Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000143341
Gene: HMCN1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:185734391-186190949 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_010200670 chr1:185518579-185538076 Sample_02_0102 Peripheral blood Macrophages_GM-CSF_72h_IL4 670 2 500 19 0 50 0 HMCN1,IVNS1ABP
SE_02_019700068 chr1:185541135-185568100 Sample_02_0197 Stomach SNU1750 68 6 785 88 12 66 119 HMCN1
SE_02_042900237 chr1:185557668-185586784 Sample_02_0429 Kidney 12364284_VHL+ 237 12 902 100 14 69 119 HMCN1,IVNS1ABP
SE_01_005400354 chr1:185557674-185563709 Sample_01_0054 Haematopoietic and lymphoid tissue OCI-LY3 354 1 208 33 2 34 119 HMCN1
SE_02_019300467 chr1:185557904-185575476 Sample_02_0193 Kidney Patient_x750N 467 3 518 67 8 69 119 HMCN1
SE_02_014600385 chr1:185558122-185573061 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 385 3 435 56 7 62 119 HMCN1
SE_00_002300768 chr1:185558137-185575087 Sample_00_0023 Embryo mesenchymal-stem-cell 768 5 494 64 8 68 119 HMCN1
SE_02_023400998 chr1:185558812-185571332 Sample_02_0234 Tonsil Th17 998 3 359 48 6 58 47 HMCN1
SE_02_023100519 chr1:185558862-185570683 Sample_02_0231 Tonsil ILC1 519 2 344 44 6 55 46 HMCN1
SE_02_023300661 chr1:185559306-185570483 Sample_02_0233 Tonsil Th1 661 4 322 40 6 50 46 HMCN1
SE_02_002600263 chr1:185559665-185571276 Sample_02_0026 Blood CD4donorE 263 6 326 40 6 42 46 HMCN1
SE_02_042800956 chr1:185560706-185586004 Sample_02_0428 Kidney 12364284_VHL- 956 7 750 73 13 41 46 HMCN1,IVNS1ABP
SE_01_005400110 chr1:185593639-185612031 Sample_01_0054 Haematopoietic and lymphoid tissue OCI-LY3 110 1 550 36 3 20 40 HMCN1
SE_00_003101291 chr1:185624848-185663901 Sample_00_0031 Placenta placenta 1291 6 1221 12 1 52 91 HMCN1
SE_01_005400330 chr1:185626073-185675391 Sample_01_0054 Haematopoietic and lymphoid tissue OCI-LY3 330 7 1486 17 1 92 91 HMCN1
SE_02_005700755 chr1:185630369-185647775 Sample_02_0057 Mammary gland vHMEC 755 7 565 6 1 16 0 HMCN1
SE_02_003800922 chr1:185631384-185655542 Sample_02_0038 Embryo DE 922 4 797 10 1 23 0 HMCN1
SE_01_004500668 chr1:185631868-185647830 Sample_01_0045 Mammary gland mammary-epithelial-cell 668 3 534 7 1 16 0 HMCN1
SE_02_012500409 chr1:185643824-185648230 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 409 1 137 2 0 9 0 HMCN1
SE_02_105900005 chr1:185644154-185751441 Sample_02_1059 Bone A673_WT 5 44 2895 124 2 243 129 HMCN1,LINC01350
SE_02_147300005 chr1:185644180-185751441 Sample_02_1473 Bone A-673 5 43 2895 124 2 243 129 HMCN1,LINC01350
SE_02_105800006 chr1:185644205-185746297 Sample_02_1058 Bone A673_SA2 Rescue 6 36 2792 119 2 229 129 HMCN1,LINC01350
SE_02_019700134 chr1:185644310-185653518 Sample_02_0197 Stomach SNU1750 134 4 289 5 0 12 0 HMCN1
SE_02_148500003 chr1:185644494-185737446 Sample_02_1485 Bone SK-ES-1 3 27 2533 111 1 198 129 HMCN1,LINC01350
SE_02_028400099 chr1:185644497-185746148 Sample_02_0284 Pelvis patient 119 99 14 2781 118 1 229 129 HMCN1
SE_02_147900012 chr1:185644619-185746843 Sample_02_1479 Bone EW-7 12 26 2789 119 2 229 129 HMCN1,LINC01350
SE_01_006400014 chr1:185644815-185729277 Sample_01_0064 Brain: derived from metastatic site: supra-orbital area SK-N-MC 14 15 2336 107 1 157 0 HMCN1
SE_02_148600012 chr1:185644906-185736747 Sample_02_1486 Bone SK-N-MC 12 40 2501 111 1 197 129 HMCN1,LINC01350
SE_02_106100004 chr1:185644919-185752619 Sample_02_1061 Bone TC71_WT 4 40 2905 126 2 251 129 HMCN1,LINC01350
SE_02_148800004 chr1:185644919-185752619 Sample_02_1488 Bone TC-71 4 39 2905 126 2 251 129 HMCN1,LINC01350
SE_02_148400003 chr1:185644939-185727844 Sample_02_1484 Bone Rh1 3 23 2290 106 1 127 0 LINC01350,HMCN1
SE_02_147400002 chr1:185644956-185737357 Sample_02_1474 Bone CHLA-10 2 17 2512 111 1 198 129 HMCN1,LINC01350
SE_02_106000009 chr1:185645001-185737772 Sample_02_1060 Bone TC71_SA2 KO 9 32 2520 111 1 201 129 HMCN1,LINC01350
SE_02_143200016 chr1:185645022-185881541 Sample_02_1432 Bone A673 STAG2 WT 16 92 6164 313 5 632 236 HMCN1,LINC01350
SE_02_147600016 chr1:185645067-185737283 Sample_02_1476 Bone EW-1 16 29 2508 111 1 198 129 HMCN1,LINC01350
SE_02_143300063 chr1:185645117-185791689 Sample_02_1433 Bone A673 STAG2 null 63 52 3904 166 4 358 129 HMCN1,LINC01350
SE_02_148200026 chr1:185645170-185737563 Sample_02_1482 Bone POE 26 37 2510 110 1 201 129 HMCN1,LINC01350
SE_02_070200015 chr1:185645464-185736744 Sample_02_0702 Bone David_TC71 15 30 2484 110 1 197 129 HMCN1,LINC01350
SE_02_148900030 chr1:185647892-185737502 Sample_02_1489 Bone TC-106 30 31 2446 109 1 192 129 HMCN1,LINC01350
SE_02_148300004 chr1:185670674-185737513 Sample_02_1483 Bone RD-ES 4 15 1787 103 1 151 129 HMCN1,LINC01350
SE_02_148000004 chr1:185670695-185859233 Sample_02_1480 Bone MHH-ES-1 4 49 4876 269 5 544 167 HMCN1,LINC01350
SE_02_147800007 chr1:185677102-185739824 Sample_02_1478 Bone EW-3 7 13 1677 102 1 132 129 HMCN1,LINC01350
SE_01_001700024 chr1:185678232-185697629 Sample_01_0017 Muscle A673 24 3 448 23 0 29 0 HMCN1
SE_02_148700004 chr1:185680061-185722147 Sample_02_1487 Bone TC-32 4 14 1166 70 1 39 0 HMCN1
SE_02_070100020 chr1:185680268-185737453 Sample_02_0701 Bone David_TC32 20 21 1547 95 1 115 129 HMCN1
SE_02_128000103 chr1:185680460-185737494 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 103 9 1541 95 1 117 129 HMCN1
SE_02_147500025 chr1:185682430-185742683 Sample_02_1475 Bone CHLA-25 25 15 1649 101 1 123 129 HMCN1
SE_02_155000012 chr1:185683590-185736641 Sample_02_1550 Bone EWS502 12 19 1467 95 1 111 129 HMCN1
SE_02_147700003 chr1:185684680-185737061 Sample_02_1477 Bone EW-22 3 11 1447 94 1 112 129 HMCN1
SE_02_148100106 chr1:185684760-185737162 Sample_02_1481 Bone MIC 106 9 1443 94 1 112 129 HMCN1
SE_01_001700159 chr1:185713525-185721636 Sample_01_0017 Muscle A673 159 1 237 17 1 3 0 HMCN1
SE_01_009300518 chr1:185718698-185865956 Sample_01_0093 Aorta ascending aorta 518 53 3735 205 4 499 229 HMCN1
SE_01_011000902 chr1:185719285-185770061 Sample_01_0110 Aorta thoracic aorta_37y 902 17 1252 62 2 184 129 HMCN1
SE_02_062900681 chr1:185727481-185746539 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 681 4 501 13 1 103 129 HMCN1
SE_02_063100492 chr1:185732129-185736800 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 492 2 100 0 0 39 129 HMCN1
SE_02_055600159 chr1:185758107-185791037 Sample_02_0556 iPSCs BOFS hiPSC cl1 159 5 869 36 1 103 0 HMCN1
SE_02_152200858 chr1:185762108-185791954 Sample_02_1522 Skin A375 RTKi 858 5 815 33 1 98 0 HMCN1
SE_02_147700110 chr1:185765700-185804899 Sample_02_1477 Bone EW-22 110 12 1099 48 1 127 0 HMCN1
SE_02_148500033 chr1:185765862-185869914 Sample_02_1485 Bone SK-ES-1 33 29 2674 155 2 358 107 HMCN1
SE_02_147800028 chr1:185766156-185856550 Sample_02_1478 Bone EW-3 28 22 2326 135 2 325 38 HMCN1
SE_01_006400092 chr1:185766552-185874952 Sample_01_0064 Brain: derived from metastatic site: supra-orbital area SK-N-MC 92 17 2781 162 2 364 107 HMCN1
SE_02_105900118 chr1:185766850-185869742 Sample_02_1059 Bone A673_WT 118 27 2645 153 2 356 107 HMCN1
SE_02_147300120 chr1:185766850-185869742 Sample_02_1473 Bone A-673 120 27 2645 153 2 356 107 HMCN1
SE_02_148301030 chr1:185767738-185789484 Sample_02_1483 Bone RD-ES 1030 7 601 27 1 74 0 HMCN1
SE_02_128001221 chr1:185768187-185817053 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1221 13 1326 67 1 148 0 HMCN1
SE_02_105800539 chr1:185769735-185814185 Sample_02_1058 Bone A673_SA2 Rescue 539 14 1234 61 1 134 0 HMCN1
SE_02_018500102 chr1:185773757-185837063 Sample_02_0185 Skin UACC257 102 9 1688 108 2 197 0 HMCN1
SE_02_070100148 chr1:185773943-185817565 Sample_02_0701 Bone David_TC32 148 22 1215 62 1 143 0 HMCN1
SE_02_018400223 chr1:185773985-185812047 Sample_02_0184 Skin SKMEL30 223 7 1091 52 1 122 0 HMCN1
SE_02_149300102 chr1:185774057-185836987 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 102 17 1679 108 2 197 0 HMCN1
SE_01_011100568 chr1:185774065-185826387 Sample_01_0111 Brain SK-N-SH 568 15 1424 83 2 180 0 HMCN1
SE_02_152100106 chr1:185774105-185812351 Sample_02_1521 Skin A375 DMSO 106 7 1098 53 1 123 0 HMCN1
SE_02_018300522 chr1:185774623-185793684 Sample_02_0183 Skin SKMEL2 522 3 585 25 1 51 0 HMCN1
SE_02_018000458 chr1:185774704-185793641 Sample_02_0180 melanoma CJM 458 3 585 25 1 51 0 HMCN1
SE_02_018100425 chr1:185774724-185805103 Sample_02_0181 melanoma COLO679 425 3 909 39 1 83 0 HMCN1
SE_02_042300731 chr1:185774767-185792510 Sample_02_0423 Skin A375 731 6 545 22 1 51 0 HMCN1
SE_02_057200518 chr1:185775036-185809959 Sample_02_0572 Brain LN229_1_mM_glucose 518 9 1030 47 1 109 0 HMCN1
SE_02_057000183 chr1:185775123-185811147 Sample_02_0570 Brain LN229_10_mM_glucose 183 10 1054 51 1 119 0 HMCN1
SE_02_057100288 chr1:185775227-185814051 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 288 13 1124 55 1 128 0 HMCN1
SE_02_055000142 chr1:185775231-185876161 Sample_02_0550 Other Aska-BAF47KO1 shCt 142 34 2622 153 2 324 107 HMCN1
SE_02_148200159 chr1:185803652-185872342 Sample_02_1482 Bone POE 159 30 1679 117 1 237 107 HMCN1
SE_02_148700092 chr1:185803991-185817112 Sample_02_1487 Bone TC-32 92 10 317 22 0 56 0 HMCN1
SE_02_147900261 chr1:185804435-185870145 Sample_02_1479 Bone EW-7 261 17 1601 109 1 231 107 HMCN1
SE_02_106100496 chr1:185832968-185872463 Sample_02_1061 Bone TC71_WT 496 17 976 55 0 134 107 HMCN1
SE_02_148800496 chr1:185832968-185872463 Sample_02_1488 Bone TC-71 496 17 976 55 0 134 107 HMCN1
SE_02_147700283 chr1:185833010-185869553 Sample_02_1477 Bone EW-22 283 14 897 47 0 130 107 HMCN1
SE_02_148700148 chr1:185833011-185853528 Sample_02_1487 Bone TC-32 148 6 480 25 0 93 38 HMCN1
SE_02_105801153 chr1:185833122-185862641 Sample_02_1058 Bone A673_SA2 Rescue 1153 12 709 38 0 110 38 HMCN1
SE_02_128000767 chr1:185833202-185870253 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 767 7 918 49 0 130 107 HMCN1
SE_02_148100326 chr1:185833244-185870629 Sample_02_1481 Bone MIC 326 14 929 47 0 130 107 HMCN1
SE_02_111000845 chr1:185842811-185865514 Sample_02_1110 Other HGrC1 845 11 569 26 0 89 76 HMCN1
SE_02_127901642 chr1:185846650-185867428 Sample_02_1279 Bone Mesenchymal stem cells 1642 7 502 21 0 57 69 HMCN1
SE_02_132800547 chr1:185850690-185876484 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 547 7 651 32 0 62 69 HMCN1
SE_02_113301049 chr1:185857032-185866231 Sample_02_1133 Liver Hepatic stellate cells 1049 3 226 10 0 27 69 HMCN1
SE_02_086100098 chr1:185907507-185915208 Sample_02_0861 iPSCs SAH_WT 98 5 195 18 1 29 69 HMCN1
SE_02_086000281 chr1:185909069-185915339 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 281 4 164 17 1 28 69 HMCN1
SE_02_106100429 chr1:185915026-185940250 Sample_02_1061 Bone TC71_WT 429 8 542 15 0 75 188 HMCN1
SE_02_148800428 chr1:185915026-185940250 Sample_02_1488 Bone TC-71 428 8 542 15 0 75 188 HMCN1
SE_02_148500117 chr1:185926400-186009874 Sample_02_1485 Bone SK-ES-1 117 26 2006 77 0 286 835 HMCN1
SE_02_068300436 chr1:185926518-185973849 Sample_02_0683 Lung DMS114 436 29 1104 24 0 167 253 HMCN1
SE_02_117200803 chr1:185934600-185964993 Sample_02_1172 Embryo H9 WT 803 6 765 13 0 81 101 HMCN1
SE_02_086000571 chr1:185938196-185965259 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 571 11 702 10 0 73 101 HMCN1
SE_02_156700804 chr1:185938246-185965441 Sample_02_1567 iPSCs CiPSC 804 4 705 10 0 73 101 HMCN1
SE_02_157100152 chr1:185956816-185975092 Sample_02_1571 Fibroblast Fibroblast cells 152 4 400 10 0 115 175 HMCN1
SE_02_127901696 chr1:185957195-185975217 Sample_02_1279 Bone Mesenchymal stem cells 1696 6 392 10 0 111 151 HMCN1
SE_02_113300263 chr1:185957260-185975016 Sample_02_1133 Liver Hepatic stellate cells 263 5 384 10 0 108 150 HMCN1
SE_02_063400224 chr1:185958260-185975493 Sample_02_0634 Gastrointestinal Stromal GIST-48B_JQ1 224 3 374 11 0 103 146 HMCN1
SE_02_055600537 chr1:185958799-185972610 Sample_02_0556 iPSCs BOFS hiPSC cl1 537 5 293 9 0 86 146 HMCN1
SE_00_002300975 chr1:185959455-185975098 Sample_00_0023 Embryo mesenchymal-stem-cell 975 4 331 10 0 102 146 HMCN1
SE_02_055700177 chr1:185959499-185974120 Sample_02_0557 iPSCs WT hiPSC#1 177 2 307 10 0 97 146 HMCN1
SE_02_055200227 chr1:185959701-185975313 Sample_02_0552 Other SYO1 shCt 227 9 337 10 0 100 146 HMCN1
SE_02_063200475 chr1:185959742-185975229 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 475 6 334 10 0 100 146 HMCN1
SE_02_150200381 chr1:185960285-185995781 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 381 12 822 45 0 176 543 HMCN1
SE_02_008800278 chr1:185960286-185975173 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 278 5 318 10 0 98 146 HMCN1
SE_02_150300526 chr1:185960361-185986460 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 526 9 591 35 0 144 307 HMCN1
SE_01_006600586 chr1:185960456-185975482 Sample_01_0066 Smooth muscle smooth-muscle-cell 586 3 322 11 0 98 146 HMCN1
SE_02_150700356 chr1:185960625-185986336 Sample_02_1507 Brain SHEP-21N_DOX_24h 356 9 588 35 0 141 307 HMCN1
SE_02_150100396 chr1:185960642-185985244 Sample_02_1501 Brain SHEP-21N_NOSPIKE 396 9 569 32 0 135 307 HMCN1
SE_02_126401210 chr1:185960672-185974916 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1210 5 305 10 0 92 146 HMCN1,TPR
SE_02_149800415 chr1:185960826-185986452 Sample_02_1498 Brain SHEP-21N_DOX_2h 415 7 584 35 0 139 307 HMCN1
SE_02_149700307 chr1:185961162-185985274 Sample_02_1497 Brain SHEP-21N 307 5 555 32 0 128 307 HMCN1
SE_02_154300334 chr1:185961250-185972926 Sample_02_1543 Gastrointestinal Stromal GIST-48 334 7 242 10 0 70 146 HMCN1
SE_02_009100435 chr1:185961252-185975070 Sample_02_0091 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_0 435 3 287 10 0 86 146 HMCN1
SE_02_047401042 chr1:185961851-185975180 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1042 4 281 10 0 83 146 HMCN1
SE_02_124100529 chr1:185964458-185975619 Sample_02_1241 Skin MCC26_virus_negative 529 6 233 10 0 66 74 HMCN1
SE_02_111000611 chr1:185969053-185996966 Sample_02_1110 Other HGrC1 611 9 680 41 0 113 434 HMCN1

Genomic distribution of SEs associated with HMCN1

The strength of the tissue affected by the gene


Expression of HMCN1