SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_060200717
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr19:46288313-46302138
Size: 13825
Super-enhancer rank 717
Number of SE elements: 2
ChIP density(Case|Control): 22426.915|3558.555
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HIF3A ;
ROSE Overlap HIF3A ;
ROSE Proximal HIF3A ; PPP5C ;
ROSE Closest HIF3A ;
Lasso PPP5C ;
PreSTIGE ;
ABC ;
BETA HIF3A ; DKFZp434J0226 ; PPP5C ; IGFL1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200717 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers