SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000259687
Gene: LINC01220 Gene type: lncRNA
Strand: + External links:
Genomic region: chr14:75294404-75298109 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_118300037 chr14:75229821-75344510 Sample_02_1183 Brain GBM12 37 36 3065 167 15 610 920 LINC01220,FOS
SE_02_096500024 chr14:75256278-75336375 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 24 15 2159 120 12 434 920 LINC01220,FOS
SE_02_097200018 chr14:75256817-75336444 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 18 13 2143 120 12 434 920 LINC01220,FOS
SE_02_095600112 chr14:75256869-75341955 Sample_02_0956 Brain IDH1_2658 112 18 2276 126 12 465 920 LINC01220,FOS
SE_02_095800106 chr14:75256884-75336548 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 106 12 2140 119 12 434 920 LINC01220,FOS
SE_02_117700043 chr14:75257101-75342792 Sample_02_1177 Brain GBM05 43 20 2300 125 12 465 920 LINC01220,FOS
SE_02_119300096 chr14:75257216-75316187 Sample_02_1193 Brain GBM27 96 12 1560 105 8 413 920 LINC01220,FOS
SE_02_119400038 chr14:75257286-75344479 Sample_02_1194 Brain GBM28 38 26 2332 127 12 465 920 LINC01220,FOS
SE_02_118700068 chr14:75257388-75315945 Sample_02_1187 Brain GBM16 68 19 1551 105 8 413 920 LINC01220,FOS
SE_02_119800108 chr14:75257468-75315876 Sample_02_1198 Brain GBM34 108 10 1546 105 8 412 920 LINC01220,FOS
SE_02_046500145 chr14:75257571-75343030 Sample_02_0465 Adipose subcutaneous adipocytes 145 28 2286 125 12 464 920 LINC01220,FOS,JDP2,FLVCR2
SE_02_090700353 chr14:75257576-75315727 Sample_02_0907 Heart left ventricle_DCM_LV1223 353 12 1535 105 8 412 920 LINC01220,FOS
SE_02_118000059 chr14:75257691-75315842 Sample_02_1180 Brain GBM09 59 16 1535 104 8 412 920 LINC01220,FOS
SE_02_091200444 chr14:75257742-75315583 Sample_02_0912 Heart left ventricle_DCM_LV1300 444 11 1525 104 8 412 920 LINC01220,FOS
SE_02_090800667 chr14:75257746-75315746 Sample_02_0908 Heart left ventricle_DCM_LV1262 667 12 1530 104 8 412 920 LINC01220,FOS
SE_02_088700389 chr14:75257765-75315622 Sample_02_0887 Heart left ventricle_LV1121 389 13 1526 104 8 412 920 LINC01220,FOS
SE_02_088800277 chr14:75257768-75315750 Sample_02_0888 Heart left ventricle_LV1160 277 14 1530 104 8 412 920 LINC01220,FOS
SE_02_046600343 chr14:75257792-75315848 Sample_02_0466 Adipose visceral adipocytes 343 22 1534 104 8 412 920 LINC01220,FOS
SE_02_089800694 chr14:75257875-75315570 Sample_02_0898 Heart left ventricle_LV1356 694 11 1523 104 8 412 920 LINC01220,FOS
SE_02_118500140 chr14:75257885-75315680 Sample_02_1185 Brain GBM14 140 14 1524 104 8 412 920 LINC01220,FOS
SE_02_089000323 chr14:75257891-75315679 Sample_02_0890 Heart left ventricle_LV1200 323 10 1523 104 8 412 920 LINC01220,FOS
SE_02_090100459 chr14:75257919-75315748 Sample_02_0901 Heart left ventricle_LV1471 459 19 1525 104 8 412 920 LINC01220,FOS
SE_02_131000833 chr14:75257930-75315744 Sample_02_1310 Bone marrow ASMSCs 833 9 1523 104 8 412 920 LINC01220,FOS
SE_02_095300102 chr14:75257953-75341921 Sample_02_0953 Brain H3.3K27M_1840 102 15 2239 124 12 464 920 LINC01220,FOS
SE_02_091000592 chr14:75257989-75315569 Sample_02_0910 Heart left ventricle_DCM_LV1275 592 11 1513 102 8 412 920 LINC01220,FOS
SE_02_121100077 chr14:75258068-75315545 Sample_02_1211 Brain GBM21 77 17 1510 102 8 412 920 LINC01220,FOS
SE_02_117900086 chr14:75272996-75344315 Sample_02_1179 Brain GBM08 86 13 1958 105 8 381 859 LINC01220,FOS
SE_02_117300690 chr14:75273260-75311326 Sample_02_1173 Brain GBM01 690 10 1028 72 2 329 859 LINC01220,FOS
SE_02_119000109 chr14:75273315-75315937 Sample_02_1190 Brain GBM24 109 14 1179 82 4 329 859 LINC01220,FOS
SE_02_119900221 chr14:75273350-75342528 Sample_02_1199 Brain GBM35 221 12 1910 102 8 381 859 LINC01220,FOS
SE_02_131300112 chr14:75273351-75303553 Sample_02_1313 Brain hMGLs_CD33_SNP 112 9 798 55 2 323 859 LINC01220,FOS
SE_02_145800147 chr14:75273456-75303628 Sample_02_1458 Pancreas THP1+PANC1_shNC 147 8 797 55 2 322 859 LINC01220,FOS
SE_00_005100514 chr14:75273478-75315697 Sample_00_0051 Adrenal gland adrenal gland 30y 514 11 1165 82 4 327 859 LINC01220,FOS
SE_02_145900139 chr14:75273484-75303756 Sample_02_1459 Pancreas THP1+PANC1_shCTCF 139 7 800 58 2 320 859 LINC01220,FOS
SE_02_120500597 chr14:75273532-75344334 Sample_02_1205 Brain NB3 597 15 1944 104 8 376 859 LINC01220,FOS
SE_02_131200082 chr14:75274018-75303642 Sample_02_1312 Brain hMGLs_WT 82 12 782 54 2 310 859 LINC01220,FOS
SE_02_106900504 chr14:75274244-75302128 Sample_02_1069 Bone marrow Bone marrow aspirate 504 5 731 52 2 310 859 LINC01220,FOS
SE_02_120200280 chr14:75274307-75315781 Sample_02_1202 Brain GBM38 280 9 1152 81 4 316 859 LINC01220,FOS
SE_02_083700640 chr14:75274354-75303693 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 640 5 780 57 2 308 859 LINC01220,FOS
SE_02_134800060 chr14:75274367-75303709 Sample_02_1348 Leukophereses leukophereses_p408 60 7 780 57 2 308 859 LINC01220,FOS
SE_02_125800200 chr14:75274417-75298808 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 200 8 617 45 2 304 859 LINC01220,FOS
SE_02_083600915 chr14:75274421-75304122 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 915 6 791 57 2 308 859 LINC01220,FOS
SE_02_134900091 chr14:75274429-75303412 Sample_02_1349 Leukophereses leukophereses_p411 91 11 770 54 2 308 859 LINC01220,FOS
SE_02_046100147 chr14:75274440-75303554 Sample_02_0461 Blood MV-4-11-B cells 147 9 774 54 2 308 859 LINC01220,FOS
SE_02_046300294 chr14:75274483-75302307 Sample_02_0463 Blood OCI-AML3 cells 294 11 733 52 2 308 859 LINC01220,FOS
SE_02_149600257 chr14:75274638-75303485 Sample_02_1496 Other monocyte-derived dendritic cells_R848_24h 257 10 763 54 2 308 859 LINC01220,FOS
SE_02_149400051 chr14:75274638-75303604 Sample_02_1494 Other monocyte-derived dendritic cells_0h 51 18 766 54 2 308 859 LINC01220,FOS
SE_02_153200588 chr14:75274767-75302614 Sample_02_1532 Mammary gland MCF10A 588 5 734 52 2 308 859 LINC01220,FOS
SE_02_134700036 chr14:75274820-75303754 Sample_02_1347 Leukophereses leukophereses_p401 36 11 768 57 2 308 859 LINC01220,FOS
SE_02_070300037 chr14:75275299-75315829 Sample_02_0703 Pancreas PATU8988S WT 37 7 1125 79 3 290 859 LINC01220,FOS
SE_02_070500120 chr14:75275445-75303614 Sample_02_0705 Pancreas AsPC1 WT 120 7 748 52 1 281 859 LINC01220,FOS
SE_02_088400240 chr14:75275500-75303641 Sample_02_0884 Colon LoVo 240 6 748 52 1 281 859 LINC01220,FOS
SE_02_136500091 chr14:75275711-75303597 Sample_02_1365 Pancreas AsPC1-untreated 91 7 744 52 1 281 859 LINC01220,FOS
SE_02_072400112 chr14:75275918-75303509 Sample_02_0724 Pancreatic duct AsPC1_GFP_DOX 112 6 735 52 1 281 859 LINC01220,FOS
SE_02_089100791 chr14:75276031-75315552 Sample_02_0891 Heart left ventricle_LV1202 791 10 1103 79 3 287 859 LINC01220,FOS
SE_02_070900269 chr14:75276154-75303641 Sample_02_0709 Pancreas hT85_organoid 269 10 736 52 1 280 859 LINC01220,FOS
SE_02_071700088 chr14:75276177-75303567 Sample_02_0717 Pancreas HPAFII_GFP_DOX 88 8 734 52 1 280 859 LINC01220,FOS
SE_02_072100077 chr14:75276235-75301762 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 77 6 679 50 1 277 859 LINC01220,FOS
SE_00_004600422 chr14:75276307-75315695 Sample_00_0046 Heart right ventricle_34y 422 9 1102 79 3 283 859 LINC01220,FOS
SE_02_078800132 chr14:75276331-75336461 Sample_02_0788 Brain 3565 132 9 1685 92 7 304 859 LINC01220,FOS
SE_02_133100518 chr14:75276335-75303604 Sample_02_1331 Blood Molm13_CTRL 518 8 733 52 1 277 859 LINC01220,FOS
SE_02_075900346 chr14:75276338-75303643 Sample_02_0759 Ovary BIN-67_Control 346 4 734 52 1 277 859 LINC01220,FOS
SE_02_153300444 chr14:75276381-75311299 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 444 6 959 69 1 283 859 LINC01220,FOS,ZC2HC1C
SE_02_151200533 chr14:75276382-75299769 Sample_02_1512 Lung Purified AT2 cells 533 5 606 44 1 277 859 LINC01220,FOS
SE_04_000900576 chr14:75276383-75307826 Sample_04_0009 Lung A549 576 6 863 63 1 277 859 LINC01220,FOS
SE_02_139700101 chr14:75276405-75302235 Sample_02_1397 Stomach SNU16 101 6 691 50 1 277 859 LINC01220,FOS
SE_02_066000570 chr14:75276547-75303582 Sample_02_0660 Mammary gland MCF10DCIS 570 6 730 52 1 277 859 LINC01220,FOS
SE_02_071000220 chr14:75276575-75296615 Sample_02_0710 Pancreas hN34_organoid 220 6 511 37 1 269 859 LINC01220,FOS
SE_04_000500146 chr14:75276655-75303582 Sample_04_0005 Lung A549 FOXA2 overexpressed 146 6 730 52 1 274 859 LINC01220,FOS
SE_04_000600221 chr14:75276709-75303557 Sample_04_0006 Lung A549 GFP control 221 6 726 52 1 274 859 LINC01220,FOS
SE_02_047800611 chr14:75276760-75315754 Sample_02_0478 Colon normal colon mucosa 611 11 1099 79 3 280 859 LINC01220,FOS
SE_02_046400110 chr14:75283424-75301819 Sample_02_0464 Bone marrow MOLM-13 110 11 513 44 0 83 267 LINC01220,FOS
SE_02_068200255 chr14:75287967-75342405 Sample_02_0682 Blood Kasumi-1 255 8 1557 83 6 125 267 LINC01220,FOS
SE_02_084100633 chr14:75292850-75303780 Sample_02_0841 Blood THP-1_untr 633 1 313 28 0 57 267 LINC01220,FOS
SE_02_093700275 chr14:75293016-75315631 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 275 5 673 52 2 63 267 LINC01220,FOS
SE_02_126701059 chr14:75293243-75296606 Sample_02_1267 Bone Im-GCT-4072_G34W 1059 1 83 10 0 49 266 LINC01220,FOS
SE_02_142600398 chr14:75293305-75311439 Sample_02_1426 Shoulder fibroblast_341 398 4 534 42 0 63 267 LINC01220,FOS
SE_02_147000879 chr14:75293391-75296700 Sample_02_1470 Umbilical Vein H441 879 1 82 11 0 49 267 LINC01220,FOS
SE_02_147100906 chr14:75293439-75311224 Sample_02_1471 Blood Outgrowth Endothelia BOEC 906 5 525 42 0 63 267 LINC01220,FOS
SE_02_147200718 chr14:75293448-75296462 Sample_02_1472 Fetal lung IMR-90 718 1 73 8 0 49 249 LINC01220,FOS
SE_02_118100840 chr14:75293537-75316365 Sample_02_1181 Brain GBM10 840 6 693 53 2 63 267 LINC01220,FOS
SE_01_010600538 chr14:75293846-75299600 Sample_01_0106 Adrenal gland adrenal gland 54y 538 4 156 16 0 57 267 LINC01220,FOS
SE_02_118900672 chr14:75293888-75315831 Sample_02_1189 Brain GBM22 672 4 665 51 2 63 267 LINC01220,FOS
SE_02_112900636 chr14:75294379-75315503 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 636 12 646 51 2 35 218 LINC01220,FOS
SE_02_112500355 chr14:75295126-75311192 Sample_02_1125 Adipose visceral adipose_CS_VC06 355 9 489 39 0 26 101 LINC01220,FOS
SE_02_112200243 chr14:75295611-75311206 Sample_02_1122 Adipose visceral adipose_CS_H507 243 6 474 37 0 15 101 LINC01220,FOS
SE_02_082700937 chr14:75298820-75314137 Sample_02_0827 Stomach normal gastric 937 4 480 32 1 10 0 FOS,LINC01220
SE_02_156000553 chr14:75310424-75367561 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 553 16 1615 70 7 110 0 FOS,LINC01220
SE_02_135000771 chr14:75332414-75344898 Sample_02_1350 Leukophereses leukophereses_p456 771 6 300 10 1 35 0 LINC01220
SE_02_119101176 chr14:75333492-75344692 Sample_02_1191 Brain GBM25 1176 3 271 10 1 33 0 LINC01220
SE_00_005500765 chr14:75333500-75343115 Sample_00_0055 Spleen spleen 34y 765 4 237 9 1 33 0 LINC01220
SE_02_156400171 chr14:75334433-75373442 Sample_02_1564 Gastrointestinal Stromal GIST-430 171 12 1072 54 1 99 0 LINC01220
Genomic distribution of SEs associated with LINC01220
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC01220

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)