Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_013900001 chr1:119977790-120073599 95809 1 6 1810 100 1 494 537 NOTCH2
SE_02_013900002 chr1:146146860-146233107 86247 2 4 197 13 0 464 913 NOTCH2NL,NBPF10
SE_02_013900172 chr1:151607874-151655903 48029 172 10 1194 105 1 103 325 SNX27
SE_02_013900023 chr1:151903394-152002275 98881 23 15 2333 357 9 143 662 S100A10,THEM4,THEM5,S100A11
SE_02_013900084 chr1:161528219-161582161 53942 84 9 1314 122 2 83 1013 FCGR2C,FCGR3A,HSPA6,FCGR2A,FCGR3B,HSPA7
SE_02_013900091 chr1:161609861-161663965 54104 91 7 1480 265 0 79 1021 FCGR3B,FCGR2B,RPL31P11,HSPA7,FCRLA,FCGR2C
SE_02_013900232 chr1:171172494-171227923 55429 232 11 1430 291 4 85 741 FMO2,FMO6P,FMO1
SE_02_013900255 chr1:172135395-172148218 12823 255 1 281 11 0 104 628 MIR214,MIR199A2,DNM3,MIR3120
SE_02_013900233 chr1:172177914-172189060 11146 233 1 241 21 0 52 52 DNM3,MIR199A2,MIR3120,MIR214
SE_02_013900006 chr1:172320442-172430706 110264 6 7 2560 201 16 501 941 C1ORF105,DNM3,PIGC
SE_02_013900279 chr1:202541452-202586516 45064 279 10 988 43 1 159 1078 PPP1R12B
SE_02_013900244 chr1:234598513-234619097 20584 244 3 574 39 2 0 780 IRF2BP2,NCRNA00184
SE_02_013900211 chr1:242127374-242148396 21022 211 2 606 60 0 18 0 PLD5,MAP1LC3C
SE_02_013900153 chr1:243235853-243287748 51895 153 7 1254 83 3 87 415 SDCCAG8,CEP170
SE_02_013900220 chr1:26597373-26622997 25624 220 8 562 35 2 2 0 MIR1976,RPS6KA1
SE_02_013900282 chr1:26677195-26724897 47702 282 7 1089 78 2 447 600 ARID1A
SE_02_013900083 chr1:40376115-40409968 33853 83 3 836 58 0 125 213 SMAP2,ZNF643
SE_02_013900059 chr1:44858850-44931652 72802 59 15 1686 185 10 58 389 EIF2B3,PTCH2
SE_02_013900022 chr1:99429628-99505784 76156 22 6 2132 72 6 166 0 PALMD
SE_02_013900207 chr1:99522066-99550765 28699 207 4 727 46 2 77 0 PALMD
SE_02_013900070 chr1:99631947-99708455 76508 70 11 2106 90 2 364 439 MIR548AA1,MIR548D1,PALMD
SE_02_013900188 chr10:110819595-110893803 74208 188 11 1944 131 3 245 1664 PDCD4,LOC282997,RBM20,SHOC2,RPL13AP6,NCRNA00081
SE_02_013900053 chr10:113087245-113145303 58058 53 6 1508 20 6 585 619 TCF7L2
SE_02_013900234 chr10:113492098-113524967 32869 234 4 889 21 3 134 0 HABP2
SE_02_013900037 chr10:119708267-119798835 90568 37 20 2352 143 4 168 478 INPP5F
SE_02_013900118 chr10:129019012-129047308 28296 118 5 823 4 1 430 0 MGMT
SE_02_013900131 chr10:129945408-129972999 27591 131 3 671 3 1 894 525 EBF3
SE_02_013900209 chr10:33004865-33059055 54190 209 12 1604 119 15 90 0 ITGB1
SE_02_013900120 chr10:33104765-33131131 26366 120 3 747 67 5 102 0 ITGB1
SE_02_013900035 chr10:34416711-34459301 42590 35 7 1172 50 1 47 80 PARD3
SE_02_013900199 chr10:34598331-34640481 42150 199 7 1147 44 0 55 0 PARD3
SE_02_013900148 chr10:36777813-36818198 40385 148 7 1155 22 4 25 0 ANKRD30A
SE_02_013900253 chr10:62035989-62058610 22621 253 4 533 22 3 159 221 ARID5B
SE_02_013900136 chr10:6667119-6683998 16879 136 3 514 47 6 34 0 LOC439949
SE_02_013900063 chr10:6707253-6796466 89213 63 18 2590 146 19 168 146 LOC439949
SE_02_013900074 chr10:72769593-72842491 72898 74 13 1739 124 0 102 30 CCDC109A,OIT3
SE_02_013900054 chr10:89245573-89304160 58587 54 8 1485 103 6 32 437 LIPA,IFIT2,IFIT3,CH25H
SE_02_013900186 chr10:89326607-89370424 43817 186 7 1218 181 2 32 449 IFIT3,IFIT1B,IFIT1,IFIT5,IFIT2
SE_02_013900247 chr10:95724035-95763058 39023 247 8 921 126 1 75 403 ENTPD1,TCTN3
SE_02_013900075 chr10:99971917-100011041 39124 75 5 1001 136 0 58 185 DNMBP,NCRNA00093
SE_02_013900191 chr11:104579431-104628348 48917 191 4 1283 43 1 55 0 CASP12
SE_02_013900281 chr11:107768922-107800750 31828 281 6 1015 144 2 24 267 SLC35F2,SLN
SE_02_013900164 chr11:59916781-59943209 26428 164 5 721 11 0 10 46 TCN1
SE_02_013900106 chr11:65470333-65510995 40662 106 10 1160 121 4 50 963 MALAT1,NEAT1,MIR612,SCYL1,LTBP3
SE_02_013900112 chr11:78309546-78373322 63776 112 13 1714 155 5 164 53 GAB2
SE_02_013900245 chr12:102737645-102770883 33238 245 6 876 4 2 130 0 LOC283432,IGF1
SE_02_013900141 chr12:106954476-106995196 40720 141 10 933 89 3 129 1217 C12ORF23,CRY1,MTERFD3
SE_02_013900061 chr12:107056071-107134622 78551 61 15 1954 133 2 148 327 CRY1
SE_02_013900154 chr12:119796803-119837295 40492 154 6 962 66 4 150 450 CIT
SE_02_013900271 chr12:14254385-14262479 8094 271 1 229 10 3 22 0 ATF7IP
SE_02_013900171 chr12:14364754-14419703 54949 171 9 1313 70 10 166 171 ATF7IP
SE_02_013900032 chr12:19174381-19257582 83201 32 14 2236 88 2 97 268 PLEKHA5
SE_02_013900256 chr12:27943449-27976589 33140 256 6 845 15 4 154 522 PTHLH
SE_02_013900010 chr12:43233747-43341160 107413 10 12 2931 104 9 252 0 ADAMTS20
SE_02_013900231 chr12:54255445-54271471 16026 231 1 372 11 0 98 189 CBX5,HNRNPA1P10,NFE2,HNRNPA1
SE_02_013900223 chr12:54328293-54379833 51540 223 8 1208 58 3 548 2071 ZNF385A,MIR148B,GPR84,COPZ1,CBX5,HNRNPA1P10,HNRNPA1,NFE2,ITGA5
SE_02_013900144 chr12:65298822-65331981 33159 144 2 828 31 2 159 162 MSRB3
SE_02_013900122 chr12:65585248-65611715 26467 122 2 673 29 2 120 0 HMGA2
SE_02_013900015 chr12:65821253-65970310 149057 15 22 3591 83 24 660 2507 HMGA2,RPSAP52
SE_02_013900029 chr12:66034810-66123169 88359 29 13 2403 284 6 271 65 LLPH,TMBIM4
SE_02_013900278 chr12:69460793-69480181 19388 278 4 442 32 3 80 156 FRS2
SE_02_013900252 chr12:79373518-79422326 48808 252 6 1092 108 10 171 35 SYT1,MIR1252
SE_02_013900208 chr12:8657682-8701648 43966 208 9 1177 85 0 113 589 RIMKLB,MFAP5,AICDA
SE_02_013900187 chr12:91238616-91279528 40912 187 3 968 49 8 46 0 DCN
SE_02_013900013 chr12:94669290-94784233 114943 13 15 3476 174 19 231 0 TMCC3
SE_02_013900039 chr13:110369495-110425107 55612 39 10 1738 89 16 137 82 COL4A2
SE_02_013900237 chr13:25274370-25307183 32813 237 7 868 40 7 35 330 NUPL1,MTMR6
SE_02_013900051 chr13:33152895-33207012 54117 51 3 1557 91 13 125 215 STARD13
SE_02_013900242 chr13:37104992-37136779 31787 242 4 847 80 1 15 155 CSNK1A1L,FAM48A
SE_02_013900179 chr13:59241863-59282585 40722 179 5 1167 1 6 285 0 DIAPH3
SE_02_013900274 chr13:59345492-59370351 24859 274 1 703 2 2 195 0 DIAPH3
SE_02_013900049 chr13:80334059-80376400 42341 49 6 1077 18 2 264 577 SPRY2
SE_02_013900007 chr13:80838151-80906560 68409 7 3 1739 136 4 149 0 SPRY2
SE_02_013900228 chr14:21520730-21558226 37496 228 7 1129 23 2 213 1209 SALL2,RAB2B,METTL3,TOX4,OR10G3
SE_02_013900072 chr14:22162055-22202117 40062 72 7 1345 206 1 27 200 DAD1
SE_02_013900181 chr14:22299071-22343352 44281 181 6 1365 80 18 71 303 DAD1
SE_02_013900173 chr14:22471609-22494037 22428 173 3 708 39 17 99 916 DAD1
SE_02_013900134 chr14:33472983-33542388 69405 134 12 1997 6 14 415 0 NPAS3,EGLN3
SE_02_013900241 chr14:33558452-33580660 22208 241 1 750 0 4 249 30 NPAS3,EGLN3
SE_02_013900178 chr14:33674791-33713123 38332 178 5 1084 5 12 509 148 NPAS3,EGLN3
SE_02_013900030 chr14:35982504-36071319 88815 30 9 2527 158 8 394 64 BRMS1L
SE_02_013900060 chr14:51905944-51994347 88403 60 11 2559 97 9 52 728 GNG2,C14ORF166
SE_02_013900260 chr14:57827131-57871723 44592 260 3 1289 96 5 111 137 SLC35F4,C14ORF37
SE_02_013900046 chr15:32927595-32996346 68751 46 8 2446 28 1 216 258 FMN1
SE_02_013900219 chr15:48329939-48408709 78770 219 11 2008 185 16 163 560 DUT,FBN1
SE_02_013900097 chr15:48855233-48903738 48505 97 6 1187 81 10 90 556 EID1,SHC4,CEP152
SE_02_013900184 chr15:63189531-63257382 67851 184 14 1721 145 3 210 294 RAB8B,APH1B,RPS27L
SE_02_013900249 chr15:85469278-85505831 36553 249 7 1078 140 6 78 33 AKAP13
SE_02_013900077 chr15:85568487-85628330 59843 77 13 1767 221 10 127 713 AKAP13
SE_02_013900025 chr15:90385413-90430889 45476 25 6 1319 172 3 123 310 IQGAP1,ZNF774,GABARAPL3
SE_02_013900130 chr15:95283349-95307867 24518 130 2 747 16 3 241 81 LOC400456
SE_02_013900108 chr15:95588118-95647864 59746 108 7 1756 31 19 425 0 LOC145820
SE_02_013900020 chr15:96322114-96367261 45147 20 1 1094 5 1 1030 1301 NR2F2,MIR1469
SE_02_013900132 chr15:98850067-98887356 37289 132 5 1180 20 2 163 0 IGF1R,PGPEP1L
SE_02_013900114 chr16:14277520-14326996 49476 114 10 1456 89 6 0 265 MIR193B,MIR365-1
SE_02_013900129 chr16:14443481-14459145 15664 129 1 383 27 0 8 62 PARN,MIR365-1
SE_02_013900043 chr16:52453467-52503743 50276 43 7 1313 31 4 501 104 TOX3
SE_02_013900183 chr16:66352799-66409231 56432 183 7 1600 153 6 180 1699 CDH5,BEAN1
SE_02_013900235 chr16:71607066-71646682 39616 235 10 1095 121 18 87 1202 MARVELD3,PHLPP2,TAT
SE_02_013900215 chr16:76274950-76308067 33117 215 4 1097 26 6 143 163 CNTNAP4
SE_02_013900017 chr16:78237161-78305736 68575 17 5 2646 198 8 431 24 WWOX
SE_02_013900210 chr17:13028604-13066007 37403 210 6 1199 62 0 132 0 ELAC2
SE_02_013900012 chr17:37130895-37242323 111428 12 16 2504 119 4 857 1026 ACACA
SE_02_013900085 chr17:64597775-64662598 64823 85 16 1530 95 5 99 323 SMURF2
SE_02_013900194 chr17:67473713-67535505 61792 194 13 1680 62 6 137 82 PITPNC1
SE_02_013900280 chr17:68695989-68713700 17711 280 3 444 34 3 25 0 FAM20A
SE_02_013900062 chr17:68730997-68804178 73181 62 11 2062 146 5 52 0 FAM20A
SE_02_013900180 chr17:69043260-69070728 27468 180 5 676 33 1 29 234 ABCA9
SE_02_013900068 chr18:26928062-27035054 106992 68 18 2770 270 4 306 479 CHST9,C18ORF16,AQP4
SE_02_013900033 chr18:27134171-27198448 64277 33 7 1640 80 0 200 403 CHST9
SE_02_013900160 chr18:55297890-55356001 58111 160 7 1301 17 2 739 270 TCF4
SE_02_013900034 chr19:30666629-30744830 78201 34 6 2292 35 6 519 0 ZNF536,TSHZ3
SE_02_013900192 chr19:46105903-46141582 35679 192 7 951 61 0 2 262 IGFL3,IGFL2
SE_02_013900067 chr2:152442651-152509982 67331 67 9 1725 143 2 126 0 FMNL2
SE_02_013900229 chr2:172992889-173029430 36541 229 6 988 59 4 200 438 RAPGEF4,ZAK
SE_02_013900246 chr2:178239817-178284395 44578 246 12 1163 82 0 73 0 OSBPL6
SE_02_013900143 chr2:188505780-188530098 24318 143 1 554 15 0 40 41 GULP1,MIR561
SE_02_013900117 chr2:188967877-188989114 21237 117 1 530 13 0 90 293 COL3A1,MIR1245,MIR3606
SE_02_013900099 chr2:189091617-189139941 48324 99 1 1159 112 0 80 252 COL5A2,MIR3129
SE_02_013900189 chr2:189139951-189173098 33147 189 1 790 40 1 39 0 COL5A2,MIR3129
SE_02_013900202 chr2:190431526-190448421 16895 202 1 412 53 0 76 215 MFSD6
SE_02_013900126 chr2:190464306-190511535 47229 126 9 1110 146 0 123 810 MFSD6,TMEM194B
SE_02_013900036 chr2:20032446-20075892 43446 36 6 1173 133 6 83 518 LAPTM4A,WDR35,MATN3
SE_02_013900111 chr2:201110503-201133452 22949 111 3 475 38 2 33 464 CFLAR,CASP10,FAM126B,NDUFB3
SE_02_013900240 chr2:223594171-223615103 20932 240 2 538 4 4 151 330 SCG2
SE_02_013900225 chr2:223685202-223739322 54120 225 9 1508 80 3 78 0 SCG2
SE_02_013900116 chr2:231102476-231133209 30733 116 3 685 42 1 80 274 PSMD1,HTR2B
SE_02_013900200 chr2:231158443-231202007 43564 200 6 1153 144 3 73 397 PSMD1,ARMC9,HTR2B
SE_02_013900158 chr2:36662919-36709014 46095 158 4 1502 150 6 139 49 VIT
SE_02_013900031 chr2:36728961-36786440 57479 31 9 1914 83 7 155 533 VIT
SE_02_013900156 chr2:43508112-43542936 34824 156 5 1027 84 6 129 99 THADA
SE_02_013900216 chr2:54204773-54232728 27955 216 2 745 81 2 67 0 ACYP2,TSPYL6
SE_02_013900142 chr2:54260496-54292746 32250 142 3 958 114 0 23 0 ACYP2,TSPYL6,C2ORF73
SE_02_013900104 chr20:10427024-10473600 46576 104 9 1335 144 6 100 274 C20ORF94,MKKS
SE_02_013900155 chr20:10494555-10518366 23811 155 4 605 54 2 89 0 C20ORF94
SE_02_013900041 chr20:10616593-10675583 58990 41 5 1528 74 13 835 2308 C20ORF94,JAG1
SE_02_013900162 chr20:31557026-31611205 54179 162 14 1592 156 7 258 1212 HM13,ID1,MIR3193,PSIMCT-1,COX4I2
SE_02_013900140 chr20:47346181-47363250 17069 140 3 427 4 4 142 808 ZMYND8,LOC100131496
SE_02_013900205 chr20:50717950-50749091 31141 205 7 837 59 2 111 236 PARD6B,BCAS4
SE_02_013900254 chr20:52970862-52996301 25439 254 5 677 2 2 172 256 TSHZ2
SE_02_013900203 chr20:53074800-53125723 50923 203 5 1459 21 6 216 84 TSHZ2
SE_02_013900092 chr20:53567742-53598391 30649 92 5 830 25 5 149 915 ZNF217
SE_02_013900107 chr20:53900950-53944464 43514 107 5 1185 24 5 64 106 BCAS1,SUMO1P1
SE_02_013900146 chr21:16383618-16456899 73281 146 16 2319 34 20 200 18 C21ORF34,MIR99A
SE_02_013900165 chr21:17174441-17218502 44061 165 6 1776 1 0 45 0 C21ORF37,CXADR
SE_02_013900121 chr21:17254820-17271394 16574 121 1 565 0 1 55 0 C21ORF37,CXADR
SE_02_013900096 chr21:25263105-25352355 89250 96 17 2193 120 9 266 0 NCRNA00158
SE_02_013900150 chr21:28792099-28830762 38663 150 4 1048 148 2 105 0 N6AMT1
SE_02_013900065 chr21:28902953-28944878 41925 65 5 1047 158 4 72 426 LTN1,N6AMT1
SE_02_013900226 chr21:29055697-29094289 38592 226 4 1015 101 1 86 1040 CCT8,C21ORF7,USP16,RWDD2B
SE_02_013900182 chr22:40173977-40197400 23423 182 5 536 24 1 135 53 TNRC6B
SE_02_013900217 chr22:46067145-46089914 22769 217 2 701 22 1 169 131 LOC400931,C22ORF26,MIRLET7A3,MIR3619,LOC100271722,LOC150381,MIRLET7B
SE_02_013900257 chr3:106961583-107007824 46241 257 5 1146 0 10 95 46 LOC100302640
SE_02_013900103 chr3:107657181-107692012 34831 103 1 819 18 4 96 47 BBX
SE_02_013900221 chr3:108150659-108194387 43728 221 11 1140 241 1 153 312 IFT57
SE_02_013900176 chr3:113079103-113118654 39551 176 8 1117 123 10 153 0 C3ORF17
SE_02_013900269 chr3:132218773-132285749 66976 269 11 1731 213 9 90 267 ACPP
SE_02_013900218 chr3:25425778-25506081 80303 218 14 2547 23 11 383 457 RARB
SE_02_013900238 chr3:29757171-29779730 22559 238 2 645 1 3 71 31 RBMS3
SE_02_013900026 chr3:29889559-29977707 88148 26 11 2259 34 4 150 153 RBMS3
SE_02_013900212 chr3:30001716-30059762 58046 212 7 1722 5 5 75 465 RBMS3,TGFBR2
SE_02_013900227 chr3:30154644-30200678 46034 227 11 1310 2 6 109 0 TGFBR2
SE_02_013900027 chr3:30348020-30411570 63550 27 9 1843 90 5 45 0 TGFBR2
SE_02_013900021 chr3:4492380-4601279 108899 21 13 3447 201 12 403 292 ITPR1,SUMF1
SE_02_013900113 chr3:56250003-56321233 71230 113 8 1809 89 0 158 90 ERC2
SE_02_013900127 chr3:57093780-57165552 71772 127 17 1890 156 9 352 1356 IL17RD,SPATA12,ARHGEF3,HESX1
SE_02_013900147 chr3:64990195-65037993 47798 147 6 1718 77 6 188 178 MIR548A2
SE_02_013900048 chr4:106545910-106638301 92391 48 12 2389 82 3 232 0 LOC100507096
SE_02_013900201 chr4:106897004-106946970 49966 201 9 1265 11 8 178 275 DKK2
SE_02_013900004 chr4:112838184-113031102 192918 4 25 4913 103 10 299 17 ANK2
SE_02_013900149 chr4:118888152-118981697 93545 149 14 2449 168 8 150 94 SYNPO2
SE_02_013900198 chr4:123822206-123878189 55983 198 8 1409 55 5 147 251 LOC285419
SE_02_013900110 chr4:124249435-124325148 75713 110 12 1934 14 1 21 0 ANKRD50
SE_02_013900109 chr4:143229543-143303971 74428 109 11 2057 224 18 103 0 USP38,GAB1
SE_02_013900040 chr4:147921341-147995502 74161 40 9 1967 40 2 112 206 ARHGAP10
SE_02_013900163 chr4:152284814-152322332 37518 163 5 945 21 1 171 75 FBXW7
SE_02_013900185 chr4:152340994-152386460 45466 185 3 1030 37 5 219 238 FBXW7
SE_02_013900094 chr4:153466301-153578161 111860 94 29 3264 102 16 264 387 KIAA0922
SE_02_013900052 chr4:159150250-159207307 57057 52 10 1521 68 1 74 0 MIR3688
SE_02_013900277 chr4:168991751-169025806 34055 277 6 882 62 6 72 366 CBR4
SE_02_013900090 chr4:169045651-169104759 59108 90 13 1855 77 5 212 225 SH3RF1,CBR4
SE_02_013900224 chr4:171976416-172019983 43567 224 11 1414 6 4 38 0 GALNTL6
SE_02_013900064 chr4:172079261-172157804 78543 64 13 1987 5 4 52 0 GALNTL6
SE_02_013900009 chr4:175694877-175835759 140882 9 18 3702 72 19 246 518 GPM6A
SE_02_013900014 chr4:4471483-4526650 55167 14 4 1577 98 5 251 25 STX18
SE_02_013900088 chr4:47685838-47769542 83704 88 8 2107 156 4 151 131 CORIN
SE_02_013900258 chr4:47806743-47840912 34169 258 5 806 79 1 86 148 CORIN
SE_02_013900071 chr4:57017878-57107768 89890 71 24 2517 381 22 244 520 POLR2B,IGFBP7,C4ORF14,LOC255130
SE_02_013900008 chr4:94755977-94940826 184849 8 18 5155 241 33 496 156 BMPR1B
SE_02_013900276 chr4:94959102-95022719 63617 276 12 1689 107 4 188 59 BMPR1B
SE_02_013900272 chr4:95043208-95096695 53487 272 9 1492 69 3 165 105 BMPR1B
SE_02_013900197 chr5:158222699-158265270 42571 197 5 1150 15 5 163 0 CLINT1
SE_02_013900264 chr5:163501891-163512503 10612 264 2 263 21 1 2 249 MAT2B,HMMR,NUDCD2
SE_02_013900089 chr5:171890516-171981925 91409 89 18 2088 1 4 203 274 FBXW11
SE_02_013900167 chr5:172266105-172330983 64878 167 11 1772 124 2 57 187 UBTD2
SE_02_013900190 chr5:38750973-38811422 60449 190 7 1823 71 7 179 0 OSMR
SE_02_013900005 chr5:58639993-58798554 158561 5 18 4016 189 16 314 32 RAB3C
SE_02_013900270 chr5:58812531-58853850 41319 270 6 1065 12 5 99 106 RAB3C,PDE4D
SE_02_013900265 chr5:58869756-58891970 22214 265 3 572 1 4 24 0 PDE4D
SE_02_013900016 chr5:59167415-59278124 110709 16 15 2905 16 10 253 431 PDE4D
SE_02_013900175 chr5:72449410-72470193 20783 175 2 584 25 5 125 425 ZNF366
SE_02_013900159 chr5:75648227-75682483 34256 159 5 877 119 11 94 502 POC5
SE_02_013900093 chr5:76600053-76641895 41842 93 5 1186 167 7 73 730 IQGAP2,F2RL2
SE_02_013900166 chr5:76713964-76745410 31446 166 5 807 56 3 58 545 F2R,NCRUPAR
SE_02_013900283 chr5:79984020-80015807 31787 283 5 807 69 3 93 506 MTX3,THBS4
SE_02_013900125 chr5:81844930-81860069 15139 125 1 322 19 1 170 0 SSBP2
SE_02_013900152 chr5:92550837-92578420 27583 152 1 617 0 5 157 0 FLJ42709
SE_02_013900045 chr5:93575437-93607072 31635 45 1 593 16 1 705 1079 NR2F1,FLJ42709,MIR2277
SE_02_013900133 chr6:110516501-110543344 26843 133 6 736 64 2 1 0 SLC22A16
SE_02_013900151 chr6:112177154-112256157 79003 151 21 1998 196 6 264 684 LAMA4
SE_02_013900057 chr6:112268784-112338563 69779 57 8 1849 84 14 182 33 LAMA4,RFPL4B
SE_02_013900073 chr6:121414334-121455766 41432 73 9 1072 55 5 129 370 GJA1
SE_02_013900003 chr6:121998248-122126579 128331 3 9 3516 300 5 260 0 HSF2
SE_02_013900076 chr6:122176604-122204371 27767 76 2 670 48 0 51 0 HSF2
SE_02_013900123 chr6:129634294-129686817 52523 123 10 1363 58 11 154 87 ARHGAP18
SE_02_013900044 chr6:130966412-131065455 99043 44 21 2483 306 7 139 290 EPB41L2
SE_02_013900206 chr6:142328679-142390007 61328 206 10 1468 53 29 216 222 GPR126
SE_02_013900056 chr6:148490229-148531004 40775 56 7 1141 31 7 234 398 SASH1
SE_02_013900214 chr6:149028953-149080711 51758 214 8 1385 96 9 177 395 UST,TAB2
SE_02_013900086 chr6:152549352-152606839 57487 86 6 1516 88 8 68 0 SYNE1
SE_02_013900222 chr6:17206944-17228698 21754 222 3 554 0 1 80 0 RBM24
SE_02_013900135 chr6:25164134-25196827 32693 135 3 922 67 7 4 64 CMAH
SE_02_013900128 chr6:54051151-54114725 63574 128 7 1591 73 8 165 74 C6ORF142
SE_02_013900098 chr6:60360738-60428611 67873 98 5 697 88 2 97 55 PRIM2
SE_02_013900100 chr6:63762489-63825312 62823 100 10 1343 43 4 54 219 EYS,PHF3
SE_02_013900170 chr6:91157651-91199932 42281 170 4 1178 1 2 175 0 MAP3K7
SE_02_013900204 chr6:91257090-91306721 49631 204 6 1516 14 9 222 0 MAP3K7
SE_02_013900124 chr7:104976696-105021678 44982 124 7 1214 52 1 137 1742 MLL5,LOC100216545
SE_02_013900273 chr7:107166498-107183265 16767 273 1 443 31 0 80 396 HBP1
SE_02_013900261 chr7:120987248-121008672 21424 261 3 551 37 4 93 188 C7ORF58,ING3
SE_02_013900082 chr7:133645615-133696813 51198 82 5 1272 87 4 154 0 EXOC4
SE_02_013900066 chr7:134847438-134965955 118517 66 15 2817 189 8 437 1037 CALD1,AGBL3
SE_02_013900028 chr7:147854556-147918549 63993 28 10 2245 2 26 188 62 MIR548F3,CNTNAP2,MIR548T
SE_02_013900193 chr7:15070800-15089808 19008 193 3 654 1 3 37 0 DGKB,TMEM195
SE_02_013900050 chr7:15183390-15231390 48000 50 3 1623 24 5 165 109 TMEM195
SE_02_013900018 chr7:15278645-15354241 75596 18 6 2744 29 4 218 0 TMEM195
SE_02_013900024 chr7:15454012-15518890 64878 24 2 2078 83 6 196 0 TMEM195
SE_02_013900047 chr7:15599657-15694071 94414 47 12 3013 130 13 293 702 MEOX2,TMEM195
SE_02_013900058 chr7:15750505-15820810 70305 58 8 2120 44 5 117 0 MEOX2
SE_02_013900055 chr7:16020793-16100707 79914 55 10 2474 109 3 267 318 ISPD
SE_02_013900248 chr7:16397109-16425208 28099 248 8 1007 104 1 47 208 ISPD,SOSTDC1
SE_02_013900138 chr7:17911857-17988821 76964 138 14 2466 157 4 128 126 SNX13,PRPS1L1
SE_02_013900275 chr7:18084248-18135449 51201 275 9 1400 25 3 260 143 PRPS1L1
SE_02_013900019 chr7:18337089-18506572 169483 19 22 4654 31 14 580 165 HDAC9
SE_02_013900263 chr7:19095033-19122334 27301 263 4 860 0 3 372 438 TWIST1,FERD3L
SE_02_013900115 chr7:27095935-27119263 23328 115 1 549 51 10 538 1428 HOXA1,HOXA2,HOXA3,HOXA6,HOXA5,HOXA7,HOXA4,HOXA9
SE_02_013900095 chr7:55049870-55099942 50072 95 6 1470 94 9 136 0 EGFR
SE_02_013900213 chr7:84018804-84117057 98253 213 21 2707 263 22 403 94 SEMA3A
SE_02_013900268 chr7:84996112-85023214 27102 268 1 630 14 1 186 434 SEMA3D,SEMA3A
SE_02_013900145 chr8:107407296-107500526 93230 145 17 2433 90 17 421 113 ANGPT1
SE_02_013900230 chr8:125212961-125232013 19052 230 2 431 25 0 59 0 NSMCE2
SE_02_013900087 chr8:128859558-128882995 23437 87 3 623 0 7 72 0 LOC728724
SE_02_013900168 chr8:13435488-13518019 82531 168 17 3275 62 17 294 194 DLC1,C8ORF48
SE_02_013900011 chr8:25898430-26049668 151238 11 24 4376 135 10 1272 741 EBF2
SE_02_013900042 chr8:30422424-30556149 133725 42 27 3466 223 9 214 600 RBPMS
SE_02_013900078 chr8:39887454-39952958 65504 78 13 1859 144 1 20 578 IDO1,IDO2,ADAM2
SE_02_013900239 chr8:74345125-74385206 40081 239 5 1089 95 8 129 563 GDAP1,JPH1
SE_02_013900101 chr8:74701166-74760881 59715 101 5 1482 51 0 72 324 MIR2052,FLJ39080
SE_02_013900080 chr8:80136860-80231783 94923 80 18 2538 253 12 79 231 TPD52
SE_02_013900069 chr8:92059283-92106063 46780 69 5 965 10 4 631 555 RUNX1T1
SE_02_013900161 chr9:105956933-105996155 39222 161 3 1021 51 3 314 0 TMEM38B
SE_02_013900236 chr9:13262830-13284774 21944 236 1 620 20 2 46 168 MPDZ
SE_02_013900177 chr9:13408288-13450079 41791 177 4 1200 34 0 274 159 FLJ41200
SE_02_013900174 chr9:14863229-14913345 50116 174 8 1838 109 6 106 312 FREM1
SE_02_013900119 chr9:16674737-16738703 63966 119 13 1980 76 11 657 395 BNC2
SE_02_013900038 chr9:16822114-16874161 52047 38 6 1800 41 11 383 282 BNC2
SE_02_013900250 chr9:17003155-17023232 20077 250 2 610 51 2 152 0 CNTLN
SE_02_013900079 chr9:18349056-18443569 94513 79 11 3077 33 3 402 0 ADAMTSL1
SE_02_013900196 chr9:18654664-18710908 56244 196 15 1770 61 6 305 524 ADAMTSL1,MIR3152
SE_02_013900251 chr9:19008384-19031397 23013 251 4 930 138 2 41 0 FAM154A,SCARNA8,RRAGA
SE_02_013900137 chr9:26940099-26959233 19134 137 1 532 61 1 40 293 IFT74,PLAA,C9ORF82,LRRC19
SE_02_013900195 chr9:27078243-27119642 41399 195 9 1345 124 5 122 106 TEK
SE_02_013900262 chr9:70405638-70422968 17330 262 2 396 19 0 297 385 KLF9
SE_02_013900259 chr9:70585201-70603983 18782 259 3 481 17 1 136 192 TRPM3,KLF9
SE_02_013900266 chr9:81665069-81706126 41057 266 7 1191 47 4 278 526 TLE1
SE_02_013900102 chr9:81818252-81850128 31876 102 4 858 0 5 178 0 FAM75D5,TLE1
SE_02_013900267 chr9:86432806-86473633 40827 267 8 1232 58 4 43 0 ZCCHC6
SE_02_013900169 chr9:92397618-92415562 17944 169 1 406 30 1 41 200 CENPP,OMD,OGN
SE_02_013900243 chr9:94739942-94807409 67467 243 10 1634 175 8 211 369 C9ORF3,MIR2278
SE_02_013900081 chr9:94821076-94879644 58568 81 8 1433 110 2 133 0 C9ORF3,MIR2278
SE_02_013900139 chrX:139811836-139883693 71857 139 13 1258 21 0 117 158 ATP11C,MIR505
SE_02_013900157 chrX:19639035-19686763 47728 157 7 832 45 1 239 231 SH3KBP1
SE_02_013900105 chrX:38004532-38059529 54997 105 6 1116 121 3 67 208 SYTL5,CXORF27

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM1835841
Input ID: Name:GSM1835864
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb