| SE_02_061100007 |
chr12:53980690-54012275 |
Sample_02_0611 |
Liposarcoma |
DDLPS_T1 |
7 |
1 |
803 |
33 | 0 | 727 |
1505 |
MIR196A2,HOXC9,HOXC8,HOXC10,HOXC-AS1,HOXC-AS2,HOXC-AS3,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC13,HOXC6,HOXC13-AS,FLJ12825,HOXC5,MIR615 |
| SE_02_055300034 |
chr12:53985024-54008758 |
Sample_02_0553 |
Other |
HSSY2 shCt |
34 |
1 |
626 |
28 | 0 | 555 |
1022 |
MIR196A2,HOXC9,HOXC10,HOXC-AS1,HOXC-AS2,HOXC-AS3,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC13,HOXC6,HOXC8,HOXC13-AS,FLJ12825,HOXC5,MIR615 |
| SE_02_146200085 |
chr12:53985159-54008716 |
Sample_02_1462 |
Ovary |
A2780_shMBD3.26 |
85 |
1 |
621 |
28 | 0 | 536 |
998 |
MIR196A2,HOXC9,HOXC10,HOXC-AS1,HOXC-AS2,HOXC-AS3,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC13,HOXC6,HOXC8,HOXC13-AS,FLJ12825,HOXC5,MIR615 |
| SE_02_086400247 |
chr12:53988277-54005973 |
Sample_02_0864 |
Malignant rhaboid tumor |
TTC1240_SMARCB1_K364del |
247 |
1 |
455 |
21 | 0 | 421 |
760 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC13,HOXC6,HOXC8,HOXC13-AS,HOXC5,HOXC-AS3,MIR615 |
| SE_02_086500266 |
chr12:53988396-54006842 |
Sample_02_0865 |
Malignant rhaboid tumor |
TTC1240_SMARCB1_R377H |
266 |
1 |
472 |
22 | 0 | 441 |
760 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC13,HOXC6,HOXC8,HOXC13-AS,HOXC5,HOXC-AS3,MIR615 |
| SE_02_086600273 |
chr12:53988546-54006069 |
Sample_02_0866 |
Malignant rhaboid tumor |
TTC1240_SMARCB1_delCC |
273 |
1 |
448 |
21 | 0 | 421 |
760 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC13,HOXC6,HOXC8,HOXC13-AS,HOXC5,HOXC-AS3,MIR615 |
| SE_02_086200274 |
chr12:53989310-54007222 |
Sample_02_0862 |
Malignant rhaboid tumor |
TTC1240_SMARCB1 FL |
274 |
1 |
462 |
22 | 0 | 425 |
707 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC13-AS,MIR615,HOXC-AS3 |
| SE_02_086300304 |
chr12:53989372-54006101 |
Sample_02_0863 |
Malignant rhaboid tumor |
TTC1240_empty |
304 |
1 |
436 |
21 | 0 | 398 |
703 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC13-AS,MIR615,HOXC-AS3 |
| SE_02_067100177 |
chr12:53989478-54001441 |
Sample_02_0671 |
Mammary gland |
breast cancer_DSG |
177 |
1 |
313 |
20 | 0 | 298 |
464 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC13-AS,MIR615,HOXC-AS3 |
| SE_02_095100209 |
chr12:53989556-54002704 |
Sample_02_0951 |
HMSCs |
hMSCs |
209 |
1 |
340 |
20 | 0 | 334 |
525 |
MIR196A2,HOXC-AS2,HOXC10,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC13-AS,MIR615,HOXC-AS3 |
| SE_02_044401017 |
chr12:53990329-54003461 |
Sample_02_0444 |
Bone |
osteosarcoma tumor P10 |
1017 |
1 |
347 |
21 | 0 | 330 |
539 |
MIR196A2,HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC10,MIR615,HOXC-AS3 |
| SE_02_060500380 |
chr12:53990347-54004418 |
Sample_02_0605 |
Skin |
Skin Fibroblast_DMSO |
380 |
1 |
365 |
21 | 0 | 359 |
563 |
MIR196A2,HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC10,MIR615,HOXC-AS3,SMUG1 |
| SE_02_060600378 |
chr12:53990482-54004358 |
Sample_02_0606 |
Skin |
Skin Fibroblast_Nutlin3A |
378 |
1 |
358 |
21 | 0 | 340 |
553 |
MIR196A2,HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC10,MIR615,HOXC-AS3,SMUG1 |
| SE_02_063500160 |
chr12:53990606-53998640 |
Sample_02_0635 |
Synovial sarcoma |
HSSYII_Untreated |
160 |
1 |
200 |
12 | 0 | 147 |
102 |
MIR196A2,HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,HOXC10,MIR615,HOXC-AS3 |
| SE_02_137300187 |
chr12:53990835-53998219 |
Sample_02_1373 |
Pancreas |
PANC1-untreated |
187 |
1 |
195 |
11 | 0 | 138 |
102 |
MIR196A2,HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,HOXC10,MIR615,HOXC-AS3 |
| SE_02_146400484 |
chr12:53991348-54001407 |
Sample_02_1464 |
Ovary |
CAOV4 |
484 |
1 |
253 |
17 | 0 | 247 |
331 |
MIR196A2,HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC10,MIR615,HOXC-AS3 |
| SE_02_148000164 |
chr12:53991788-54002705 |
Sample_02_1480 |
Bone |
MHH-ES-1 |
164 |
1 |
271 |
17 | 0 | 277 |
358 |
MIR196A2,HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,HOXC10,MIR615,HOXC-AS3 |
| SE_02_067000192 |
chr12:53992851-53998734 |
Sample_02_0670 |
Mammary gland |
breast cancer FA |
192 |
1 |
134 |
9 | 0 | 102 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_069800506 |
chr12:53992851-53999472 |
Sample_02_0698 |
Lung |
NCI-H1048-cas9_sgPOU2F3 |
506 |
1 |
147 |
9 | 0 | 114 |
0 |
HOXC-AS2,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_108800398 |
chr12:53992887-54001326 |
Sample_02_1088 |
Mammary gland |
T47D_shCtrl_45min |
398 |
1 |
207 |
15 | 0 | 219 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_109100162 |
chr12:53992902-53998670 |
Sample_02_1091 |
Mammary gland |
T47D_shCtrl_shRING1B_8hr |
162 |
1 |
134 |
9 | 0 | 102 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_136500934 |
chr12:53992967-53998541 |
Sample_02_1365 |
Pancreas |
AsPC1-untreated |
934 |
1 |
132 |
8 | 0 | 102 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_124000224 |
chr12:53993017-54001320 |
Sample_02_1240 |
Skin |
MCC13_virus_negative |
224 |
1 |
204 |
15 | 0 | 219 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_069700289 |
chr12:53993035-54001767 |
Sample_02_0697 |
Lung |
NCI-H1048-cas9_sgHROSA |
289 |
1 |
220 |
15 | 0 | 237 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_070100498 |
chr12:53993130-53998026 |
Sample_02_0701 |
Bone |
David_TC32 |
498 |
1 |
124 |
7 | 0 | 96 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_078000752 |
chr12:53993132-53999223 |
Sample_02_0780 |
Liver |
SMMC-7721 |
752 |
1 |
137 |
9 | 0 | 110 |
0 |
HOXC-AS2,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_061000623 |
chr12:53993150-54001718 |
Sample_02_0610 |
Liposarcoma |
MLS 1765-92 |
623 |
1 |
215 |
15 | 0 | 236 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_155600589 |
chr12:53993151-53998845 |
Sample_02_1556 |
Gastrointestinal Stromal |
GIST-5_KIT e9 |
589 |
1 |
130 |
9 | 0 | 103 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_135500867 |
chr12:53993193-54001348 |
Sample_02_1355 |
Umbilical cord |
umbilical cord-derived mesenchymal stem cells_old |
867 |
1 |
201 |
15 | 0 | 219 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_111400043 |
chr12:53993205-54002069 |
Sample_02_1114 |
Embryonic kidney |
HEK293 |
43 |
1 |
219 |
15 | 0 | 246 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_108000335 |
chr12:53993208-53998922 |
Sample_02_1080 |
Muscle |
JR1 shCtrl |
335 |
1 |
128 |
9 | 0 | 103 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_081000344 |
chr12:53993227-53998727 |
Sample_02_0810 |
Mammary gland |
T47D noSerum |
344 |
1 |
123 |
9 | 0 | 102 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_129000396 |
chr12:53993514-54001397 |
Sample_02_1290 |
Lung |
NCI-H69_p8-15 |
396 |
1 |
191 |
14 | 0 | 214 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_128001059 |
chr12:53993936-54001133 |
Sample_02_1280 |
Bone |
Mesenchymal stem cells_SPC_mutation_ EF1 |
1059 |
1 |
174 |
11 | 0 | 195 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_088401046 |
chr12:53993961-53998978 |
Sample_02_0884 |
Colon |
LoVo |
1046 |
1 |
110 |
7 | 0 | 81 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_126900981 |
chr12:53993967-53998721 |
Sample_02_1269 |
Bone |
Im-GCT-4072_G34W-repair_WT_A4 |
981 |
1 |
106 |
7 | 0 | 80 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_058400230 |
chr12:53993973-54002487 |
Sample_02_0584 |
Lung |
H1299 WT |
230 |
1 |
208 |
13 | 0 | 233 |
275 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_127901464 |
chr12:53993996-54001493 |
Sample_02_1279 |
Bone |
Mesenchymal stem cells |
1464 |
1 |
185 |
13 | 0 | 197 |
229 |
HOXC-AS2,HOXC9,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_103602749 |
chr12:53994014-53995188 |
Sample_02_1036 |
Mammary gland |
HCC70_XY018 |
2749 |
1 |
23 |
4 | 0 | 25 |
0 |
HOXC12,HOTAIR,HOXC4,HOXC11,HOXC-AS2,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_01_010200375 |
chr12:53994021-53998715 |
Sample_01_0102 |
Artery |
tibial artery |
375 |
1 |
106 |
7 | 0 | 79 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_119800832 |
chr12:53994026-53998942 |
Sample_02_1198 |
Brain |
GBM34 |
832 |
1 |
108 |
7 | 0 | 79 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_126001079 |
chr12:53994140-53998279 |
Sample_02_1260 |
Bone |
Im-GCT-3504_G34W-repair_4F5 |
1079 |
1 |
99 |
5 | 0 | 75 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_107800424 |
chr12:53994274-53999497 |
Sample_02_1078 |
Muscle |
RMS235_PAX3-NCOA1 |
424 |
2 |
111 |
5 | 0 | 86 |
0 |
HOXC-AS2,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_02_132201480 |
chr12:53994556-53996791 |
Sample_02_1322 |
Connective Tissue |
HT1080_WT |
1480 |
1 |
59 |
3 | 0 | 53 |
0 |
HOXC-AS2,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,HOXC-AS1,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
| SE_01_011200475 |
chr12:53994814-53999462 |
Sample_01_0112 |
Embryonic kidney |
HEK293_encode |
475 |
1 |
102 |
3 | 0 | 75 |
0 |
HOXC-AS2,HOXC-AS1,HOXC12,HOTAIR,HOXC4,HOXC11,HOXC5,HOXC9,HOXC6,HOXC8,MIR196A2,HOXC10,MIR615,HOXC-AS3 |
