SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000207689
Gene: MIR548A2 Gene type: miRNA
Strand: + External links:
Genomic region: chr6:135239160-135239256 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_000400032 chr3:64666213-64816367 Sample_02_0004 Mammary gland MCF-7_10Gygamma_7.5h 32 39 4419 156 23 425 611 MIR548A2,ADAMTS9
SE_02_000300025 chr3:64693806-64814170 Sample_02_0003 Mammary gland MCF-7_10Gygamma_5h 25 31 3632 129 21 266 145 MIR548A2,ADAMTS9
SE_01_008600834 chr3:64710622-64767385 Sample_01_0086 Thoracic aorta thoracic-aorta 834 8 1679 56 14 178 28 MIR548A2,ADAMTS9
SE_02_000300107 chr3:64828916-64860147 Sample_02_0003 Mammary gland MCF-7_10Gygamma_5h 107 10 954 12 2 149 0 MIR548A2
SE_00_000300649 chr3:64864215-64909323 Sample_00_0003 Adrenal gland adrenal-gland_97d 649 8 1296 11 2 191 53 MIR548A2,ADAMTS9
SE_00_002500171 chr3:64867138-64959392 Sample_00_0025 Muscle of leg muscle-of-leg 171 12 2908 120 10 394 88 MIR548A2,ADAMTS9
SE_00_002600112 chr3:64870700-64959026 Sample_00_0026 Muscle of trunk muscle-of-trunk 112 13 2795 119 10 388 43 MIR548A2,ADAMTS9
SE_02_000300037 chr3:64873234-64964956 Sample_02_0003 Mammary gland MCF-7_10Gygamma_5h 37 31 2931 120 10 376 43 MIR548A2
SE_02_000400117 chr3:64889032-64964982 Sample_02_0004 Mammary gland MCF-7_10Gygamma_7.5h 117 25 2470 115 10 336 43 MIR548A2,ADAMTS9
SE_02_040000101 chr3:64974597-65009460 Sample_02_0400 Mammary gland SUM159PT-MCF-7 101 3 1286 73 1 112 50 MIR548A2
SE_02_028000170 chr3:64975191-65008626 Sample_02_0280 Mammary gland SUM159_DMSO_24h 170 5 1238 71 1 108 0 MIR548A2
SE_02_039900262 chr3:64976074-65009197 Sample_02_0399 Mammary gland SUM159PT-BT-474 262 4 1228 69 1 110 50 MIR548A2
SE_02_013900147 chr3:64990195-65037993 Sample_02_0139 Liver RT236 147 6 1718 77 6 188 178 MIR548A2
SE_02_031600665 chr3:65079987-65096581 Sample_02_0316 Neuroblastoma CHP212 665 2 531 3 2 88 0 MIR548A2
SE_02_029800017 chr3:65157190-65249376 Sample_02_0298 Neuroblastoma CLB-GA 17 12 2973 25 12 299 0 MIR548A2
SE_02_030600206 chr3:65198840-65247575 Sample_02_0306 Autonomic ganglia SH-SY5Y 206 4 1637 7 6 151 0 MIR548A2
SE_02_031100415 chr3:65200372-65247567 Sample_02_0311 Neuroblastoma SK-N-AS 415 4 1581 7 6 147 0 MIR548A2
SE_02_007600460 chr3:65226303-65246459 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 460 2 678 0 5 80 0 MIR548A2
SE_01_008801105 chr3:65314833-65355929 Sample_01_0088 Tibial nerve tibial-nerve 1105 4 1329 11 2 119 166 MAGI1,MIR548A2
SE_02_018500757 chr3:65329349-65341338 Sample_02_0185 Skin UACC257 757 3 397 2 2 37 0 MIR548A2
SE_02_133200008 chr6:135145266-135337754 Sample_02_1332 Blood Monomac6_CTRL 8 51 5003 322 47 554 1606 AHI1,MYB,MIR548A2
SE_04_000100016 chr6:135162660-135359830 Sample_04_0001 Blood heat shocked K562 16 33 5044 306 44 534 1631 AHI1,MYB,MIR548A2
SE_02_109800002 chr6:135166443-135331717 Sample_02_1098 Blood THP1_DMSO_noPMA 2 64 4177 264 41 481 1606 AHI1,MYB,MIR548A2
SE_02_122900005 chr6:135174051-135391620 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 5 117 5628 314 35 540 1673 AHI1,MYB,MIR548A2
SE_02_057600157 chr6:135174234-135264015 Sample_02_0576 Blood HEL_sgLKB1e2 157 29 2197 132 27 312 1151 MYB,MIR548A2
SE_02_058000177 chr6:135174282-135263563 Sample_02_0580 Blood HEL_sgSIK3e4 177 22 2181 132 27 312 1151 MYB,MIR548A2
SE_02_111900007 chr6:135176070-135347298 Sample_02_1119 Blood KBM7 7 82 4295 257 31 483 1606 AHI1,MYB,MIR548A2
SE_02_087500087 chr6:135176448-135326994 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 87 55 3751 232 31 461 1606 AHI1,MYB,MIR548A2
SE_02_149200451 chr6:135176535-135245759 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 451 26 1637 102 26 277 1151 MYB,MIR548A2
SE_02_134500056 chr6:135176709-135253177 Sample_02_1345 Leukophereses leukophereses_p358 56 29 1816 105 25 308 1151 MYB,MIR548A2
SE_02_099300028 chr6:135176713-135250218 Sample_02_0993 Blood MOLM-13_empty 28 40 1747 103 25 277 1151 MYB,MIR548A2
SE_02_099500018 chr6:135176781-135258561 Sample_02_0995 Blood MOLM-13_empty vector 18 42 1949 115 25 312 1151 MYB,MIR548A2
SE_02_133100008 chr6:135176805-135347140 Sample_02_1331 Blood Molm13_CTRL 8 56 4276 255 30 483 1606 AHI1,MYB,MIR548A2
SE_02_057900132 chr6:135178707-135291786 Sample_02_0579 Blood HEL_sgNeg2 132 42 2804 167 26 405 1393 AHI1,MYB,MIR548A2
SE_02_083500073 chr6:135179814-135291787 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 73 34 2784 165 26 405 1393 AHI1,MYB,MIR548A2
SE_02_047800081 chr6:135204731-135273060 Sample_02_0478 Colon normal colon mucosa 81 19 1796 113 13 145 128 MYB,MIR548A2
SE_02_125300461 chr6:135205738-135276155 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 461 18 1866 117 12 151 128 MYB,MIR548A2
SE_02_138600047 chr6:135207796-135236046 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 47 8 715 51 9 62 128 MYB,MIR548A2
SE_02_107500062 chr6:135211136-135257820 Sample_02_1075 Lymphoma BC-3 62 11 1166 68 7 99 128 MYB,MIR548A2
SE_02_047700054 chr6:135211177-135275696 Sample_02_0477 Colon intestinal epithelial organoids_139a 54 24 1709 103 8 144 128 MYB,MIR548A2
SE_02_107400067 chr6:135213701-135257668 Sample_02_1074 Lymphoma BC-1 67 12 1103 64 7 88 128 MYB,MIR548A2
SE_02_084100128 chr6:135228196-135328332 Sample_02_0841 Blood THP-1_untr 128 24 2602 155 5 198 455 AHI1,MIR548A2,MYB
SE_02_147400321 chr6:135230476-135259624 Sample_02_1474 Bone CHLA-10 321 10 741 34 0 49 0 MIR548A2,MYB
SE_02_083300183 chr6:135230521-135328543 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 183 28 2547 152 5 198 455 AHI1,MIR548A2,MYB
SE_02_148001021 chr6:135230821-135257464 Sample_02_1480 Bone MHH-ES-1 1021 12 670 31 0 49 0 MIR548A2,MYB
SE_02_083600728 chr6:135230878-135288131 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 728 17 1540 86 2 146 188 AHI1,MIR548A2,MYB
SE_02_146000358 chr6:135230890-135286622 Sample_02_1460 Blood Mutz-3 358 15 1507 85 2 137 179 AHI1,MIR548A2,MYB
SE_02_148900126 chr6:135234062-135281415 Sample_02_1489 Bone TC-106 126 20 1312 72 2 112 0 MIR548A2
SE_02_069200007 chr6:135234083-135254629 Sample_02_0692 Lung NCI-H526_no infection 7 5 510 23 0 39 0 MIR548A2
SE_02_128900007 chr6:135234116-135254038 Sample_02_1289 Lung NCI-H526_p8-15 7 4 490 19 0 39 0 MIR548A2
SE_00_005601078 chr6:135244417-135272413 Sample_00_0056 Sigmoid colon sigmoid colon 3y 1078 18 794 47 1 75 0 MIR548A2,MYB
SE_02_068500437 chr6:135244441-135253772 Sample_02_0685 Lung NCI-H1048_no infection 437 3 225 6 0 32 0 MIR548A2
SE_02_069700582 chr6:135244456-135253380 Sample_02_0697 Lung NCI-H1048-cas9_sgHROSA 582 5 220 6 0 32 0 MIR548A2,MYB
SE_02_108400126 chr6:135246101-135257648 Sample_02_1084 Blood KBM7-derived near haploid cells 126 6 292 13 0 35 0 MIR548A2
SE_02_075600924 chr6:135248020-135272985 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 924 6 715 44 1 74 0 MIR548A2
SE_02_083400656 chr6:135248060-135288330 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 656 12 1111 67 2 132 188 AHI1,MIR548A2
SE_02_045900135 chr6:135248076-135331639 Sample_02_0459 Blood ME-1_DMSO_6h 135 24 2194 137 5 187 455 AHI1,MIR548A2
SE_02_046000080 chr6:135248535-135327086 Sample_02_0460 Blood ME-1_I-10-49_6h 80 16 2048 128 5 184 455 AHI1,MIR548A2
SE_02_143100848 chr6:135249104-135332974 Sample_02_1431 Blood T cell 848 15 2200 140 5 189 455 AHI1,MIR548A2
SE_02_052200238 chr6:135249609-135272425 Sample_02_0522 Colon SW620 238 4 660 43 1 74 0 MIR548A2,MYB
SE_02_062200024 chr6:135249987-135326258 Sample_02_0622 Blood EOL1_Naive 24 36 1995 126 5 184 455 AHI1,MIR548A2,MYB,HBS1L
SE_01_009900863 chr6:135250019-135272766 Sample_01_0099 Colon transverse colon 863 11 660 43 1 74 0 MIR548A2,MYB
SE_02_129200156 chr6:135250727-135272447 Sample_02_1292 Lung JHU-LX110-SCLC PDX 156 8 627 43 1 72 0 MIR548A2,MYB
SE_02_109700126 chr6:135258067-135308621 Sample_02_1097 Haematopoietic and lymphoid tissue 697 126 30 1347 85 3 104 351 AHI1,MIR548A2
SE_02_109900213 chr6:135258125-135328346 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 213 36 1849 117 5 149 455 AHI1,MIR548A2,MYB
SE_02_050200289 chr6:135258157-135292566 Sample_02_0502 Blood HL-60_PMA_16h 289 16 941 58 2 97 242 AHI1,MIR548A2
SE_02_149200321 chr6:135260098-135326850 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 321 15 1745 114 5 149 455 AHI1,MIR548A2
SE_02_134600194 chr6:135262702-135291387 Sample_02_1346 Leukophereses leukophereses_p400 194 12 773 48 2 97 242 AHI1,MIR548A2
SE_02_088500235 chr6:135263382-135289561 Sample_02_0885 Blood NALM6_2 235 8 718 45 2 97 188 AHI1,MIR548A2
SE_02_073900463 chr6:135264604-135288964 Sample_02_0739 Blood Nalm6 463 6 674 42 2 95 188 AHI1,MIR548A2,MYB
SE_02_057300647 chr6:135265343-135288482 Sample_02_0573 Blood Nalm6_1 647 6 630 38 2 93 188 AHI1,MIR548A2,MYB
SE_02_075800429 chr6:135265434-135288504 Sample_02_0758 Peripheral blood REH 429 8 627 38 2 93 188 AHI1,MIR548A2
SE_02_158500201 chr6:135265565-135290620 Sample_02_1585 Blood SupB15 DMSO 201 13 661 38 2 93 231 AHI1,MIR548A2
SE_02_105100542 chr6:135265581-135273005 Sample_02_1051 Esophagus Eso26 542 2 220 14 1 35 0 MIR548A2,MYB
SE_02_158600141 chr6:135265619-135290632 Sample_02_1586 Blood SupB15 ACY1035 141 13 659 38 2 93 235 AHI1,MIR548A2
SE_02_106900366 chr6:135265851-135290752 Sample_02_1069 Bone marrow Bone marrow aspirate 366 11 658 38 2 93 242 AHI1,MIR548A2,MYB
SE_02_134500123 chr6:135266708-135327242 Sample_02_1345 Leukophereses leukophereses_p358 123 20 1546 96 5 143 455 AHI1,MIR548A2
SE_02_075501223 chr6:135268457-135275925 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1223 4 224 13 2 23 0 MIR548A2,MYB
SE_02_156701185 chr6:135269363-135272559 Sample_02_1567 iPSCs CiPSC 1185 1 104 6 1 15 0 MIR548A2,MYB
SE_02_099500033 chr6:135271285-135327157 Sample_02_0995 Blood MOLM-13_empty vector 33 34 1406 87 4 114 455 AHI1,MIR548A2
SE_02_099400032 chr6:135273572-135327002 Sample_02_0994 Blood MOLM13_SIK3TQ 32 25 1330 84 4 110 455 AHI1,MIR548A2
SE_02_134100163 chr6:135274371-135326551 Sample_02_1341 Blood MV411 163 18 1290 83 4 110 455 AHI1,MIR548A2
SE_02_057400109 chr6:135274514-135345703 Sample_02_0574 Blood MOLM-13_sgNeg2 109 28 1799 107 4 125 455 AHI1,MIR548A2
SE_02_054800132 chr6:135274536-135289562 Sample_02_0548 Blood THP-1_24h with EtOH 132 3 372 23 1 58 188 AHI1,MIR548A2
SE_02_057500087 chr6:135274545-135326748 Sample_02_0575 Blood MOLM13_sgLKB1e2 87 21 1291 82 4 110 455 AHI1,MIR548A2
SE_02_057700047 chr6:135274546-135326797 Sample_02_0577 Blood MOLM13_empty 47 18 1291 83 4 110 455 AHI1,MIR548A2
SE_02_058100080 chr6:135274633-135326668 Sample_02_0581 Blood MOLM13_empty_HG 80 20 1289 82 4 110 455 AHI1,MIR548A2
SE_02_058200053 chr6:135274649-135326717 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 53 16 1289 82 4 110 455 AHI1,MIR548A2
SE_02_057800083 chr6:135274698-135326972 Sample_02_0578 Blood MOLM-13_sgSIK3e4 83 25 1290 83 4 110 455 AHI1,MIR548A2
SE_02_099300053 chr6:135274821-135326772 Sample_02_0993 Blood MOLM-13_empty 53 28 1286 82 4 107 455 AHI1,MIR548A2
SE_02_113000121 chr6:135275623-135328388 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 121 24 1313 83 4 104 455 AHI1,MIR548A2
SE_02_054500073 chr6:135278062-135328676 Sample_02_0545 Bone marrow K562 WT 73 21 1244 80 3 103 455 AHI1,MIR548A2
SE_02_092600170 chr6:135278147-135308159 Sample_02_0926 Blood NB4_1 170 20 722 44 1 58 351 AHI1,MIR548A2
SE_02_103300155 chr6:135278189-135329090 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 155 13 1254 81 3 101 455 AHI1,MIR548A2
SE_02_134200104 chr6:135278393-135326502 Sample_02_1342 Blood NB4 104 26 1181 75 3 101 455 AHI1,MIR548A2
SE_02_133000736 chr6:135278464-135326632 Sample_02_1330 Blood AMU-AML1 736 11 1186 75 3 101 455 AHI1,MIR548A2
SE_02_050100178 chr6:135278733-135288072 Sample_02_0501 Blood HL-60_CTRL 178 5 236 14 0 49 188 AHI1,MIR548A2
SE_02_046300546 chr6:135279279-135283852 Sample_02_0463 Blood OCI-AML3 cells 546 3 133 7 0 34 1 MIR548A2
SE_02_134700261 chr6:135279377-135288394 Sample_02_1347 Leukophereses leukophereses_p401 261 4 214 11 0 49 188 AHI1,MIR548A2
SE_02_046100743 chr6:135279490-135288287 Sample_02_0461 Blood MV-4-11-B cells 743 3 211 11 0 49 188 AHI1,MIR548A2,MYB
SE_02_134900476 chr6:135279714-135289212 Sample_02_1349 Leukophereses leukophereses_p411 476 2 223 12 0 49 188 AHI1,MIR548A2
SE_02_133900064 chr6:135279796-135287827 Sample_02_1339 Bone marrow ficolled whole bone marrow 64 2 192 11 0 49 188 AHI1,MIR548A2
SE_02_046400088 chr6:135279809-135287581 Sample_02_0464 Bone marrow MOLM-13 88 10 185 11 0 48 188 AHI1,MIR548A2
SE_04_000200166 chr6:135280302-135359743 Sample_04_0002 Blood cold shocked K562 166 15 2030 113 3 145 480 AHI1,MIR548A2
SE_02_098700275 chr6:135291323-135327447 Sample_02_0987 Blood K562_Control_1 275 14 910 60 3 52 213 AHI1,MIR548A2
SE_02_111600424 chr6:135298386-135328282 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 424 11 750 52 3 52 213 AHI1,MIR548A2
SE_02_054600194 chr6:135299399-135326744 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 194 10 685 47 3 52 213 AHI1,MIR548A2
SE_02_098800762 chr6:135305589-135326885 Sample_02_0988 Blood K562_EPZ 762 8 532 36 2 49 104 AHI1,MIR548A2
SE_02_054700051 chr6:135305796-135326965 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 51 6 530 36 2 49 104 AHI1,MIR548A2
SE_02_046400119 chr6:135306060-135326233 Sample_02_0464 Bone marrow MOLM-13 119 8 512 35 2 49 104 AHI1,MIR548A2
SE_02_082100278 chr6:135306119-135327340 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 278 2 541 36 2 49 104 AHI1,MIR548A2,MYB
SE_02_057600571 chr6:135310915-135328818 Sample_02_0576 Blood HEL_sgLKB1e2 571 7 462 33 2 40 104 AHI1,MIR548A2
SE_02_058000602 chr6:135313636-135333110 Sample_02_0580 Blood HEL_sgSIK3e4 602 6 495 33 2 46 104 AHI1,MIR548A2
SE_02_057900538 chr6:135313688-135333085 Sample_02_0579 Blood HEL_sgNeg2 538 7 494 33 2 44 104 AHI1,MIR548A2
SE_02_130100244 chr6:135313947-135350454 Sample_02_1301 Blood PER-117 244 18 937 48 2 62 104 AHI1,MIR548A2
SE_02_082300044 chr6:135318162-135328086 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 44 1 236 20 2 36 104 AHI1,MIR548A2
SE_02_117000133 chr6:135318281-135327205 Sample_02_1170 Blood HEL92.1.7 133 7 214 18 2 36 98 AHI1,MIR548A2
SE_02_111200360 chr6:135318342-135329388 Sample_02_1112 T lymphocyte THP-6 T-ALL 360 3 268 24 2 36 87 AHI1,MIR548A2
SE_02_082200061 chr6:135319057-135328277 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 61 1 216 19 1 25 52 AHI1,MIR548A2
SE_02_142300397 chr6:135319140-135327474 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 397 7 202 17 1 25 52 AHI1,MIR548A2
SE_02_142200303 chr6:135319191-135327886 Sample_02_1422 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_0h 303 5 203 19 1 25 52 AHI1,MIR548A2
SE_02_121700292 chr6:135319378-135329221 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 292 4 234 23 1 25 52 AHI1,MIR548A2
SE_02_121500333 chr6:135319615-135329289 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 333 4 234 23 1 25 52 AHI1,MIR548A2
SE_02_082000280 chr6:135319755-135327674 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 280 2 185 17 1 25 52 AHI1,MIR548A2
SE_02_121400284 chr6:135319790-135329178 Sample_02_1214 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1 284 4 226 23 1 25 52 AHI1,MIR548A2
SE_02_143800973 chr6:135321762-135361758 Sample_02_1438 Liver LSEC 973 9 1047 53 1 66 77 AHI1,MIR548A2
SE_02_156800528 chr6:135322600-135360687 Sample_02_1568 Heart Cardiac progenitor cells 528 5 1001 52 1 66 77 AHI1,MIR548A2
SE_02_143701121 chr6:135322657-135361347 Sample_02_1437 Liver LSEC-TNF 1121 10 1017 52 1 66 77 AHI1,MIR548A2
SE_02_143601064 chr6:135344651-135362497 Sample_02_1436 Liver LSEC-Ctrl 1064 5 473 21 0 30 25 AHI1,MIR548A2
SE_02_145201239 chr6:135357499-135359916 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 1239 1 68 4 0 3 25 AHI1,MIR548A2
Genomic distribution of SEs associated with MIR548A2
Genome Browser

The strength of the tissue affected by the gene

Expression of MIR548A2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)