Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: LOC102546228 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_068300356 chr5:125888351-125909037 Sample_02_0683 Lung DMS114 356 8 582 6 2 43 0 LOC102546228,LOC101927460
SE_02_068300034 chr5:125949975-126066016 Sample_02_0683 Lung DMS114 34 54 3541 116 35 395 0 LOC102546228,GRAMD3
SE_02_082500234 chr5:125954032-126063916 Sample_02_0825 Stomach SNU484 234 37 3347 112 35 378 0 LOC102546228,LOC101927488
SE_02_141000453 chr5:125992259-126017634 Sample_02_1410 Brain GSC6 453 4 715 21 2 140 0 LOC102546228
SE_02_086200078 chr5:125998661-126058946 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 78 13 1799 99 5 253 0 LOC102546228
SE_02_086400085 chr5:125998934-126058531 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 85 9 1768 99 5 253 0 LOC102546228
SE_02_086300092 chr5:125998962-126063506 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 92 16 1938 107 6 260 0 LOC102546228,LOC101927488
SE_02_086600065 chr5:125998981-126058548 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 65 10 1765 99 5 253 0 LOC102546228
SE_02_086500083 chr5:125999330-126058517 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 83 10 1752 98 5 253 0 LOC102546228
SE_02_151700479 chr5:125999892-126018197 Sample_02_1517 Mammary gland non-transformed human mammary epithelial cell 479 8 507 20 2 140 0 LOC102546228
SE_02_075200716 chr5:126002266-126036663 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 716 4 1018 53 2 128 0 LOC102546228
SE_02_049400212 chr5:126040556-126063710 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 212 7 730 49 4 103 0 LOC102546228,LOC101927488
SE_02_049500247 chr5:126040800-126056349 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 247 3 470 33 2 95 0 LOC102546228,LOC101927488
SE_02_129000329 chr5:126042669-126058012 Sample_02_1290 Lung NCI-H69_p8-15 329 4 477 38 3 92 0 LOC102546228
SE_02_106400771 chr5:126042997-126056962 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 771 4 422 31 1 90 0 LOC102546228
SE_02_077502047 chr5:126043265-126072665 Sample_02_0775 Pancreas EndoC-BH1_SE 2047 9 953 62 4 106 0 LOC102546228,LOC101927488
SE_02_157200443 chr5:126043774-126058781 Sample_02_1572 iPSCs FiPSC 443 3 460 36 2 88 0 LOC102546228,GRAMD3
SE_02_157000383 chr5:126044225-126058999 Sample_02_1570 iPSCs EiPSC 383 2 452 35 2 80 0 LOC102546228,LOC101927488
SE_02_117200749 chr5:126053792-126059538 Sample_02_1172 Embryo H9 WT 749 1 189 10 1 30 0 LOC102546228,GRAMD3
SE_02_156700523 chr5:126053930-126058936 Sample_02_1567 iPSCs CiPSC 523 2 160 10 1 22 0 LOC102546228,GRAMD3
SE_02_086400161 chr5:126094599-126128724 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 161 9 971 50 2 78 0 LOC102546228
SE_02_086600149 chr5:126095280-126128416 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 149 5 948 48 2 78 0 LOC102546228
SE_02_086500169 chr5:126096114-126128975 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 169 7 945 45 2 78 0 LOC102546228
SE_02_086200160 chr5:126096394-126129128 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 160 7 942 46 2 77 0 LOC102546228
SE_02_086300136 chr5:126096436-126128463 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 136 4 925 45 2 77 0 LOC102546228,LOC101927488
SE_02_151600749 chr5:126105980-126127400 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 749 7 595 20 1 69 0 LOC102546228
SE_02_108400604 chr5:126106391-126120315 Sample_02_1084 Blood KBM7-derived near haploid cells 604 7 396 12 1 39 0 LOC102546228,GRAMD3
SE_02_141001336 chr5:126120033-126144105 Sample_02_1410 Brain GSC6 1336 4 684 24 0 80 0 LOC102546228
SE_02_055100140 chr5:126120937-126142423 Sample_02_0551 Other Aska-BAF47KO1 shSSX 140 4 589 20 0 77 0 LOC102546228
SE_02_126700426 chr5:126121664-126141397 Sample_02_1267 Bone Im-GCT-4072_G34W 426 3 534 19 0 71 0 LOC102546228
SE_02_126300512 chr5:126122324-126145904 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 512 4 664 24 0 70 0 LOC102546228

Genomic distribution of SEs associated with LOC102546228

The strength of the tissue affected by the gene


Expression of LOC102546228