Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_006200044 chr1:109378937-109394928 15991 44 6 379 26 1 52 87 SORT1,PSMA5
SE_02_006200141 chr1:118963895-118987296 23401 141 3 622 48 2 143 0 TBX15
SE_02_006200012 chr1:120013398-120021027 7629 12 1 166 6 0 52 0 NOTCH2
SE_02_006200013 chr1:146172916-146179834 6918 13 1 23 3 0 52 0 NOTCH2NL,NBPF10
SE_02_006200142 chr1:155980601-155984475 3874 142 2 94 5 0 31 139 KIAA0907,ARHGEF2,SSR2,RXFP4
SE_02_006200138 chr1:165631443-165638492 7049 138 4 166 28 0 36 5 MGST3,LOC400794
SE_02_006200099 chr1:201456511-201468439 11928 99 2 367 24 2 38 386 PHLDA3,CSRP1,TNNI1
SE_02_006200157 chr1:201703195-201715123 11928 157 2 325 19 0 68 100 NAV1
SE_02_006200031 chr1:209669962-209677262 7300 31 4 164 13 0 41 264 G0S2,MIR4260,LAMB3,HSD11B1
SE_02_006200122 chr1:212254683-212261789 7106 122 2 180 31 3 39 0 PPP2R5A
SE_02_006200090 chr1:23368390-23372111 3721 90 1 105 4 1 42 598 C1ORF213,ZNF436,HNRNPR
SE_02_006200116 chr1:234606562-234613725 7163 116 2 205 9 0 0 595 IRF2BP2,NCRNA00184
SE_02_006200136 chr1:26785946-26800720 14774 136 2 340 14 0 142 691 PIGV,ZDHHC18
SE_02_006200054 chr1:50969647-50981626 11979 54 4 248 10 1 133 268 CDKN2C,FAF1
SE_02_006200130 chr1:55204435-55214763 10328 130 2 265 14 2 18 46 USP24
SE_02_006200066 chr1:8396816-8421348 24532 66 3 674 32 6 33 0 RERE
SE_02_006200085 chr1:86702013-86715250 13237 85 3 325 20 0 28 205 SH3GLB1
SE_02_006200014 chr1:99645872-99685641 39769 14 7 1134 40 0 165 156 PALMD,MIR548D1,MIR548AA1
SE_02_006200032 chr10:100333607-100350541 16934 32 4 451 39 1 21 343 SCD,NCRNA00263,BLOC1S2,PKD2L1
SE_02_006200048 chr10:112210575-112228331 17756 48 3 479 23 2 36 0 GPAM
SE_02_006200097 chr10:4942154-4948939 6785 97 3 242 23 1 0 0 AKR1C1,TAKR
SE_02_006200104 chr10:62049011-62060317 11306 104 2 247 11 0 153 259 ARID5B
SE_02_006200121 chr10:95382761-95389919 7158 121 2 175 5 0 13 274 SORBS1,PDLIM1
SE_02_006200046 chr10:95406070-95423805 17735 46 3 435 14 0 100 546 SORBS1,PDLIM1
SE_02_006200086 chr11:10306307-10318940 12633 86 2 262 32 5 96 230 ADM,SBF2
SE_02_006200004 chr11:111818393-111848009 29616 4 7 723 34 2 46 237 ALG9,FDXACB1,C11ORF1
SE_02_006200040 chr11:14534639-14544073 9434 40 2 183 6 1 32 0 PSMA1,COPB1
SE_02_006200173 chr11:14583563-14587693 4130 173 2 110 1 0 9 0 PSMA1
SE_02_006200082 chr11:14644290-14649907 5617 82 2 145 3 1 54 197 PDE3B,PSMA1
SE_02_006200059 chr11:61964923-61973253 8330 59 3 198 15 1 57 606 FTH1,RAB3IL1,BEST1
SE_02_006200010 chr11:63488270-63511706 23436 10 3 598 32 0 37 993 LGALS12,HRASLS5,RARRES3
SE_02_006200011 chr11:65418177-65428855 10678 11 2 316 9 1 36 916 NEAT1,FRMD8,SLC25A45,MIR612
SE_02_006200001 chr11:65476297-65507625 31328 1 8 932 87 4 44 963 MALAT1,MIR612,SCYL1
SE_02_006200172 chr11:76129483-76133692 4209 172 2 100 1 0 46 0 UVRAG,WNT11
SE_02_006200077 chr12:108722821-108730835 8014 77 2 188 14 1 46 101 CORO1C
SE_02_006200007 chr12:109114672-109149680 35008 7 6 908 131 2 38 269 ACACB,UNG,ALKBH2
SE_02_006200078 chr12:110554894-110575554 20660 78 4 520 29 1 14 0 PPTC7,TCTN1
SE_02_006200103 chr12:122700267-122716160 15893 103 2 481 86 0 67 546 GPR109B,GPR109A,GPR81,DENR
SE_02_006200133 chr12:124913961-124918333 4372 133 2 188 9 1 15 323 UBC,SCARB1
SE_02_006200171 chr12:15855121-15862962 7841 171 3 181 8 0 8 0 DERA,STRAP
SE_02_006200071 chr12:16346994-16351692 4698 71 2 141 8 0 12 158 MGST1
SE_02_006200155 chr12:18749930-18754327 4397 155 2 124 3 0 10 0 CAPZA3,PLCZ1,PLEKHA5
SE_02_006200064 chr12:39580082-39599002 18920 64 6 482 29 1 20 33 ABCD2,C12ORF40
SE_02_006200038 chr12:45204113-45220345 16232 38 3 420 27 0 4 184 ANO6,PLEKHA9,RNY5
SE_02_006200069 chr12:50101480-50109998 8518 69 3 218 8 0 74 931 GPD1,ACCN2,SMARCD1,C12ORF62
SE_02_006200162 chr12:50220003-50223130 3127 162 1 58 2 0 32 97 LIMA1,MIR1293
SE_02_006200131 chr12:50239989-50243849 3860 131 1 96 5 0 14 0 LIMA1,MIR1293
SE_02_006200055 chr12:54021651-54032023 10372 55 4 275 23 1 263 453 HOXC6,HOXC5,HOXC4,MIR196A2,HOXC9,MIR615,HOXC10,LOC100240735,HOXC8,HOXC11,FLJ12825
SE_02_006200074 chr12:56292892-56300405 7513 74 2 178 16 0 24 175 CS,CNPY2,COQ10A,IL23A,PAN2,ANKRD52
SE_02_006200113 chr12:57134849-57153160 18311 113 5 487 33 7 135 703 LRP1,NAB2,STAT6,MIR1228
SE_02_006200146 chr12:6335077-6342436 7359 146 3 237 20 7 45 166 TNFRSF1A,PLEKHG6,SCNN1A,LTBR
SE_02_006200028 chr12:72268737-72277814 9077 28 2 200 9 0 120 464 LOC283392,TRHDE
SE_02_006200144 chr12:89075385-89089888 14503 144 3 427 5 4 63 0 DUSP6
SE_02_006200068 chr12:89208185-89219217 11032 68 2 262 9 1 30 0 DUSP6
SE_02_006200062 chr12:89345925-89352570 6645 62 3 182 25 0 109 460 DUSP6
SE_02_006200114 chr13:33638476-33645759 7283 114 3 187 9 1 10 0 RFC3
SE_02_006200093 chr13:40437422-40442011 4589 93 2 127 0 1 7 0 LOC646982,FLJ42392
SE_02_006200147 chr14:104576468-104582037 5569 147 2 217 8 0 8 167 C14ORF180,TMEM179
SE_02_006200102 chr14:34545834-34557268 11434 102 2 226 20 0 3 0 EAPP
SE_02_006200034 chr14:52863174-52889694 26520 34 5 699 17 0 77 263 FERMT2
SE_02_006200061 chr14:69041760-69051178 9418 61 2 251 13 0 17 36 DCAF5,ACTN1
SE_02_006200095 chr15:25890053-25903658 13605 95 2 424 10 3 20 87 ATP10A
SE_02_006200149 chr15:43462395-43466404 4009 149 1 92 10 0 3 0 TP53BP1
SE_02_006200118 chr15:77059540-77065219 5679 118 3 120 7 0 9 0 TSPAN3
SE_02_006200164 chr15:85776998-85780847 3849 164 1 123 13 1 2 0 KLHL25,MIR1276
SE_02_006200009 chr15:89662549-89688589 26040 9 4 781 47 2 126 1553 PEX11A,PLIN1,KIF7,WDR93
SE_02_006200125 chr15:92803448-92832854 29406 125 4 903 18 0 46 0 LOC100507217,ASB9P1
SE_02_006200120 chr16:20905511-20919726 14215 120 3 347 26 0 43 103 LYRM1,DCUN1D3
SE_02_006200154 chr16:68264725-68288787 24062 154 4 519 60 4 60 504 SLC7A6,PRMT7,ESRP2,PLA2G15,SLC7A6OS
SE_02_006200088 chr16:77273144-77277672 4528 88 1 166 27 2 8 0 SYCE1L
SE_02_006200084 chr17:21161109-21168656 7547 84 3 183 6 0 3 104 DHRS7B,TMEM11
SE_02_006200051 chr17:31559801-31569899 10098 51 3 301 23 0 70 198 MIR193A,MIR365-2
SE_02_006200110 chr17:40548457-40553708 5251 110 2 170 2 0 26 20 CCR7,TNS4
SE_02_006200094 chr17:42846407-42853572 7165 94 2 242 8 1 76 901 AOC2,AOC3,PSME3,CNTD1,BECN1,LOC90586,CCDC56,G6PC,LOC388387
SE_02_006200042 chr17:55410561-55446115 35554 42 6 910 46 7 109 323 MMD
SE_02_006200111 chr17:59837927-59847322 9395 111 2 218 12 0 62 211 MIR21,TMEM49,RPS6KB1,TUBD1
SE_02_006200106 chr17:77319148-77324666 5518 106 2 195 9 1 31 252 SEPT9,9-SEP
SE_02_006200052 chr18:74233828-74253546 19718 52 4 560 56 3 9 25 CYB5A
SE_02_006200029 chr19:33278782-33301646 22864 29 6 684 41 2 225 394 CEBPA,LOC80054
SE_02_006200129 chr19:40822951-40834513 11562 129 3 368 31 3 11 0 CYP2A6,CYP2A7,MIA,EGLN2,RAB4B
SE_02_006200070 chr19:42409211-42422871 13660 70 5 373 32 0 33 202 LIPE,CNFN,CXCL17
SE_02_006200006 chr2:144504241-144531098 26857 6 9 510 5 1 681 897 ZEB2
SE_02_006200003 chr2:153222302-153222519 217 3 1 4 0 0 0 0 RPRM,ARL6IP6
SE_02_006200115 chr2:163208518-163214844 6326 115 3 148 0 1 24 0 KCNH7
SE_02_006200127 chr2:1729061-1732709 3648 127 1 115 16 0 0 0 PXDN
SE_02_006200166 chr2:177805261-177810133 4872 166 4 111 14 0 0 0 PDE11A
SE_02_006200039 chr2:188975786-188984021 8235 39 1 186 5 0 21 30 COL3A1,MIR1245,MIR3606
SE_02_006200083 chr2:191945218-191952963 7745 83 2 185 0 0 33 115 TMEFF2,SDPR
SE_02_006200160 chr2:192124098-192128840 4742 160 2 126 1 1 29 0 TMEFF2
SE_02_006200148 chr2:226190569-226201787 11218 148 2 337 43 1 34 0 IRS1
SE_02_006200033 chr2:26238373-26256582 18209 33 3 497 46 0 42 303 HADHA,HADHB
SE_02_006200037 chr2:32916211-32916778 567 37 1 0 0 0 0 0 LOC285045,LTBP1,LOC100271832
SE_02_006200098 chr2:54225582-54230861 5279 98 3 131 11 0 34 0 ACYP2,TSPYL6
SE_02_006200021 chr2:55096605-55121140 24535 21 4 750 90 4 42 0 RTN4
SE_02_006200081 chr2:62696976-62704142 7166 81 2 124 9 0 17 0 EHBP1
SE_02_006200073 chr2:69479659-69492446 12787 73 4 327 16 2 16 111 AAK1,NFU1,SNORA36C
SE_02_006200135 chr2:74707099-74713933 6834 135 2 165 12 1 2 0 SEMA4F
SE_02_006200169 chr2:85356222-85384068 27846 169 3 712 82 1 40 603 ELMOD3,CAPG,RETSAT,TGOLN2
SE_02_006200056 chr20:24984030-24990898 6868 56 4 181 25 0 17 22 C20ORF3,CST7
SE_02_006200043 chr20:47354188-47361501 7313 43 2 182 2 3 85 210 ZMYND8,LOC100131496
SE_02_006200163 chr20:51749361-51764957 15596 163 4 522 49 0 0 0 ATP9A,SALL4
SE_02_006200145 chr20:53588649-53595845 7196 145 3 160 3 1 66 174 ZNF217
SE_02_006200167 chr21:16532446-16537787 5341 167 2 134 0 0 93 35 C21ORF34,MIR99A,MIRLET7C
SE_02_006200045 chr21:34835061-34846044 10983 45 2 328 9 4 38 0 RUNX1
SE_02_006200128 chr22:46068942-46081166 12224 128 3 356 10 1 78 0 LOC400931,C22ORF26,MIRLET7A3,MIR3619,LOC100271722,LOC150381,MIRLET7B
SE_02_006200156 chr3:12317051-12326835 9784 156 3 239 23 2 38 0 PPARG
SE_02_006200047 chr3:12349258-12354625 5367 47 1 129 11 3 45 50 PPARG
SE_02_006200058 chr3:123632595-123654549 21954 58 4 596 33 8 76 442 MYLK,PTPLB
SE_02_006200143 chr3:155064117-155066823 2706 143 1 68 3 0 0 0 MME
SE_02_006200139 chr3:155079854-155083194 3340 139 1 92 4 0 45 156 MME
SE_02_006200079 chr3:15604808-15611274 6466 79 3 188 15 1 12 0 BTD,HACL1
SE_02_006200027 chr3:186825648-186847566 21918 27 5 596 50 8 17 147 ADIPOQ,EIF4A2,RFC4,SNORD2,SNORA4,SNORA63,MIR1248,SNORA81
SE_02_006200091 chr3:187737898-187746607 8709 91 3 550 13 3 163 103 BCL6,RTP2,LOC100131635
SE_02_006200036 chr3:49217848-49261882 44034 36 8 1080 63 1 25 664 CCDC36,MIR4271,KLHDC8B,LOC646498,C3ORF62
SE_02_006200080 chr3:81742923-81761444 18521 80 3 468 17 2 76 107 GBE1
SE_02_006200159 chr4:123398706-123401548 2842 159 1 87 0 0 5 134 SPRY1
SE_02_006200109 chr4:178146694-178163064 16370 109 2 462 23 0 16 0 LOC285501,AGA
SE_02_006200016 chr4:184802827-184825445 22618 16 3 687 49 5 92 310 ACSL1,SLED1,MIR3945
SE_02_006200019 chr4:184859043-184898544 39501 19 6 1368 39 6 42 404 MIR3945,ACSL1
SE_02_006200017 chr4:39406397-39417373 10976 17 3 246 22 1 33 125 KLB,LIAS,RPL9,RFC1
SE_02_006200041 chr5:143392088-143402630 10542 41 5 247 3 0 84 197 NR3C1
SE_02_006200060 chr5:150779847-150791842 11995 60 2 290 46 0 31 0 C5ORF62,DCTN4
SE_02_006200112 chr5:151683212-151687654 4442 112 1 113 3 0 16 343 SPARC
SE_02_006200117 chr5:178737927-178742180 4253 117 1 134 19 0 0 0 AACSP1,ZNF354A
SE_02_006200124 chr5:40990130-40994394 4264 124 2 119 3 0 4 0 HEATR7B2
SE_02_006200152 chr5:42235493-42244293 8800 152 2 245 13 1 8 0 GHR
SE_02_006200075 chr5:57405441-57413176 7735 75 2 213 8 0 0 0 ACTBL2,GPBP1
SE_02_006200134 chr5:73433238-73446609 13371 134 2 294 18 0 169 26 FOXD1
SE_02_006200050 chr5:96853143-96858694 5551 50 2 176 30 0 0 0 ERAP1,ERAP2
SE_02_006200107 chr5:97265876-97273841 7965 107 3 212 26 0 4 0 RIOK2
SE_02_006200100 chr6:104600801-104609044 8243 100 3 178 1 0 72 0 HACE1
SE_02_006200008 chr6:111575628-111606582 30954 8 5 776 116 6 140 1065 TRAF3IP2,LOC643749
SE_02_006200015 chr6:112202733-112238569 35836 15 6 974 80 5 123 134 LAMA4
SE_02_006200065 chr6:127340984-127348260 7276 65 2 186 9 0 5 166 ECHDC1
SE_02_006200168 chr6:128639411-128643046 3635 168 2 100 10 0 12 0 PTPRK
SE_02_006200105 chr6:133621226-133637732 16506 105 2 443 15 1 34 0 MGC34034
SE_02_006200170 chr6:163392013-163399094 7081 170 2 141 7 1 15 0 QKI,DKFZP451B082,LOC100526820
SE_02_006200119 chr6:30614226-30618628 4402 119 2 127 5 0 67 285 PPP1R10,MRPS18B,ABCF1,ATAT1,MIR877,C6ORF136
SE_02_006200089 chr6:32967718-32972038 4320 89 1 146 28 3 96 591 BRD2,HLA-DMA,HLA-DOA,HLA-DMB
SE_02_006200150 chr6:53320811-53323700 2889 150 2 74 7 0 10 0 ELOVL5
SE_02_006200126 chr6:53460097-53466575 6478 126 4 192 10 1 5 0 GCLC
SE_02_006200123 chr7:106355227-106365868 10641 123 4 314 6 1 17 0 NAMPT
SE_02_006200087 chr7:113699844-113706597 6753 87 3 181 2 0 5 0 PPP1R3A
SE_02_006200165 chr7:116258599-116272881 14282 165 3 375 74 0 38 22 TES
SE_02_006200140 chr7:116492421-116501448 9027 140 3 250 45 3 42 470 CAV2,CAV1
SE_02_006200035 chr7:128446579-128455783 9204 35 3 200 33 0 8 27 IMPDH1,METTL2B,C7ORF68
SE_02_006200072 chr7:27167376-27179914 12538 72 2 343 13 0 232 895 MIR196B,HOXA10,HOXA6,HOXA11-AS1,HOXA11,HOXA3,HOXA5,HOXA7,HOXA4,HOXA9,HOXA13
SE_02_006200025 chr7:64997715-65006687 8972 25 3 246 29 0 0 288 ERV3,ZNF117,CCT6P3
SE_02_006200023 chr7:65020837-65041616 20779 23 5 625 110 0 0 196 CCT6P3,ERV3,ZNF117
SE_02_006200030 chr7:65857606-65876265 18659 30 4 440 53 1 54 226 VKORC1L1
SE_02_006200137 chr7:75907373-75934679 27306 137 3 794 57 0 1 158 POR,RHBDD2,SNORA14A
SE_02_006200053 chr7:76318689-76341413 22724 53 5 624 55 4 66 435 YWHAG,HSPB1
SE_02_006200101 chr7:80487891-80500196 12305 101 2 364 18 1 23 51 GNAT3
SE_02_006200018 chr7:80530083-80553054 22971 18 6 624 66 2 0 61 GNAT3,CD36
SE_02_006200005 chr7:80632448-80660555 28107 5 4 763 59 23 63 179 CD36
SE_02_006200063 chr7:8205731-8214771 9040 63 3 302 9 0 77 0 ICA1
SE_02_006200076 chr8:13357666-13368495 10829 76 2 490 51 0 37 0 DLC1
SE_02_006200132 chr8:13444509-13459661 15152 132 2 590 10 1 41 0 DLC1
SE_02_006200108 chr8:134515562-134530681 15119 108 5 406 33 4 31 46 ZFAT,ZFAT-AS1
SE_02_006200092 chr8:19924612-19942801 18189 92 3 642 17 6 56 163 LPL
SE_02_006200020 chr8:58594962-58619981 25019 20 6 661 54 1 62 472 NSMAF,SDCBP
SE_02_006200067 chr8:61710701-61720121 9420 67 2 250 10 0 25 238 ASPH
SE_02_006200153 chr8:73310622-73313914 3292 153 1 82 3 0 14 214 RDH10,RPL7
SE_02_006200057 chr8:81338615-81354456 15841 57 3 461 5 1 41 0 FABP5
SE_02_006200002 chr8:81478181-81497847 19666 2 5 539 45 2 60 195 FABP4,FABP9,FABP12,PMP2
SE_02_006200161 chr9:109792442-109795585 3143 161 1 97 12 0 5 0 PALM2,PALM2-AKAP2
SE_02_006200151 chr9:114386653-114398203 11550 151 2 290 25 0 46 156 AKNA
SE_02_006200049 chr9:19119261-19127382 8121 49 3 228 16 0 26 311 PLIN2,HAUS6
SE_02_006200096 chr9:22648775-22659014 10239 96 4 306 7 0 63 0 DMRTA1
SE_02_006200024 chr9:682707-695342 12635 24 3 440 48 4 41 175 KANK1
SE_02_006200158 chr9:91418119-91429291 11172 158 3 240 25 2 160 187 NFIL3
SE_02_006200026 chr9:98906316-98920931 14615 26 3 428 14 2 55 0 COL15A1

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM1443806
Input ID: Name:GSM1443818
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb