 259 18 255 367 CALML3-AS1,CALML3,CALML5,ASB13
SE_02_051800155 chr10:69323617-69392538 68921 155 29 2100 159 10 0 1263 HK1,TACR2
SE_02_051800195 chr10:72292366-72349886 57520 195 21 1608 106 0 136 1313 DNAJB12,DDIT4
SE_02_051800163 chr10:75185242-75234230 48988 163 23 1380 108 1 79 860 VDAC2,COMTD1
SE_02_051800020 chr10:79066738-79210437 143699 20 69 4256 112 53 671 1288 ZMIZ1,ZMIZ1-AS1
SE_02_051800045 chr10:80444573-80510168 65595 45 27 1851 201 12 187 505 TSPAN14,LOC102723703,SH2D4B,FAM213A,LOC101929574
SE_02_051800147 chr10:93413439-93482789 69350 147 32 2001 224 8 160 389 MYOF,CEP55
SE_02_051800084 chr10:95209210-95320185 110975 84 47 2818 304 6 247 1844 ACSM6,SORBS1,PDLIM1
SE_02_051800175 chr11:1820069-1843271 23202 175 7 906 47 3 133 1828 TNNI2,SYT8,LSP1,MIR4298,MIR7847
SE_02_051800124 chr11:35138526-35192770 54244 124 23 1632 92 16 302 477 CD44,LOC100507144
SE_02_051800087 chr11:65416114-65455669 39555 87 17 1095 81 2 52 2791 NEAT1,MIR612,MALAT1,SLC25A45,FRMD8
SE_02_051800050 chr11:65470506-65509096 38590 50 17 1106 115 4 50 963 MALAT1,SCYL1,LTBP3,NEAT1,MIR612
SE_02_051800133 chr11:67054328-67083176 28848 133 12 771 56 1 91 665 RHOD,SYT12,MIR6860,KDM2A
SE_02_051800114 chr11:67371453-67376789 5336 114 1 103 11 0 99 309 CLCF1,LOC100130987,RAD9A,PPP1CA,TBC1D10C,POLD4,CARNS1
SE_02_051800192 chr11:68009715-68030514 20799 192 4 710 53 3 64 1995 ALDH3B1,NDUFS8,TCIRG1,MIR4691,MIR6753,UNC93B1,MIR7113
SE_02_051800015 chr11:69636658-69647466 10808 15 5 315 6 1 100 472 CCND1,ORAOV1
SE_02_051800093 chr11:70062201-70066134 3933 93 1 141 9 0 0 0 LOC101928443,ANO1-AS2,ANO1
SE_02_051800022 chr11:70122775-70185345 62570 22 20 1970 135 6 118 1589 ANO1,ANO1-AS2,FADD
SE_02_051800073 chr11:70200472-70205257 4785 73 2 142 2 0 11 217 FADD
SE_02_051800029 chr11:70397250-70409162 11912 29 7 325 16 0 27 400 CTTN
SE_02_051800171 chr11:76763180-76799254 36074 171 16 1057 96 2 129 904 LOC101928837,TSKU,GUCY2EP
SE_02_051800032 chr11:9739947-9776797 36850 32 13 956 127 1 112 1521 SWAP70,SBF2-AS1,LOC440028
SE_02_051800064 chr11:9800536-9863406 62870 64 22 1680 124 12 219 1097 SBF2,LOC101928008,SBF2-AS1,LOC440028
SE_02_051800146 chr12:121799647-121805764 6117 146 1 122 7 0 120 711 SETD1B,LINC01089,RHOF
SE_02_051800055 chr12:12715987-12727130 11143 55 3 323 20 2 154 598 CDKN1B,APOLD1,MIR613,GPR19
SE_02_051800065 chr12:27319855-27347023 27168 65 10 649 89 2 13 443 ARNTL2,STK38L
SE_02_051800003 chr12:27522984-27635419 112435 3 54 3150 329 9 228 268 PPFIBP1
SE_02_051800006 chr12:27963049-28001097 38048 6 8 1020 66 8 196 414 PTHLH
SE_02_051800080 chr12:28189729-28194695 4966 80 2 148 34 0 17 0 CCDC91
SE_02_051800038 chr12:32398529-32457694 59165 38 24 1544 266 1 0 0 FGD4
SE_02_051800104 chr12:32859566-32906994 47428 104 16 1199 42 5 0 487 PKP2
SE_02_051800027 chr12:50504482-50650849 146367 27 69 3551 332 0 114 258 DIP2B
SE_02_051800016 chr12:52143013-52189917 46904 16 16 1459 83 1 96 1272 KRT80,OR7E47P,LINC00592,KRT7,C12ORF80
SE_02_051800052 chr12:52857401-52880094 22693 52 6 703 118 0 51 0 KRT78,KRT4,KRT79,KRT8
SE_02_051800149 chr12:53217062-53236002 18940 149 9 430 32 0 369 670 RARG,MFSD5,ITGB7,CSAD,ESPL1,ZNF740
SE_02_051800030 chr12:6166892-6252949 86057 30 31 2805 239 12 172 790 CD9,VWF
SE_02_051800131 chr12:6323599-6346316 22717 131 10 668 53 14 118 1468 TNFRSF1A,PLEKHG6,LTBR,SCNN1A
SE_02_051800089 chr12:6362962-6390386 27424 89 11 806 58 5 98 1581 LTBR,SCNN1A,TNFRSF1A
SE_02_051800085 chr13:97250562-97343756 93194 85 43 2388 84 11 335 178 MBNL2
SE_02_051800157 chr14:105079352-105098134 18782 157 6 582 46 0 29 0 LOC102723354,GPR132
SE_02_051800196 chr14:22836047-22855257 19210 196 6 548 48 4 229 1455 MMP14,SLC7A7,REM2,LRP10,MRPL52
SE_02_051800081 chr14:22974285-22983548 9263 81 2 246 17 0 132 853 AJUBA,PRMT5,MIR4707,HAUS4,LOC101926933,C14ORF93
SE_02_051800173 chr14:23136684-23187139 50455 173 10 1338 98 2 229 1020 SLC7A8,C14ORF119,CEBPE,ACIN1
SE_02_051800130 chr14:31023972-31027904 3932 130 1 97 4 0 51 528 AP4S1,STRN3,MIR624
SE_02_051800034 chr14:34520270-34560137 39867 34 10 777 66 0 38 283 EAPP,RNVU1-18
SE_02_051800111 chr14:34865840-34876020 10180 111 2 260 31 2 25 318 BAZ1A
SE_02_051800151 chr14:35329498-35342964 13466 151 5 463 53 0 34 0 PSMA6
SE_02_051800091 chr14:35365157-35408757 43600 91 15 1408 209 10 200 620 NFKBIA
SE_02_051800037 chr14:36942367-36997363 54996 37 13 1538 108 8 328 31 MIR4503,SLC25A21
SE_02_051800059 chr14:61501736-61602733 100997 59 26 2834 137 31 298 1489 LOC101927780,FLJ22447,PRKCH
SE_02_051800109 chr14:76904601-76978190 73589 109 23 2021 122 5 233 0 IRF2BPL
SE_02_051800137 chr14:77004043-77046712 42669 137 15 1223 94 9 490 971 IRF2BPL,LOC283575,LOC102724190
SE_02_051800041 chr15:51981556-52103600 122044 41 42 3599 254 3 235 557 MAPK6,LEO1,BCL2L10
SE_02_051800079 chr15:60349773-60424689 74916 79 26 2032 149 7 238 1235 ANXA2,ICE2
SE_02_051800070 chr15:67064793-67184574 119781 70 40 3295 274 49 451 953 SMAD3
SE_02_051800174 chr15:68256203-68314045 57842 174 21 1427 118 2 202 2070 ITGA11,FEM1B,CLN6
SE_02_051800142 chr15:68813048-68822216 9168 142 2 224 1 0 116 138 ANP32A,MIR4312,ANP32A-IT1
SE_02_051800138 chr15:72220252-72238378 18126 138 6 420 37 1 58 463 PKM,GRAMD2,PARP6
SE_02_051800044 chr15:90155244-90232364 77120 44 25 2544 323 3 270 2357 CIB1,SEMA4B,NGRN,TTLL13P,GDPGP1
SE_02_051800118 chr15:92797359-92845465 48106 118 12 1478 47 0 52 0 LINC01578,ASB9P1
SE_02_051800176 chr15:98646669-98652783 6114 176 1 175 6 1 131 126 IGF1R,IRAIN
SE_02_051800060 chr15:98841477-98921234 79757 60 38 2586 55 5 358 814 IGF1R,MIR4714
SE_02_051800102 chr16:57600757-57654620 53863 102 17 1768 144 6 157 1068 ADGRG1,DRC7,ADGRG3
SE_02_051800172 chr16:68635805-68686160 50355 172 20 1362 129 2 184 1140 CDH3
SE_02_051800129 chr16:69016858-69123339 106481 129 46 2502 182 7 358 2447 CHTF8,HAS3,TANGO6,CIRH1A
SE_02_051800028 chr16:70674659-70768706 94047 28 30 2956 283 1 472 3224 VAC14,VAC14-AS1,MTSS1L
SE_02_051800154 chr16:82626771-82638516 11745 154 3 505 14 7 68 110 CDH13
SE_02_051800023 chr16:87781077-87871718 90641 23 40 3941 241 2 105 1834 MIR6775,SLC7A5,KLHDC4,LOC102724467
SE_02_051800033 chr17:17681098-17755610 74512 33 44 1980 132 1 316 331 RAI1,SMCR2,SMCR5,RAI1-AS1
SE_02_051800167 chr17:17911213-17960708 49495 167 21 1199 128 2 156 0 TOM1L2,LRRC48
SE_02_051800191 chr17:40303346-40350127 46781 191 13 1041 58 0 665 1225 RARA-AS1,RARA,CDC6,GJD3
SE_02_051800068 chr17:40471277-40549349 78072 68 28 2285 118 9 245 1748 TNS4,CCR7,IGFBP4
SE_02_051800019 chr17:41617521-41679208 61687 19 19 1871 157 1 233 2299 KRT17,KRT42P,GAST,EIF1,KRT16,KRT9,KRT14
SE_02_051800128 chr17:41770111-41801717 31606 128 18 873 87 2 171 421 JUP,FKBP10,HAP1,P3H4,NT5C3B,KLHL10
SE_02_051800010 chr17:43231367-43316000 84633 10 23 295 46 0 8 359 RNU2-1,TMEM106A,LINC00854
SE_02_051800144 chr17:43394304-43471327 77023 144 21 2036 202 2 181 504 ARL4D,MIR2117,DHX8,LINC00910
SE_02_051800107 chr17:50026205-50067467 41262 107 15 1191 78 7 204 1094 ITGA3,LOC284080,PDK2,DLX3
SE_02_051800025 chr17:59747131-59803471 56340 25 32 1189 119 5 85 71 VMP1,PTRH2,MIR21
SE_02_051800047 chr17:59825548-59854132 28584 47 11 628 55 1 113 260 MIR21,VMP1,RPS6KB1,TUBD1
SE_02_051800166 chr17:74748580-74774318 25738 166 14 780 44 4 140 1522 NAT9,SLC9A3R1,MIR3615,RAB37,TMEM104,CD300LF
SE_02_051800184 chr17:75675286-75707882 32596 184 16 876 42 6 91 1081 SAP30BP,SMIM5,ITGB4,SMIM6,RECQL5
SE_02_051800048 chr17:77380521-77495014 114493 48 41 3885 203 1 296 2426 SEPT9,MIR4316
SE_02_051800096 chr17:81386447-81424417 37970 96 8 1357 86 2 410 274 BAHCC1,MIR4740,LOC100130370,MIR3186
SE_02_051800004 chr18:3245916-3249846 3930 4 1 128 16 1 21 171 MYL12A,MYL12B,LOC104968399,MYOM1
SE_02_051800061 chr18:3296331-3297584 1253 61 1 38 2 0 0 0 MYL12B,MYL12A,LOC104968399
SE_02_051800002 chr18:3446461-3455191 8730 2 1 252 8 1 152 657 TGIF1,GAPLINC
SE_02_051800125 chr18:3508448-3515374 6926 125 6 189 2 1 6 43 DLGAP1,GAPLINC
SE_02_051800001 chr18:3581106-3631732 50626 1 21 1391 73 5 103 867 DLGAP1,DLGAP1-AS2,DLGAP1-AS1
SE_02_051800005 chr18:3649231-3680511 31280 5 8 930 42 5 48 26 DLGAP1,DLGAP1-AS2
SE_02_051800040 chr18:9575845-9689341 113496 40 27 3127 295 10 47 550 PPP4R1-AS1,PPP4R1,RAB31
SE_02_051800158 chr19:12781638-12791342 9704 158 1 230 12 0 154 8 MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,JUNB,C19ORF43,MAST1
SE_02_051800156 chr19:13131407-13182350 50943 156 15 1358 66 4 182 2674 NACC1,IER2,STX10,LYL1,TRMT1
SE_02_051800036 chr19:38635984-38740540 104556 36 70 3203 366 8 509 4045 EIF3K,CAPN12,ACTN4,MAP4K1,LGALS7B,LGALS7
SE_02_051800108 chr19:42243264-42283815 40551 108 9 950 62 1 829 1217 CIC,ERF,DEDD2,GSK3A,ZNF526,PRR19,PAFAH1B3,MEGF8,TMEM145
SE_02_051800193 chr19:47093727-47132936 39209 193 11 1128 30 1 184 647 SAE1,ZC3H4,TMEM160
SE_02_051800115 chr2:105370269-105429236 58967 115 23 1738 119 2 123 850 FHL2,TGFBRAP1,C2ORF49
SE_02_051800153 chr2:120896225-120953070 56845 153 18 1819 82 15 132 251 GLI2
SE_02_051800077 chr2:121472587-121533303 60716 77 25 1676 115 2 68 501 RNU4ATAC,CLASP1
SE_02_051800145 chr2:128260490-128322973 62483 145 17 1996 145 6 154 1006 HS6ST1
SE_02_051800074 chr2:130797376-130847853 50477 74 14 1542 95 2 21 918 AMER3,GPR148
SE_02_051800187 chr2:173962083-173966813 4730 187 2 135 4 0 69 595 SP3
SE_02_051800180 chr2:176097221-176108702 11481 180 2 309 22 0 117 667 HOXD12,HOXD11,HOXD8,HOXD13,HOXD4,EVX2,HOXD9,HOXD-AS2,HOXD10,MIR10B
SE_02_051800024 chr2:177229361-177283007 53646 24 18 1357 94 1 156 878 NFE2L2,MIR3128,MIR4444-1,MIR6512,HNRNPA3
SE_02_051800031 chr2:20106803-20237123 130320 31 44 4118 347 21 436 1265 SDC1
SE_02_051800049 chr2:236679551-236779800 100249 49 39 3465 62 2 270 0 ACKR3
SE_02_051800162 chr2:240426665-240453641 26976 162 11 1027 80 0 0 697 PP14571,GPC1,MIR149
SE_02_051800110 chr2:28376381-28415463 39082 110 14 1064 55 5 134 1812 FOSL2,FLJ31356
SE_02_051800178 chr2:43217645-43229396 11751 178 6 396 17 0 202 1185 LINC01126,ZFP36L2
SE_02_051800066 chr2:70061424-70109602 48178 66 11 1362 114 1 167 800 PCBP1-AS1,PCBP1,LOC100133985
SE_02_051800094 chr2:84945082-85019263 74181 94 26 1964 65 1 33 257 KCMF1,TMSB10
SE_02_051800186 chr2:85537246-85547127 9881 186 2 307 37 0 178 1240 PARTICL,MAT2A,GGCX,VAMP8,RNF181,VAMP5
SE_02_051800075 chr2:96854537-96889225 34688 75 9 968 60 2 257 2414 SEMA4C,FAM178B,ANKRD39,LOC101927053,ANKRD23,CNNM3
SE_02_051800135 chr20:10635332-10675772 40440 135 17 1083 50 12 673 2140 JAG1,MIR6870
SE_02_051800095 chr20:31601916-31612979 11063 95 1 430 41 3 130 400 MIR3193,ID1,COX4I2,HM13-AS1
SE_02_051800088 chr20:37292792-37363498 70706 88 24 2048 146 1 131 728 MANBAL,SRC,GHRH
SE_02_051800122 chr20:62349838-62381959 32121 122 14 1268 120 1 165 779 LAMA5,LAMA5-AS1,CABLES2,RBBP8NL,RPS21,MIR4758,ADRM1
SE_02_051800101 chr22:36323702-36419765 96063 101 40 2805 227 8 294 994 MYH9,MIR6819
SE_02_051800198 chr22:37880257-37913813 33556 198 13 853 95 2 72 579 EIF3L,MICALL1,MIR5096,MIR658,MIR659,C22ORF23,ANKRD54,POLR2F
SE_02_051800042 chr22:46050009-46082199 32190 42 9 905 50 5 248 1026 PRR34,PRR34-AS1,MIR3619,LINC00899,LOC730668,MIRLET7BHG,MIRLET7A3,MIR4763,MIRLET7B
SE_02_051800039 chr22:46429082-46597414 168332 39 68 6332 547 17 325 1362 CELSR1,GRAMD4
SE_02_051800071 chr3:151284097-151327427 43330 71 13 1201 142 4 76 379 P2RY13,MED12L,GPR87,P2RY14,P2RY12
SE_02_051800181 chr3:153158919-153164481 5562 181 1 148 2 0 57 436 RAP2B
SE_02_051800117 chr3:159761131-159791675 30544 117 8 808 52 2 196 375 IQCJ-SCHIP1,SCHIP1,IQCJ-SCHIP1-AS1
SE_02_051800083 chr3:177170119-177199327 29208 83 12 899 46 1 36 287 TBL1XR1
SE_02_051800126 chr3:177443373-177484535 41162 126 15 1257 40 10 124 0 LINC00578
SE_02_051800099 chr3:177588813-177604529 15716 99 6 401 16 3 20 0 LINC00578
SE_02_051800169 chr3:183252709-183302795 50086 169 19 1314 23 1 39 1560 MCF2L2,B3GNT5
SE_02_051800009 chr3:189787402-189950390 162988 9 66 4542 90 22 607 1199 TP63,MIR944
SE_02_051800165 chr3:196259095-196288859 29764 165 17 736 79 0 43 183 PCYT1A,TM4SF19,ZDHHC19,TCTEX1D2,TM4SF19-AS1,SLC51A
SE_02_051800141 chr4:186722469-186736938 14469 141 3 383 31 0 63 314 FAT1
SE_02_051800182 chr5:133222079-133249943 27864 182 14 910 27 3 134 379 FSTL4,HSPA4
SE_02_051800017 chr5:134437840-134593119 155279 17 44 4037 321 23 768 3474 JADE2,LOC101927934,CDKN2AIPNL,LOC102546229,SAR1B
SE_02_051800159 chr5:135992921-136062214 69293 159 29 2001 112 31 264 1364 TGFBI,VTRNA2-1,LECT2
SE_02_051800105 chr5:150458713-150527009 68296 105 33 1952 135 2 239 489 NDST1,LOC102546298,CD74,RPS14
SE_02_051800012 chr5:151559385-151652685 93300 12 42 2767 212 5 255 763 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_02_051800078 chr6:10398738-10427121 28383 78 10 719 20 1 338 1395 TFAP2A,TFAP2A-AS1,MIR5689,LINC00518
SE_02_051800185 chr6:42780683-42784627 3944 185 1 73 6 0 18 93 TBCC,GLTSCR1L
SE_02_051800069 chr6:43079634-43129852 50218 69 22 1284 109 2 124 184 PTK7,KLC4,SRF,CUL7,MRPL2
SE_02_051800123 chr6:53567394-53623674 56280 123 14 1553 109 2 30 215 LOC101927136,KLHL31,GCLC,LINC01564
SE_02_051800097 chr7:129824322-129917335 93013 97 50 2339 225 1 131 837 UBE2H,MIR96,MIR183
SE_02_051800098 chr7:1506817-1568407 61590 98 18 2520 231 2 129 4491 TMEM184A,MAFK,PSMG3,MICALL2,TFAMP1,PSMG3-AS1,INTS1
SE_02_051800051 chr7:471776-543536 71760 51 17 3009 196 0 237 2619 HRAT92,PDGFA,LOC101927000
SE_02_051800046 chr7:47471031-47606789 135758 46 68 4067 155 9 239 378 TNS3,LINC01447,C7ORF65
SE_02_051800021 chr7:5394955-5430897 35942 21 7 1221 22 0 281 1044 TNRC18
SE_02_051800026 chr7:55020915-55159049 138134 26 59 4044 187 23 369 730 EGFR,EGFR-AS1
SE_02_051800106 chr8:100944449-100954609 10160 106 3 302 23 1 72 706 YWHAZ
SE_02_051800018 chr8:101061901-101160316 98415 18 36 2734 60 13 168 291 FLJ42969,ZNF706
SE_02_051800121 chr8:101491253-101539560 48307 121 12 1283 13 2 106 116 GRHL2
SE_02_051800132 chr8:102788087-102811439 23352 132 3 579 50 0 94 670 AZIN1
SE_02_051800035 chr8:127787866-127881043 93177 35 37 2698 74 9 110 300 MIR1204,PVT1
SE_02_051800067 chr8:129971126-130077235 106109 67 25 3020 183 17 227 791 MIR5194,FAM49B,ASAP1,ASAP1-IT2
SE_02_051800113 chr8:22092824-22137844 45020 113 18 1562 134 2 524 5593 NUDT18,FAM160B2,HR,DMTN,BMP1,SFTPC,REEP4,LGI3
SE_02_051800120 chr9:127519376-127584851 65475 120 25 1891 230 7 212 709 FAM129B,STXBP1
SE_02_051800164 chr9:128683014-128709445 26431 164 4 687 28 1 169 1673 SET,PKN3,ZDHHC12,WDR34,LOC100506100
SE_02_051800054 chr9:128884564-128943490 58926 54 25 1621 139 3 217 2100 LRRC8A,PHYHD1,CCBL1,NUP188,DOLK
SE_02_051800150 chr9:129166332-129178273 11941 150 3 301 25 0 192 653 IER5L
SE_02_051800014 chr9:129458228-129507408 49180 14 23 1454 87 0 143 874 LINC00963
SE_02_051800072 chr9:129550348-129611493 61145 72 12 1849 130 7 76 576 NTMT1,C9ORF50,ASB6
SE_02_051800116 chr9:132002431-132076813 74382 116 18 1892 73 5 421 140 MED27
SE_02_051800043 chr9:133818668-133905089 86421 43 23 3206 147 6 92 174 VAV2,SARDH
SE_02_051800008 chr9:134323619-134456799 133180 8 49 4808 153 18 444 5060 RXRA,MIR4669
SE_02_051800177 chr9:136050338-136113272 62934 177 15 2209 149 3 228 278 NACC2,C9ORF69
SE_02_051800197 chr9:137295237-137317198 21961 197 4 586 24 1 208 1022 NRARP,EXD3,FAM166A,NELFB,TOR4A,C9ORF173-AS1,C9ORF173
SE_02_051800170 chr9:21546341-21592660 46319 170 22 1325 23 8 123 166 MIR31HG,MIR31
SE_02_051800058 chr9:92706176-92782670 76494 58 24 2119 207 7 287 1561 BICD2,IPPK,ANKRD19P
SE_02_051800082 chr9:94757067-94822967 65900 82 21 1621 167 9 222 446 C9ORF3,MIR2278
SE_02_051800011 chr9:94843381-94955689 112308 11 49 2876 178 4 270 493 C9ORF3,MIR2278
SE_02_051800194 chr9:95003594-95008808 5214 194 1 121 6 0 11 289 C9ORF3,MIR6081

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM2842768
Input ID: Name:GSM2842769
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb