SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000124440
Gene: HIF3A Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:46297042-46343433 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_111500568 chr19:46258540-46290118 Sample_02_1115 Liver HepG2 568 11 1118 145 2 0 0 IGFL1,DKFZP434J0226,HIF3A
SE_04_001000474 chr19:46258716-46290265 Sample_04_0010 Lung A549 TGFb 474 4 1121 148 2 0 0 IGFL1,DKFZP434J0226,HIF3A
SE_02_077500930 chr19:46258786-46311026 Sample_02_0775 Pancreas EndoC-BH1_SE 930 11 1726 245 5 118 1034 HIF3A,PPP5C,DKFZP434J0226,IGFL1
SE_02_042900649 chr19:46258800-46273552 Sample_02_0429 Kidney 12364284_VHL+ 649 6 516 21 1 0 0 IGFL1,HIF3A,DKFZP434J0226
SE_02_004300628 chr19:46259241-46279781 Sample_02_0043 Embryo endodermal CyT49_ES_D2 628 6 735 64 1 0 0 IGFL1,HIF3A,DKFZP434J0226
SE_02_003801404 chr19:46265409-46279779 Sample_02_0038 Embryo DE 1404 5 495 52 1 0 0 IGFL1,HIF3A
SE_02_057300344 chr19:46270695-46280861 Sample_02_0573 Blood Nalm6_1 344 3 373 52 0 0 0 HIF3A,IGFL1
SE_02_073900447 chr19:46271056-46280910 Sample_02_0739 Blood Nalm6 447 1 367 52 0 0 0 HIF3A,IGFL1
SE_00_000300270 chr19:46271590-46304863 Sample_00_0003 Adrenal gland adrenal-gland_97d 270 5 1069 202 4 82 499 HIF3A,IGFL1,PPP5C
SE_02_046600780 chr19:46272256-46320729 Sample_02_0466 Adipose visceral adipocytes 780 13 1582 254 4 150 1323 HIF3A,IGFL1,PPP5C,NOVA2,PNMAL1,CCDC8
SE_02_089200450 chr19:46281541-46306442 Sample_02_0892 Heart left ventricle_LV1215 450 5 752 150 4 97 642 HIF3A,PPP5C,CCDC8
SE_01_007400604 chr19:46281642-46309115 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 604 4 847 161 4 107 949 HIF3A,PPP5C
SE_01_007700442 chr19:46281660-46319699 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 442 5 1199 191 4 148 1212 HIF3A,PPP5C
SE_01_008300536 chr19:46281683-46306025 Sample_01_0083 Sigmoid colon sigmoid-colon 536 3 737 147 4 97 623 HIF3A,PPP5C
SE_02_091000504 chr19:46281737-46328095 Sample_02_0910 Heart left ventricle_DCM_LV1275 504 13 1447 208 4 161 1547 HIF3A,PPP5C
SE_01_009000354 chr19:46281828-46321693 Sample_01_0090 Lung upper-lobe-of-left-lung 354 8 1253 199 4 150 1350 HIF3A,PPP5C
SE_01_007800558 chr19:46281833-46306669 Sample_01_0078 Heart left ventricle heart-left-ventricle 558 3 741 148 4 97 655 HIF3A,PPP5C
SE_01_008100534 chr19:46281844-46305883 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 534 3 723 144 4 97 623 HIF3A,PPP5C
SE_01_010400344 chr19:46281951-46319350 Sample_01_0104 Lung upper lobe of left lung 344 9 1177 189 4 140 1212 HIF3A,PPP5C
SE_02_090400697 chr19:46282046-46305572 Sample_02_0904 Heart left ventricle_DCM_LV1028 697 7 704 143 4 96 617 HIF3A,PPP5C
SE_02_089900530 chr19:46282143-46302086 Sample_02_0899 Heart left ventricle_LV1400 530 6 602 133 3 62 275 HIF3A,PPP5C,CCDC8
SE_02_088900571 chr19:46282161-46307118 Sample_02_0889 Heart left ventricle_LV1183 571 4 738 148 4 97 666 HIF3A,PPP5C,CCDC8
SE_02_089800464 chr19:46282186-46307371 Sample_02_0898 Heart left ventricle_LV1356 464 7 745 149 4 97 666 HIF3A,PPP5C,CCDC8
SE_02_089600447 chr19:46282193-46306417 Sample_02_0896 Heart left ventricle_LV1294 447 7 722 147 4 97 637 HIF3A,PPP5C,CCDC8
SE_01_009800360 chr19:46282225-46308220 Sample_01_0098 Heart left ventricle_51y 360 4 779 154 4 99 700 HIF3A,PPP5C,CCDC8
SE_02_090100545 chr19:46282264-46306228 Sample_02_0901 Heart left ventricle_LV1471 545 8 714 147 4 97 623 HIF3A,PPP5C,CCDC8
SE_02_088800462 chr19:46282334-46306091 Sample_02_0888 Heart left ventricle_LV1160 462 6 708 146 4 97 623 HIF3A,PPP5C,CCDC8
SE_02_090501033 chr19:46282413-46302148 Sample_02_0905 Heart left ventricle_DCM_LV1033 1033 6 594 132 3 62 275 HIF3A,PPP5C
SE_02_090600683 chr19:46282671-46306073 Sample_02_0906 Heart left ventricle_DCM_LV1072 683 5 692 144 4 97 623 HIF3A,PPP5C
SE_02_089100552 chr19:46282675-46305762 Sample_02_0891 Heart left ventricle_LV1202 552 6 682 140 4 97 623 HIF3A,PPP5C,CCDC8
SE_02_090000535 chr19:46282707-46303993 Sample_02_0900 Heart left ventricle_LV1452 535 4 631 138 4 69 418 HIF3A,PPP5C,CCDC8
SE_02_091600569 chr19:46282713-46302198 Sample_02_0916 Heart left ventricle_DCM_LV1392 569 5 578 132 3 62 275 HIF3A,PPP5C
SE_02_091301458 chr19:46282735-46302273 Sample_02_0913 Heart left ventricle_DCM_LV1304 1458 6 579 131 3 62 275 HIF3A,PPP5C
SE_02_088700372 chr19:46282741-46305536 Sample_02_0887 Heart left ventricle_LV1121 372 5 668 139 4 96 604 HIF3A,PPP5C,CCDC8
SE_02_089000371 chr19:46282770-46305733 Sample_02_0890 Heart left ventricle_LV1200 371 4 674 139 4 97 623 HIF3A,PPP5C,CCDC8
SE_02_092000378 chr19:46282798-46304155 Sample_02_0920 Heart left ventricle_DCM_LV1535 378 6 629 136 4 79 454 HIF3A,PPP5C
SE_02_124200618 chr19:46282803-46317621 Sample_02_1242 Skin UISO_virus_negative 618 10 1075 176 4 136 1212 HIF3A,PPP5C
SE_02_091100709 chr19:46282827-46302298 Sample_02_0911 Heart left ventricle_DCM_LV1290 709 5 577 130 3 62 275 HIF3A,PPP5C
SE_02_130901094 chr19:46282846-46301884 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 1094 3 564 127 3 62 275 HIF3A,PPP5C
SE_02_089400357 chr19:46283078-46305656 Sample_02_0894 Heart left ventricle_LV1248 357 5 660 137 4 97 623 HIF3A,PPP5C,CCDC8
SE_02_091800636 chr19:46283102-46302085 Sample_02_0918 Heart left ventricle_DCM_LV1437 636 4 563 127 3 62 275 HIF3A,PPP5C
SE_02_090701084 chr19:46283122-46305647 Sample_02_0907 Heart left ventricle_DCM_LV1223 1084 4 659 137 4 97 623 HIF3A,PPP5C
SE_02_091200968 chr19:46283144-46303439 Sample_02_0912 Heart left ventricle_DCM_LV1300 968 5 606 135 4 63 279 HIF3A,PPP5C
SE_02_089700882 chr19:46283193-46302463 Sample_02_0897 Heart left ventricle_LV1325 882 4 576 129 3 62 275 HIF3A,PPP5C,CCDC8
SE_00_005500936 chr19:46283205-46301794 Sample_00_0055 Spleen spleen 34y 936 4 558 126 3 62 275 HIF3A,PPP5C,CCDC8
SE_00_002100308 chr19:46283244-46305482 Sample_00_0021 Lung lung_3y 308 4 653 136 4 96 594 HIF3A,PPP5C
SE_02_090200386 chr19:46283252-46305709 Sample_02_0902 Heart left ventricle_LV1558 386 6 661 136 4 97 623 HIF3A,PPP5C,CCDC8
SE_02_091400761 chr19:46283303-46302148 Sample_02_0914 Heart left ventricle_DCM_LV1342 761 5 559 125 3 62 275 HIF3A,PPP5C
SE_02_091900472 chr19:46283351-46304634 Sample_02_0919 Heart left ventricle_DCM_LV1532 472 5 626 134 4 82 499 HIF3A,PPP5C
SE_02_089300426 chr19:46283354-46306118 Sample_02_0893 Heart left ventricle_LV1226 426 5 669 139 4 97 623 HIF3A,PPP5C,CCDC8
SE_02_089500446 chr19:46283362-46302449 Sample_02_0895 Heart left ventricle_LV1259 446 5 569 128 3 62 275 HIF3A,PPP5C,CCDC8
SE_00_002200680 chr19:46283409-46312931 Sample_00_0022 Lung lung_30y 680 6 920 167 4 136 1212 HIF3A,PPP5C
SE_02_130800822 chr19:46283420-46302007 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 822 5 552 125 3 62 275 HIF3A,PPP5C
SE_00_004000754 chr19:46283424-46303712 Sample_00_0040 Spleen spleen_30y 754 6 602 133 4 65 357 HIF3A,PPP5C
SE_02_151800522 chr19:46283440-46301811 Sample_02_1518 Umbilical vein HUVEC_Scr 522 7 549 125 3 62 275 HIF3A,PPP5C,PNMAL1
SE_00_002500536 chr19:46283454-46304284 Sample_00_0025 Muscle of leg muscle-of-leg 536 4 615 133 4 82 497 HIF3A,PPP5C
SE_00_005200434 chr19:46283495-46301820 Sample_00_0052 Heart left ventricle 3y 434 6 548 125 3 62 275 HIF3A,PPP5C,CCDC8
SE_00_004600460 chr19:46283511-46301782 Sample_00_0046 Heart right ventricle_34y 460 5 548 125 3 62 275 HIF3A,PPP5C,CCDC8
SE_02_092200471 chr19:46283515-46304654 Sample_02_0922 Heart fetal heart_PCW10_12434 471 3 623 134 4 82 499 HIF3A,PPP5C
SE_00_003400439 chr19:46283934-46305700 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 439 4 634 131 3 97 623 HIF3A,PPP5C
SE_02_092500387 chr19:46284054-46304390 Sample_02_0925 Heart fetal heart_PCW17_12570 387 4 598 130 3 82 499 HIF3A,PPP5C
SE_02_040100613 chr19:46287651-46314607 Sample_02_0401 Mammary gland SUM159PT-T47D 613 3 827 133 3 136 1212 HIF3A,PPP5C
SE_02_028000345 chr19:46287755-46316203 Sample_02_0280 Mammary gland SUM159_DMSO_24h 345 3 868 136 3 136 1212 HIF3A,PPP5C
SE_02_116700543 chr19:46287918-46301973 Sample_02_1167 Biliary H69_TGF Vehicle_1 543 3 397 89 2 62 275 HIF3A,PPP5C
SE_02_037200195 chr19:46288057-46302980 Sample_02_0372 Skeletal muscle RMS008 195 3 417 92 2 62 275 HIF3A,PPP5C
SE_02_116800426 chr19:46288070-46315902 Sample_02_1168 Biliary H69_TGF Vehicle_2 426 7 846 135 3 136 1212 HIF3A,PPP5C
SE_02_116600902 chr19:46288121-46313964 Sample_02_1166 Biliary H69_TGF beta_16h_1 902 4 785 129 3 136 1212 HIF3A,PPP5C
SE_02_074700369 chr19:46288192-46356014 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 369 30 2004 200 5 261 2946 HIF3A,PPP5C
SE_02_092100771 chr19:46288254-46302422 Sample_02_0921 Heart embryonic heart_CS22 771 3 393 86 2 62 275 HIF3A,PPP5C
SE_02_060200717 chr19:46288313-46302138 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 717 2 378 82 2 62 275 HIF3A,PPP5C
SE_02_092400403 chr19:46288493-46304308 Sample_02_0924 Heart fetal heart_PCW10_12569 403 2 433 90 3 82 499 HIF3A,PPP5C
SE_01_008500974 chr19:46288497-46316531 Sample_01_0085 Stomach stomach 974 3 840 129 3 136 1212 HIF3A,PPP5C
SE_02_092300557 chr19:46288509-46304202 Sample_02_0923 Heart fetal heart_PCW10_12522 557 2 429 90 3 82 467 HIF3A,PPP5C
SE_00_005700361 chr19:46288526-46301819 Sample_00_0057 Heart right ventricle 3y 361 5 367 82 2 62 275 HIF3A,PPP5C,CCDC8
SE_00_002000361 chr19:46288652-46305403 Sample_00_0020 Large intestine large-intestine_108d 361 2 458 92 3 96 581 HIF3A,PPP5C
SE_01_003700498 chr19:46288661-46304197 Sample_01_0037 Liver hepatocyte 498 2 424 90 3 82 466 HIF3A,PPP5C
SE_00_002600433 chr19:46288672-46304387 Sample_00_0026 Muscle of trunk muscle-of-trunk 433 3 431 91 3 82 499 HIF3A,PPP5C
SE_02_009000258 chr19:46288827-46301820 Sample_02_0090 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_6 258 2 353 78 2 62 275 HIF3A,PPP5C
SE_00_003600302 chr19:46288828-46305385 Sample_00_0036 Small intestine small-intestine_108days 302 3 449 88 3 95 577 HIF3A,PPP5C
SE_01_009301008 chr19:46288898-46321564 Sample_01_0093 Aorta ascending aorta 1008 4 990 143 3 150 1330 HIF3A,PPP5C
SE_02_009300590 chr19:46288910-46302022 Sample_02_0093 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_6 590 2 354 78 2 62 275 HIF3A,PPP5C
SE_02_091700935 chr19:46288971-46302204 Sample_02_0917 Heart left ventricle_DCM_LV1433 935 2 359 80 2 62 275 HIF3A,PPP5C
SE_02_021601120 chr19:46289056-46317745 Sample_02_0216 Skin NHEK_scramble 1120 4 859 124 3 136 1212 HIF3A,PPP5C
SE_00_004300167 chr19:46295511-46305129 Sample_00_0043 Stomach stomach_96d 167 1 253 31 2 82 514 HIF3A,PPP5C
SE_02_046500528 chr19:46296347-46321315 Sample_02_0465 Adipose subcutaneous adipocytes 528 6 770 86 2 145 1330 HIF3A,PPP5C,NOVA2,PNMAL1,CCDC8
SE_00_004200729 chr19:46296349-46316050 Sample_00_0042 Stomach stomach_30y 729 3 606 68 2 131 1212 HIF3A,PPP5C
SE_02_118100281 chr19:46296360-46320696 Sample_02_1181 Brain GBM10 281 9 755 84 2 145 1317 HIF3A,PPP5C
SE_02_119301004 chr19:46296400-46301829 Sample_02_1193 Brain GBM27 1004 1 141 21 1 57 275 HIF3A,PPP5C
SE_02_155900750 chr19:46296448-46301883 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 750 1 141 21 1 57 275 HIF3A,PPP5C
SE_01_010900782 chr19:46296521-46316181 Sample_01_0109 Colon transverse colon_54y 782 3 607 67 2 131 1212 HIF3A,PPP5C
SE_02_156001206 chr19:46296536-46304406 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1206 1 208 29 2 77 499 HIF3A,PPP5C
SE_02_146700494 chr19:46296617-46318355 Sample_02_1467 Blood HUDEP-2_LRFKO 494 5 668 70 2 131 1212 HIF3A,PPP5C
SE_02_041300158 chr19:46296663-46301898 Sample_02_0413 Brain GBM_2493 158 1 133 17 1 57 275 HIF3A,PPP5C
SE_02_076500349 chr19:46297068-46320900 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 349 4 745 80 2 133 1268 HIF3A,PPP5C
SE_00_002900820 chr19:46297070-46301596 Sample_00_0029 Ovary ovary 820 4 121 16 1 44 213 HIF3A,PPP5C
SE_02_155400598 chr19:46298288-46305804 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 598 3 199 20 1 67 470 HIF3A,PPP5C
Genomic distribution of SEs associated with HIF3A
Genome Browser

The strength of the tissue affected by the gene

Expression of HIF3A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)