SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000136636
Gene: KCTD3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:215567304-215621807 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_146400348 chr1:215376473-215401609 Sample_02_1464 Ovary CAOV4 348 7 753 8 1 3 0 KCTD3
SE_02_108700224 chr1:215380875-215433402 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 224 11 1525 26 1 33 0 KCTD3
SE_02_109300131 chr1:215392550-215433411 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 131 15 1205 23 1 33 0 KCTD3
SE_02_108800080 chr1:215392611-215433409 Sample_02_1088 Mammary gland T47D_shCtrl_45min 80 17 1205 23 1 33 0 KCTD3
SE_02_108600483 chr1:215392822-215403968 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 483 6 338 7 1 0 0 KCTD3
SE_02_039400099 chr1:215392915-215427427 Sample_02_0394 Mammary gland T-47D_2 99 5 1031 21 1 33 0 KCTD3
SE_02_109000323 chr1:215393244-215403668 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 323 5 311 7 1 0 0 KCTD3
SE_02_053200051 chr1:215393366-215431697 Sample_02_0532 Mammary gland T47D 51 16 1117 22 1 33 0 KCTD3
SE_02_109100343 chr1:215393421-215403816 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 343 5 313 7 1 0 0 KCTD3
SE_02_109200139 chr1:215393425-215433237 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 139 13 1164 22 1 33 0 KCTD3
SE_02_123400254 chr1:215394729-215428878 Sample_02_1234 Mammary gland T47D_Full 254 16 986 21 1 33 0 KCTD3
SE_02_039400021 chr1:215447488-215541630 Sample_02_0394 Mammary gland T-47D_2 21 20 2447 22 2 57 0 KCTD3
SE_02_053200010 chr1:215450024-215543492 Sample_02_0532 Mammary gland T47D 10 39 2428 21 2 58 0 KCTD3
SE_02_108700011 chr1:215461848-215540727 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 11 14 2060 16 1 40 0 KCTD3
SE_02_146400018 chr1:215462335-215541444 Sample_02_1464 Ovary CAOV4 18 24 2061 16 1 38 0 KCTD3
SE_02_123400011 chr1:215469090-215543277 Sample_02_1234 Mammary gland T47D_Full 11 24 1959 14 1 39 0 KCTD3
SE_02_108800005 chr1:215469524-215541241 Sample_02_1088 Mammary gland T47D_shCtrl_45min 5 12 1896 14 1 38 0 KCTD3
SE_02_007900120 chr1:215469564-215491501 Sample_02_0079 Mammary gland T-47D_1 120 9 621 6 1 15 0 KCTD3
SE_02_109300014 chr1:215469599-215540930 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 14 15 1890 14 1 38 0 KCTD3
SE_02_108600046 chr1:215469690-215494504 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 46 7 691 6 1 18 0 KCTD3
SE_02_108900034 chr1:215469693-215494544 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 34 5 691 6 1 18 0 KCTD3
SE_02_109200021 chr1:215469715-215541029 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 21 15 1888 14 1 38 0 KCTD3
SE_02_109100033 chr1:215470057-215494532 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 33 15 681 6 1 18 0 KCTD3
SE_02_109000032 chr1:215470083-215494472 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 32 10 680 6 1 18 0 KCTD3
SE_02_040300081 chr1:215470603-215495223 Sample_02_0403 Mammary gland T-47D_untreat 81 2 683 6 1 19 0 KCTD3
SE_02_146500231 chr1:215471105-215502405 Sample_02_1465 Ovary CAOV4cis 231 8 847 7 1 27 0 KCTD3
SE_02_011500034 chr1:215471210-215493017 Sample_02_0115 Mammary gland MCF-7 34 1 623 6 1 15 0 KCTD3
SE_02_062400180 chr1:215472146-215491819 Sample_02_0624 Mammary gland TAMR_VEH 180 6 573 5 1 15 0 KCTD3
SE_02_062300230 chr1:215472156-215491844 Sample_02_0623 Mammary gland TAMR_E2 230 4 574 5 1 15 0 KCTD3
SE_02_108900326 chr1:215511695-215541000 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 326 7 794 6 0 8 0 KCTD3
SE_02_109100256 chr1:215511744-215524466 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 256 6 321 4 0 7 0 KCTD3
SE_02_109000193 chr1:215512048-215540716 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 193 10 777 6 0 8 0 KCTD3
SE_02_108600273 chr1:215513339-215540505 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 273 7 733 6 0 8 0 KCTD3
SE_02_154400504 chr1:215523648-215547968 Sample_02_1544 Gastrointestinal Stromal GIST-882 504 4 663 3 0 3 0 KCTD3
SE_02_043000246 chr1:215527676-215545201 Sample_02_0430 Kidney 12364284 246 5 486 2 0 1 0 KCTD3
SE_02_121900059 chr1:215529308-215576664 Sample_02_1219 Bone marrow H929 59 5 1162 8 0 20 266 KCTD3
SE_02_049400886 chr1:215557440-215571393 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 886 3 300 4 0 9 217 KCTD3
SE_02_049500570 chr1:215557873-215571475 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 570 2 292 4 0 9 217 KCTD3
SE_02_154400332 chr1:215564529-215574796 Sample_02_1544 Gastrointestinal Stromal GIST-882 332 3 215 1 0 10 244 KCTD3
SE_02_031000671 chr1:215565242-215573096 Sample_02_0310 Neuroblastoma SJNB8 671 1 158 1 0 9 217 KCTD3
SE_02_141000985 chr1:215565677-215618674 Sample_02_1410 Brain GSC6 985 9 1257 6 0 74 590 KCTD3
SE_02_070900879 chr1:215565847-215584201 Sample_02_0709 Pancreas hT85_organoid 879 3 440 2 0 25 393 KCTD3
SE_02_070300374 chr1:215566088-215583915 Sample_02_0703 Pancreas PATU8988S WT 374 2 434 2 0 25 393 KCTD3
SE_02_071800368 chr1:215566272-215573567 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 368 1 154 1 0 9 217 KCTD3
SE_02_136000693 chr1:215566347-215614920 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 693 10 1130 5 0 74 590 KCTD3
SE_02_062300322 chr1:215566444-215606613 Sample_02_0623 Mammary gland TAMR_E2 322 7 920 4 0 63 542 KCTD3
SE_02_062400350 chr1:215566457-215606704 Sample_02_0624 Mammary gland TAMR_VEH 350 7 921 4 0 63 542 KCTD3
SE_02_081900531 chr1:215566468-215584619 Sample_02_0819 Ovary Mucinous ovarian cancer 531 3 432 2 0 25 393 KCTD3
SE_02_074800958 chr1:215566501-215595296 Sample_02_0748 Mammary gland HCC1599_WO 958 5 686 4 0 42 447 KCTD3
SE_02_136201054 chr1:215566524-215614783 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 1054 10 1122 5 0 74 590 KCTD3
SE_02_103700662 chr1:215566546-215600580 Sample_02_1037 Pharynx FaDu Control 662 7 790 4 0 52 472 KCTD3
SE_02_137100789 chr1:215566547-215584269 Sample_02_1371 Pancreas Patu899S-untreated 789 3 427 2 0 25 393 KCTD3
SE_02_069400156 chr1:215566548-215570546 Sample_02_0694 Lung NCI-H82_no infection 156 1 85 1 0 9 217 KCTD3
SE_02_109200349 chr1:215566602-215583779 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 349 4 416 2 0 25 393 KCTD3
SE_02_109000163 chr1:215566613-215608349 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 163 11 955 5 0 67 569 KCTD3
SE_01_010701144 chr1:215566625-215605831 Sample_01_0107 Esophagus esophagus squamous epithelium 1144 9 908 4 0 63 542 KCTD3
SE_02_108800467 chr1:215566627-215584828 Sample_02_1088 Mammary gland T47D_shCtrl_45min 467 5 436 2 0 25 393 KCTD3
SE_02_109300377 chr1:215566642-215584063 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 377 5 423 2 0 25 393 KCTD3
SE_02_136101056 chr1:215566643-215614414 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 1056 8 1116 5 0 74 590 KCTD3
SE_02_097600437 chr1:215566670-215600530 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 437 6 786 4 0 52 472 KCTD3
SE_02_108900339 chr1:215566671-215584173 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 339 4 422 2 0 25 393 KCTD3
SE_02_117401060 chr1:215566673-215584762 Sample_02_1174 Brain GBM02 1060 6 433 2 0 25 393 KCTD3
SE_02_108600329 chr1:215566683-215583470 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 329 3 405 2 0 25 393 KCTD3
SE_02_109100312 chr1:215566685-215573243 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 312 3 140 1 0 9 217 KCTD3
SE_02_108700373 chr1:215566691-215591164 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 373 3 594 4 0 37 441 KCTD3
SE_02_135900951 chr1:215566697-215585178 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 951 4 445 2 0 25 393 KCTD3
SE_02_102500673 chr1:215566699-215584756 Sample_02_1025 Esophagus KYSE150 673 2 433 2 0 25 393 KCTD3
SE_01_011200410 chr1:215566866-215570262 Sample_01_0112 Embryonic kidney HEK293_encode 410 2 74 1 0 9 217 KCTD3
SE_02_053200050 chr1:215567730-215624807 Sample_02_0532 Mammary gland T47D 50 30 1374 7 0 99 771 USH2A,KCTD3
SE_02_071100816 chr1:215568517-215584652 Sample_02_0711 Pancreas hN35_organoid 816 3 392 1 0 18 176 KCTD3
SE_02_077000881 chr1:215568532-215618402 Sample_02_0770 Ovary OVCA429_shLuc 881 19 1189 5 0 67 373 KCTD3
SE_02_071000644 chr1:215568535-215584578 Sample_02_0710 Pancreas hN34_organoid 644 4 391 1 0 18 176 KCTD3
SE_02_139400477 chr1:215568780-215582909 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 477 4 349 1 0 17 176 KCTD3
SE_02_076700619 chr1:215568915-215599892 Sample_02_0767 Ovary OVCA429 619 21 720 3 0 44 255 KCTD3
SE_02_072100473 chr1:215569137-215607930 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 473 11 894 3 0 56 328 KCTD3
SE_02_071600667 chr1:215569935-215606393 Sample_02_0716 Pancreas SUIT2_GFP 667 10 842 3 0 54 325 KCTD3
SE_02_032700413 chr1:215600056-215661795 Sample_02_0327 Liver hepatocytes_d6 413 9 1633 13 2 154 1003 KCTD3,USH2A
SE_02_077501508 chr1:215616522-215646885 Sample_02_0775 Pancreas EndoC-BH1_SE 1508 11 839 8 0 55 653 USH2A,KCTD3
SE_02_077600531 chr1:215630887-215648453 Sample_02_0776 Pancreas EndoC-BH1 531 2 481 5 0 29 242 USH2A,KCTD3
SE_02_032500574 chr1:215631004-215661859 Sample_02_0325 Liver hepatocytes_d1 574 4 838 9 2 97 392 USH2A,KCTD3
SE_02_004800860 chr1:215634388-215647927 Sample_02_0048 Embryo endodermal CyT49_HE 860 3 382 4 0 28 218 USH2A,KCTD3
SE_02_032600797 chr1:215634614-215661766 Sample_02_0326 Liver hepatocytes_d3 797 5 739 8 2 97 346 USH2A,KCTD3
SE_02_049501021 chr1:215635311-215648292 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 1021 6 363 4 0 28 158 USH2A,KCTD3
SE_02_049500365 chr1:215774614-215796821 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 365 12 609 0 2 203 243 USH2A,KCTD3
SE_02_049401147 chr1:215775363-215796785 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1147 13 587 0 2 203 243 USH2A,KCTD3
SE_02_032200715 chr1:215860736-215880972 Sample_02_0322 Colon Caco-2 715 4 543 0 2 58 140 USH2A,KCTD3
Genomic distribution of SEs associated with KCTD3
Genome Browser

The strength of the tissue affected by the gene

Expression of KCTD3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)