SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000112769
Gene: LAMA4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr6:112107931-112254939 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_002700014 chr6:112170021-112255562 Sample_02_0027 Umbilical vein HUVEC_VEGF_4h 14 19 2181 209 6 282 808 LAMA4
SE_02_013900151 chr6:112177154-112256157 Sample_02_0139 Liver RT236 151 21 1998 196 6 264 684 LAMA4
SE_01_007700102 chr6:112178541-112299852 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 102 19 3089 264 12 371 675 LAMA4,RFPL4B
SE_01_008300071 chr6:112178743-112299991 Sample_01_0083 Sigmoid colon sigmoid-colon 71 13 3084 262 12 371 675 LAMA4,RFPL4B
SE_02_061400018 chr6:112178822-112339418 Sample_02_0614 Liposarcoma MLPS_T2 18 66 4160 302 22 472 675 LAMA4,LOC101927640,RFPL4B
SE_01_008800067 chr6:112178825-112312122 Sample_01_0088 Tibial nerve tibial-nerve 67 19 3425 279 17 398 675 LAMA4,RFPL4B
SE_01_007400086 chr6:112178861-112300004 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 86 11 3081 260 12 370 675 LAMA4,RFPL4B
SE_02_090400176 chr6:112181111-112310658 Sample_02_0904 Heart left ventricle_DCM_LV1028 176 38 3335 271 17 383 675 LAMA4,LOC101927640,RFPL4B
SE_02_026100067 chr6:112182050-112255660 Sample_02_0261 Osteoblastic hFOB_differentiated 67 6 1865 179 6 251 642 LAMA4
SE_01_009200705 chr6:112182396-112255605 Sample_01_0092 Vagina vagina 705 21 1851 178 6 251 642 LAMA4
SE_01_007800121 chr6:112182455-112299725 Sample_01_0078 Heart left ventricle heart-left-ventricle 121 15 2978 247 12 362 675 LAMA4,RFPL4B
SE_02_090500145 chr6:112182627-112310943 Sample_02_0905 Heart left ventricle_DCM_LV1033 145 32 3301 266 17 383 675 LAMA4,LOC101927640,RFPL4B
SE_02_053300090 chr6:112182808-112311894 Sample_02_0533 Blood vessel Circle of Willis_54y 90 43 3320 265 17 390 675 LAMA4,LOC101927640,RFPL4B
SE_02_091300110 chr6:112182874-112310566 Sample_02_0913 Heart left ventricle_DCM_LV1304 110 40 3286 265 17 382 675 LAMA4,LOC101927640,RFPL4B
SE_02_090700107 chr6:112182960-112310606 Sample_02_0907 Heart left ventricle_DCM_LV1223 107 48 3283 264 17 382 675 LAMA4,LOC101927640,RFPL4B
SE_01_009100176 chr6:112187436-112311017 Sample_01_0091 Uterus uterus 176 16 3170 246 17 382 611 LAMA4,RFPL4B
SE_01_008900176 chr6:112188388-112299576 Sample_01_0089 Transverse colon transverse-colon 176 11 2816 226 12 343 576 LAMA4,RFPL4B
SE_02_031400524 chr6:112188971-112238612 Sample_02_0314 Neuroblastoma SK-N-FI 524 8 1308 133 5 166 300 LAMA4
SE_02_090600153 chr6:112193065-112310757 Sample_02_0906 Heart left ventricle_DCM_LV1072 153 38 3022 232 17 339 448 LAMA4,LOC101927640,RFPL4B
SE_02_091800067 chr6:112193542-112298654 Sample_02_0918 Heart left ventricle_DCM_LV1437 67 35 2659 211 12 318 448 LAMA4,LOC101927640,RFPL4B
SE_02_092000087 chr6:112193653-112298608 Sample_02_0920 Heart left ventricle_DCM_LV1535 87 34 2653 209 12 318 448 LAMA4,LOC101927640,RFPL4B
SE_01_009000253 chr6:112194446-112283165 Sample_01_0090 Lung upper-lobe-of-left-lung 253 13 2213 190 9 267 448 LAMA4
SE_02_091100166 chr6:112194564-112298548 Sample_02_0911 Heart left ventricle_DCM_LV1290 166 40 2637 207 12 312 448 LAMA4,LOC101927640,RFPL4B
SE_02_029800438 chr6:112195932-112219186 Sample_02_0298 Neuroblastoma CLB-GA 438 4 644 81 4 50 186 LAMA4
SE_02_089900106 chr6:112196603-112299153 Sample_02_0899 Heart left ventricle_LV1400 106 37 2605 195 12 310 448 LAMA4,LOC101927640,RFPL4B
SE_02_088800169 chr6:112197589-112299513 Sample_02_0888 Heart left ventricle_LV1160 169 41 2589 191 12 310 448 LAMA4,LOC101927640,RFPL4B
SE_00_005200330 chr6:112198034-112299161 Sample_00_0052 Heart left ventricle 3y 330 40 2573 191 12 310 448 LAMA4,LOC101927640,RFPL4B
SE_02_010700079 chr6:112200975-112283274 Sample_02_0107 Endometrium EEC16 79 7 2058 161 9 260 448 LAMA4
SE_01_001800050 chr6:112201017-112255786 Sample_01_0018 Submandibular Salivary Gland ACC112 50 6 1387 111 6 193 415 LAMA4
SE_02_011100104 chr6:112201082-112255466 Sample_02_0111 Ovaries IOE4 104 9 1379 110 6 193 415 LAMA4
SE_02_026300131 chr6:112201417-112255437 Sample_02_0263 Osteoblastic hFOB_undifferentiated 131 9 1369 109 6 193 411 LAMA4
SE_02_026200051 chr6:112201480-112255508 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 51 6 1370 109 6 193 403 LAMA4
SE_02_011000161 chr6:112201538-112283377 Sample_02_0110 Ovaries IOE11 161 8 2048 160 9 260 426 LAMA4
SE_02_030500179 chr6:112201610-112255405 Sample_02_0305 Neuroblastoma SH-EP 179 5 1364 109 6 192 387 LAMA4
SE_01_005900306 chr6:112201674-112219039 Sample_01_0059 Lung PC-9 306 2 502 57 4 42 153 LAMA4
SE_02_017200593 chr6:112201726-112255527 Sample_02_0172 Lung IMR-90_quiescent 593 7 1361 108 6 190 379 LAMA4
SE_01_008500531 chr6:112201764-112255540 Sample_01_0085 Stomach stomach 531 7 1360 108 6 190 376 LAMA4
SE_02_017300294 chr6:112201785-112252589 Sample_02_0173 Lung IMR-90_senescent 294 10 1296 108 6 159 143 LAMA4
SE_02_024300133 chr6:112201829-112255416 Sample_02_0243 Foreskin foreskin_HFFs 133 5 1357 108 6 189 370 LAMA4
SE_02_007300332 chr6:112201843-112255279 Sample_02_0073 Other 90-8TL_DMSO 332 12 1356 108 6 188 367 LAMA4
SE_02_017100548 chr6:112201958-112255134 Sample_02_0171 Lung IMR-90_proliferating 548 8 1347 108 6 186 363 LAMA4
SE_01_005600117 chr6:112201999-112255599 Sample_01_0056 Bone osteoblast 117 6 1359 108 6 190 363 LAMA4
SE_02_017500309 chr6:112202016-112251851 Sample_02_0175 Lung IMR-90_Etoposide 309 19 1277 106 5 158 134 LAMA4
SE_01_001900329 chr6:112202032-112252724 Sample_01_0019 Brain and spinal cord astrocyte 329 7 1294 108 6 162 134 LAMA4
SE_02_001000841 chr6:112202143-112224361 Sample_02_0010 Kidney A-498_emptyvector 841 3 638 67 5 69 134 LAMA4
SE_02_021000240 chr6:112202191-112246307 Sample_02_0210 Lung MRC-5_N_1DPT 240 9 1150 99 5 142 134 LAMA4
SE_01_007500471 chr6:112202230-112255333 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 471 14 1349 107 6 187 363 LAMA4
SE_01_002600003 chr6:112202266-112255328 Sample_01_0026 Umbilical vein endothelial-cell-of-umbilical-vein 3 6 1348 107 6 187 363 LAMA4
SE_02_020900291 chr6:112202299-112255279 Sample_02_0209 Lung MRC-5_MRC5_1DPT 291 13 1347 107 6 187 363 LAMA4
SE_02_001100838 chr6:112202333-112238200 Sample_02_0011 Kidney A-498_wtVHL 838 11 977 87 5 123 134 LAMA4
SE_01_007200673 chr6:112202368-112255484 Sample_01_0072 Breast epithelium breast-epithelium 673 13 1347 105 6 189 363 LAMA4
SE_02_024400173 chr6:112202383-112255056 Sample_02_0244 Foreskin foreskin_D11 173 8 1337 105 6 183 363 LAMA4
SE_02_027400732 chr6:112202397-112238580 Sample_02_0274 Endometriosis hTERT_KD 732 5 986 86 5 123 134 LAMA4
SE_02_006200015 chr6:112202733-112238569 Sample_02_0062 Adipose hMADS-3_brite 15 6 974 80 5 123 134 LAMA4
SE_02_089300168 chr6:112202754-112298145 Sample_02_0893 Heart left ventricle_LV1226 168 33 2422 168 12 294 396 LAMA4,LOC101927640,RFPL4B
SE_02_081600365 chr6:112203017-112299932 Sample_02_0816 Ovary Clear cell ovarian cancer 365 37 2471 168 12 297 396 LAMA4,LOC101927640,RFPL4B
SE_01_008100611 chr6:112203089-112299957 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 611 12 2471 167 11 296 396 LAMA4,RFPL4B
SE_02_009300659 chr6:112203333-112238501 Sample_02_0093 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_6 659 5 958 77 4 118 134 LAMA4
SE_02_008900461 chr6:112203586-112234917 Sample_02_0089 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_3 461 5 857 69 4 101 134 LAMA4
SE_02_091700183 chr6:112203714-112298720 Sample_02_0917 Heart left ventricle_DCM_LV1433 183 28 2418 165 11 294 396 LAMA4,LOC101927640,RFPL4B
SE_02_092100410 chr6:112213867-112298456 Sample_02_0921 Heart embryonic heart_CS22 410 22 2117 128 9 279 325 LAMA4,LOC101927640,RFPL4B
SE_02_092300290 chr6:112214533-112298646 Sample_02_0923 Heart fetal heart_PCW10_12522 290 23 2110 126 9 280 296 LAMA4,LOC101927640,RFPL4B
SE_02_091900159 chr6:112214601-112298855 Sample_02_0919 Heart left ventricle_DCM_LV1532 159 34 2116 126 9 280 296 LAMA4,LOC101927640,RFPL4B
SE_00_004600609 chr6:112214819-112279209 Sample_00_0046 Heart right ventricle_34y 609 19 1575 105 6 224 296 LAMA4,LOC101927640
SE_02_041200093 chr6:112216006-112339508 Sample_02_0412 Liver TTC549_Doxycycline 93 18 3187 168 18 368 296 LAMA4,RFPL4B
SE_01_009800458 chr6:112216673-112289775 Sample_01_0098 Heart left ventricle_51y 458 23 1773 111 6 252 262 LAMA4,LOC101927640,RFPL4B
SE_02_009000237 chr6:112216927-112238495 Sample_02_0090 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_6 237 5 557 36 1 88 0 LAMA4
SE_00_002100248 chr6:112218000-112290024 Sample_00_0021 Lung lung_3y 248 14 1739 108 6 247 262 LAMA4,LAA4,RFPL4B
SE_00_003400729 chr6:112218368-112269352 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 729 9 1252 81 4 185 229 LAMA4
SE_00_001500583 chr6:112221025-112252344 Sample_00_0015 Lung IMR-90 583 6 736 47 2 110 0 LAMA4
SE_02_006100149 chr6:112221362-112224366 Sample_02_0061 Adipose hMADS-3_white 149 3 80 5 1 20 0 LAMA4
SE_00_004100886 chr6:112221991-112251357 Sample_00_0041 Stomach stomach_3y 886 9 686 44 1 101 0 LAMA4
SE_00_002600285 chr6:112222042-112260243 Sample_00_0026 Muscle of trunk muscle-of-trunk 285 7 902 56 4 156 229 LAMA4
SE_00_004300616 chr6:112222137-112255731 Sample_00_0043 Stomach stomach_96d 616 7 779 46 2 139 229 LAMA4
SE_02_074701069 chr6:112231963-112261817 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 1069 6 698 42 3 121 229 LAMA4,LOC101927640
SE_02_038200801 chr6:112249801-112263529 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 801 1 331 21 3 64 229 LAMA4
SE_00_003800413 chr6:112250140-112256058 Sample_00_0038 Spinal cord spinal-cord_108d 413 1 124 5 1 43 229 LAMA4
SE_02_098200346 chr6:112251599-112255059 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 346 2 76 2 1 29 229 LAMA4,LOC101927640
SE_02_097300384 chr6:112252019-112256163 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 384 1 93 3 1 32 229 LAMA4,LOC101927640
SE_02_098300201 chr6:112252196-112255075 Sample_02_0983 Brain H3.3K27M_BT245-C1P5 201 1 63 1 0 26 229 LAMA4,LOC101927640
SE_02_098000208 chr6:112252196-112255076 Sample_02_0980 Brain BT245 208 1 63 1 0 26 229 LAMA4,LOC101927640
SE_02_074601107 chr6:112256997-112261747 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 1107 2 131 11 2 15 0 LOC101927640,LAMA4
SE_02_021000124 chr6:112261125-112312831 Sample_02_0210 Lung MRC-5_N_1DPT 124 12 1367 78 9 130 33 LAMA4,RFPL4B
SE_02_058600586 chr6:112268318-112331217 Sample_02_0586 Chordal patient-derived chordoma MGH_4 586 23 1657 78 12 154 33 LOC101927640,RFPL4B,LAMA4
SE_02_127800200 chr6:112268334-112322646 Sample_02_1278 Chordoma UCH1_DMSO_48h 200 15 1404 68 10 136 33 LOC101927640,RFPL4B,LAMA4
SE_02_155200475 chr6:112268523-112333438 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 475 16 1715 80 13 163 33 LOC101927640,RFPL4B,LAMA4
SE_02_084000813 chr6:112277922-112305203 Sample_02_0840 Embryo hNPCs_R1159Q/+ 813 9 740 33 5 62 0 LOC101927640,RFPL4B,LAMA4
SE_02_145201273 chr6:112279504-112301290 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 1273 7 604 24 4 57 0 LOC101927640,RFPL4B,LAMA4
SE_02_083900883 chr6:112279555-112300619 Sample_02_0839 Embryo hNPCs_K755R/+ 883 8 577 23 3 56 0 LOC101927640,RFPL4B,LAMA4
SE_02_055600169 chr6:112279644-112312456 Sample_02_0556 iPSCs BOFS hiPSC cl1 169 10 905 40 8 89 0 LOC101927640,RFPL4B,LAMA4
SE_01_005900135 chr6:112281478-112302451 Sample_01_0059 Lung PC-9 135 2 591 23 4 49 0 LAMA4,RFPL4B
SE_02_141500818 chr6:112281837-112312568 Sample_02_1415 Brain DIPGIV 818 7 857 39 8 83 0 LOC101927640,RFPL4B,LAMA4
SE_02_092900605 chr6:112282923-112317128 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 605 17 954 42 9 90 0 LOC101927640,RFPL4B,LAMA4
SE_01_005601144 chr6:112288441-112301398 Sample_01_0056 Bone osteoblast 1144 2 388 17 3 15 0 LAMA4,RFPL4B
SE_01_001800741 chr6:112288684-112301590 Sample_01_0018 Submandibular Salivary Gland ACC112 741 3 388 17 3 15 0 LAMA4,RFPL4B
Genomic distribution of SEs associated with LAMA4
Genome Browser

The strength of the tissue affected by the gene

Expression of LAMA4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)