SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000136542
Gene: GALNT5 Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:157257705-157318491 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077000768 chr2:156883679-156937737 Sample_02_0770 Ovary OVCA429_shLuc 768 27 1291 33 3 171 31 GALNT5
SE_02_020900810 chr2:157028947-157057443 Sample_02_0209 Lung MRC-5_MRC5_1DPT 810 7 684 31 2 178 0 GALNT5
SE_02_049901106 chr2:157029242-157058016 Sample_02_0499 Fetal lung IMR90 IR Senescence 1106 12 683 32 2 181 0 GALNT5
SE_02_154800641 chr2:157030949-157067685 Sample_02_1548 Gastrointestinal Stromal GIST-226 641 13 845 49 2 210 0 GALNT5
SE_02_017100358 chr2:157145680-157195744 Sample_02_0171 Lung IMR-90_proliferating 358 8 1133 41 0 245 0 GALNT5
SE_02_020900046 chr2:157145711-157195756 Sample_02_0209 Lung MRC-5_MRC5_1DPT 46 11 1131 41 0 245 0 GALNT5
SE_02_017200797 chr2:157145847-157195865 Sample_02_0172 Lung IMR-90_quiescent 797 7 1131 41 0 245 0 GALNT5
SE_02_017500090 chr2:157145898-157195112 Sample_02_0175 Lung IMR-90_Etoposide 90 17 1113 41 0 245 0 GALNT5
SE_02_154800259 chr2:157147800-157195568 Sample_02_1548 Gastrointestinal Stromal GIST-226 259 17 1097 41 0 241 0 GALNT5
SE_02_049900110 chr2:157148167-157195692 Sample_02_0499 Fetal lung IMR90 IR Senescence 110 22 1094 41 0 240 0 GALNT5
SE_02_028000220 chr2:157149397-157194941 Sample_02_0280 Mammary gland SUM159_DMSO_24h 220 5 1050 39 0 228 0 GALNT5
SE_02_126300263 chr2:157149489-157194349 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 263 11 1037 38 0 215 0 GALNT5
SE_02_017300404 chr2:157150944-157190355 Sample_02_0173 Lung IMR-90_senescent 404 8 909 35 0 129 0 GALNT5
SE_02_018300440 chr2:157159261-157195289 Sample_02_0183 Skin SKMEL2 440 10 841 31 0 174 0 GALNT5
SE_02_066100859 chr2:157159909-157194669 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 859 12 813 30 0 174 0 GALNT5
SE_02_152100407 chr2:157160488-157195841 Sample_02_1521 Skin A375 DMSO 407 6 822 30 0 174 0 GALNT5
SE_02_030100534 chr2:157166726-157196001 Sample_02_0301 Neuroblastoma GIMEN 534 3 658 24 0 147 0 GALNT5
SE_02_018000344 chr2:157166832-157194351 Sample_02_0180 melanoma CJM 344 8 623 23 0 144 0 GALNT5
SE_02_079700186 chr2:157166946-157195074 Sample_02_0797 Brain PNMNK1 186 13 635 24 0 147 0 GALNT5
SE_02_126700253 chr2:157167875-157195133 Sample_02_1267 Bone Im-GCT-4072_G34W 253 10 608 22 0 147 0 GALNT5
SE_02_018100410 chr2:157168494-157194715 Sample_02_0181 melanoma COLO679 410 3 591 20 0 147 0 GALNT5
SE_02_099101029 chr2:157169465-157194001 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 1029 10 551 18 0 141 0 GALNT5
SE_02_057000495 chr2:157169652-157195329 Sample_02_0570 Brain LN229_10_mM_glucose 495 13 574 19 0 147 0 GALNT5
SE_02_050000874 chr2:157169662-157194089 Sample_02_0500 Fetal lung IMR90_#2 874 25 547 18 0 141 0 GALNT5
SE_02_049800328 chr2:157169739-157194840 Sample_02_0498 Fetal lung IMR90 Senescent_1 328 15 557 19 0 147 0 GALNT5
SE_02_057100704 chr2:157169853-157195301 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 704 12 567 19 0 147 0 GALNT5
SE_02_057200579 chr2:157170030-157195216 Sample_02_0572 Brain LN229_1_mM_glucose 579 9 559 19 0 147 0 GALNT5
SE_02_145400414 chr2:157170070-157195088 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 414 8 553 19 0 147 0 GALNT5
SE_02_041900850 chr2:157170360-157194205 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 850 9 531 18 0 141 0 GALNT5
SE_02_131100774 chr2:157170375-157195407 Sample_02_1311 Bone marrow HDMSCs 774 5 558 19 0 147 0 GALNT5
SE_02_058800540 chr2:157170526-157194211 Sample_02_0588 Cervix HeLa Kyoto_untreated 540 7 528 18 0 141 0 GALNT5
SE_02_145200768 chr2:157170578-157194135 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 768 8 525 18 0 141 0 GALNT5
SE_02_048100985 chr2:157171620-157195764 Sample_02_0481 Mammary gland MDA-MB231 985 14 539 19 0 140 0 GALNT5
SE_02_150600372 chr2:157171660-157195103 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 372 12 522 19 0 140 0 GALNT5
SE_02_137800775 chr2:157171714-157194201 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 775 13 503 18 0 134 0 GALNT5
SE_01_001800317 chr2:157171813-157194484 Sample_01_0018 Submandibular Salivary Gland ACC112 317 4 508 18 0 140 0 GALNT5
SE_02_145500582 chr2:157172237-157194243 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 582 9 491 18 0 134 0 GALNT5
SE_02_058900553 chr2:157172398-157194211 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 553 6 486 18 0 133 0 GALNT5
SE_02_059000752 chr2:157173018-157194232 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 752 6 471 18 0 130 0 GALNT5
SE_02_062000857 chr2:157173506-157183890 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 857 5 233 6 0 59 0 GALNT5,CYTIP
SE_02_072400541 chr2:157173915-157194740 Sample_02_0724 Pancreatic duct AsPC1_GFP_DOX 541 7 471 17 0 125 0 GALNT5
SE_02_062100134 chr2:157173944-157183747 Sample_02_0621 Aortic Aortic Endothelial Cells_UF 134 3 222 6 0 45 0 GALNT5,ERMN
SE_02_049700232 chr2:157174206-157182797 Sample_02_0497 Fetal lung IMR90_#1 232 4 192 6 0 40 0 GALNT5
SE_02_054500866 chr2:157176333-157195012 Sample_02_0545 Bone marrow K562 WT 866 5 419 15 0 119 0 GALNT5
SE_02_054501009 chr2:157218541-157242742 Sample_02_0545 Bone marrow K562 WT 1009 5 555 24 2 34 0 GALNT5,NR4A2
SE_02_017201047 chr2:157228475-157265018 Sample_02_0172 Lung IMR-90_quiescent 1047 5 907 46 4 76 270 GALNT5
SE_02_026100656 chr2:157228536-157265499 Sample_02_0261 Osteoblastic hFOB_differentiated 656 5 916 46 4 78 270 GALNT5
SE_02_060600522 chr2:157228633-157264922 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 522 9 899 46 4 75 270 GALNT5
SE_02_026300543 chr2:157228668-157265551 Sample_02_0263 Osteoblastic hFOB_undifferentiated 543 6 914 46 4 79 270 GALNT5
SE_02_086700867 chr2:157228678-157265397 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 867 19 910 46 4 76 270 GALNT5
SE_02_020900223 chr2:157228786-157265136 Sample_02_0209 Lung MRC-5_MRC5_1DPT 223 12 899 46 4 76 270 GALNT5
SE_02_026200556 chr2:157228865-157265386 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 556 5 900 46 4 76 270 GALNT5
SE_02_060501232 chr2:157228873-157264933 Sample_02_0605 Skin Skin Fibroblast_DMSO 1232 8 889 46 4 75 270 GALNT5
SE_02_127900517 chr2:157228873-157265437 Sample_02_1279 Bone Mesenchymal stem cells 517 8 900 46 4 76 270 GALNT5
SE_02_049900387 chr2:157228909-157265723 Sample_02_0499 Fetal lung IMR90 IR Senescence 387 14 908 46 4 79 270 GALNT5
SE_02_005500450 chr2:157228918-157262033 Sample_02_0055 Lung IMR-90_Nutlin-3a 450 4 805 43 4 66 270 GALNT5
SE_02_157100680 chr2:157228968-157264704 Sample_02_1571 Fibroblast Fibroblast cells 680 6 883 46 4 75 270 GALNT5
SE_02_005400854 chr2:157229060-157261939 Sample_02_0054 Lung IMR-90_DMSO_1 854 4 800 43 4 66 270 GALNT5
SE_02_050000460 chr2:157229100-157262411 Sample_02_0500 Fetal lung IMR90_#2 460 13 810 45 4 67 270 GALNT5
SE_02_056900598 chr2:157229119-157265742 Sample_02_0569 Periodontal ligament mesenchymal stem cell 598 15 905 46 4 79 270 GALNT5
SE_02_126301602 chr2:157229176-157262051 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1602 4 803 43 4 66 270 GALNT5
SE_02_145200692 chr2:157229181-157261639 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 692 5 794 43 4 65 270 GALNT5
SE_02_145500385 chr2:157229181-157264766 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 385 9 882 46 4 75 270 GALNT5
SE_02_072700347 chr2:157229192-157261715 Sample_02_0727 Fetal lung IMR90_Etoposide 347 7 796 43 4 66 270 GALNT5
SE_02_113300606 chr2:157229215-157264974 Sample_02_1133 Liver Hepatic stellate cells 606 6 886 46 4 76 270 GALNT5
SE_02_154800580 chr2:157229253-157261977 Sample_02_1548 Gastrointestinal Stromal GIST-226 580 12 801 43 4 66 270 GALNT5
SE_02_131100885 chr2:157229278-157264953 Sample_02_1311 Bone marrow HDMSCs 885 8 885 46 4 76 270 GALNT5
SE_02_145400654 chr2:157229279-157264610 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 654 8 878 46 4 74 270 GALNT5
SE_02_141000389 chr2:157229406-157268810 Sample_02_1410 Brain GSC6 389 7 978 47 5 107 306 GALNT5
SE_02_150600573 chr2:157229814-157264338 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 573 7 857 46 4 74 270 GALNT5
SE_02_113700912 chr2:157229840-157261804 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 912 6 784 43 4 66 270 GALNT5
SE_02_017500869 chr2:157229905-157260820 Sample_02_0175 Lung IMR-90_Etoposide 869 7 758 40 3 59 270 GALNT5
SE_02_049800269 chr2:157230322-157264111 Sample_02_0498 Fetal lung IMR90 Senescent_1 269 16 843 46 4 72 270 GALNT5
SE_02_006300642 chr2:157232903-157265504 Sample_02_0063 Skin Keratinocytes 642 4 813 41 3 79 270 GALNT5
SE_02_026400942 chr2:157233017-157262084 Sample_02_0264 Skeletal muscle 7250-empty 942 3 719 38 3 66 270 GALNT5
SE_02_063800911 chr2:157233106-157264630 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 911 7 791 41 3 74 270 GALNT5
SE_02_041900621 chr2:157233130-157264744 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 621 6 793 41 3 75 270 GALNT5
SE_02_048101312 chr2:157233239-157263680 Sample_02_0481 Mammary gland MDA-MB231 1312 8 768 41 3 67 270 GALNT5
SE_02_077000924 chr2:157233284-157265554 Sample_02_0770 Ovary OVCA429_shLuc 924 11 809 40 3 79 270 GALNT5
SE_02_108500896 chr2:157233481-157261995 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 896 3 711 37 3 66 270 GALNT5
SE_02_005700531 chr2:157233796-157262016 Sample_02_0057 Mammary gland vHMEC 531 4 702 37 3 66 270 GALNT5
SE_02_048000880 chr2:157233924-157264748 Sample_02_0480 Gingival epithelial HGEP 880 7 779 40 3 75 270 GALNT5,ERMN
SE_01_004500306 chr2:157235572-157262270 Sample_01_0045 Mammary gland mammary-epithelial-cell 306 3 661 35 3 66 270 GALNT5
SE_01_002700579 chr2:157235605-157262229 Sample_01_0027 Prostate epithelial-cell-of-prostate 579 3 661 35 3 66 270 GALNT5
SE_02_072100125 chr2:157235747-157265873 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 125 14 754 37 3 79 270 GALNT5
SE_02_009900701 chr2:157235758-157269863 Sample_02_0099 Foreskin Epidermal-Stem-Cells_shDNMT3B 701 4 862 37 4 108 306 GALNT5
SE_02_064800990 chr2:157236007-157261893 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 990 5 646 33 3 66 270 GALNT5
SE_02_071200266 chr2:157242842-157269962 Sample_02_0712 Pancreas BxPC3_sgNEG 266 8 703 30 3 95 306 GALNT5
SE_02_071700118 chr2:157243038-157265838 Sample_02_0717 Pancreas HPAFII_GFP_DOX 118 7 584 27 2 66 270 GALNT5
SE_01_005400515 chr2:157244131-157273277 Sample_01_0054 Haematopoietic and lymphoid tissue OCI-LY3 515 4 745 31 3 95 306 GALNT5
SE_02_088400527 chr2:157244203-157265390 Sample_02_0884 Colon LoVo 527 3 548 26 2 63 270 GALNT5
SE_02_071100079 chr2:157244479-157265645 Sample_02_0711 Pancreas hN35_organoid 79 4 548 26 2 64 270 GALNT5
SE_02_137100504 chr2:157244492-157263650 Sample_02_1371 Pancreas Patu899S-untreated 504 6 500 26 2 52 270 GALNT5
SE_03_000100210 chr2:157244519-157262272 Sample_03_0001 Foreskin foreskin-keratinocyte 210 2 454 25 2 51 270 GALNT5
SE_02_071000082 chr2:157244590-157265119 Sample_02_0710 Pancreas hN34_organoid 82 6 535 26 2 61 270 GALNT5
SE_02_071500464 chr2:157244698-157262709 Sample_02_0715 Pancreas SUIT2_TP63dN 464 2 455 25 2 52 270 GALNT5
SE_02_125400822 chr2:157244765-157262704 Sample_02_1254 Bladder Bladder tumor Basal1 822 3 454 25 2 52 270 GALNT5
SE_02_070900349 chr2:157244801-157266547 Sample_02_0709 Pancreas hT85_organoid 349 5 566 27 2 64 270 GALNT5
SE_02_105500293 chr2:157244853-157265521 Sample_02_1055 Esophagus KYAE1 293 3 539 26 2 64 270 GALNT5
SE_02_105400635 chr2:157244965-157263431 Sample_02_1054 Esophagus SKGT4 635 3 482 25 2 52 270 GALNT5
SE_02_132800367 chr2:157244987-157265135 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 367 4 525 26 2 61 270 GALNT5
SE_02_071300605 chr2:157245011-157270201 Sample_02_0713 Pancreas BxPC3_sgTP63 605 8 659 29 3 93 306 GALNT5
SE_02_070400089 chr2:157245044-157264979 Sample_02_0704 Pancreas HPAFII WT 89 8 522 26 2 61 270 GALNT5
SE_02_127100651 chr2:157245113-157265683 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 651 5 535 26 2 64 270 GALNT5
SE_02_088601448 chr2:157245163-157264792 Sample_02_0886 Skin foreskin_ p63KLF4 1448 2 513 26 2 60 270 GALNT5
SE_02_079700197 chr2:157245172-157265826 Sample_02_0797 Brain PNMNK1 197 5 536 27 2 64 270 GALNT5
SE_03_000300315 chr2:157245178-157262088 Sample_03_0003 Foreskin foreskin-keratinocyte-calcium5.5day 315 2 435 23 2 51 270 GALNT5
SE_02_076700766 chr2:157245385-157266076 Sample_02_0767 Ovary OVCA429 766 10 535 27 2 62 270 GALNT5
SE_02_035400736 chr2:157245391-157280000 Sample_02_0354 Colon Colo205 736 4 930 41 3 92 306 GALNT5,ERMN
SE_02_070700328 chr2:157245396-157269662 Sample_02_0707 Pancreas BxPC3 WT 328 10 632 27 3 91 306 GALNT5
SE_02_071900427 chr2:157245420-157262714 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 427 3 437 25 2 50 270 GALNT5
SE_02_136600839 chr2:157245446-157264889 Sample_02_1366 Pancreas BxPC3-untreated 839 6 507 26 2 58 270 GALNT5
SE_02_070800274 chr2:157245447-157269255 Sample_02_0708 Pancreas hF3 organoid 274 5 622 27 3 90 306 GALNT5
SE_02_107500192 chr2:157245512-157272506 Sample_02_1075 Lymphoma BC-3 192 9 704 31 3 91 306 GALNT5
SE_02_047701050 chr2:157245627-157265351 Sample_02_0477 Colon intestinal epithelial organoids_139a 1050 5 515 26 2 58 270 GALNT5
SE_02_107400139 chr2:157245707-157272557 Sample_02_1074 Lymphoma BC-1 139 10 700 31 3 89 306 GALNT5
SE_02_153300589 chr2:157245992-157262398 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 589 3 413 25 2 48 270 GALNT5
SE_02_141900369 chr2:157246236-157266542 Sample_02_1419 Brain hNSC 369 2 524 27 2 60 270 GALNT5
SE_02_151200546 chr2:157247070-157264131 Sample_02_1512 Lung Purified AT2 cells 546 3 446 26 2 53 270 GALNT5
SE_02_122900260 chr2:157254649-157308599 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 260 24 1488 78 9 181 610 GALNT5,ERMN,NR4A2
SE_04_000200099 chr2:157255267-157273071 Sample_04_0002 Blood cold shocked K562 99 2 460 20 3 88 306 GALNT5,NR4A2
SE_02_146800071 chr2:157255527-157304600 Sample_02_1468 Blood HUDEP-2_WT 71 11 1339 64 9 162 564 GALNT5,ERMN
SE_02_103300244 chr2:157255564-157270538 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 244 3 390 18 3 87 306 GALNT5,NR4A2
SE_02_001600184 chr2:157255589-157268153 Sample_02_0016 Blood erythroblasts 184 1 322 16 3 75 306 GALNT5
SE_02_146700052 chr2:157255864-157310423 Sample_02_1467 Blood HUDEP-2_LRFKO 52 14 1501 78 9 184 640 GALNT5,ERMN
SE_02_146600143 chr2:157255877-157269196 Sample_02_1466 Blood HUDEP-2_BCL11AKO 143 1 345 16 3 86 306 GALNT5
SE_01_003900038 chr2:157256575-157266784 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 38 3 261 14 2 60 281 GALNT5
SE_02_054500058 chr2:157256615-157269979 Sample_02_0545 Bone marrow K562 WT 58 5 350 15 3 87 306 GALNT5,NR4A2
SE_04_000100177 chr2:157256652-157279602 Sample_04_0001 Blood heat shocked K562 177 3 624 28 3 88 306 GALNT5,ERMN,NR4A2
SE_02_113000165 chr2:157256686-157270434 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 165 2 360 16 3 87 306 GALNT5,NR4A2
SE_02_111600092 chr2:157256750-157269865 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 92 4 342 14 3 87 306 GALNT5,NR4A2
SE_02_109600296 chr2:157256805-157269599 Sample_02_1096 Blood CD34 Erythroid cells_Don003 296 3 335 13 3 87 306 GALNT5
SE_02_054700041 chr2:157256842-157265790 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 41 2 230 11 2 58 270 GALNT5
SE_02_136300321 chr2:157256908-157265963 Sample_02_1363 Blood Hudep2 321 2 232 12 2 58 270 GALNT5
SE_02_101800178 chr2:157256944-157267593 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 178 5 275 12 3 61 306 GALNT5
SE_02_109500534 chr2:157256987-157264778 Sample_02_1095 Blood CD34 Erythroid cells_Don002 534 2 202 11 2 54 270 GALNT5
SE_02_054600128 chr2:157257010-157265990 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 128 2 229 12 2 58 270 GALNT5
SE_02_098800733 chr2:157257223-157265718 Sample_02_0988 Blood K562_EPZ 733 4 221 8 2 55 270 GALNT5
SE_02_101900206 chr2:157258903-157264724 Sample_02_1019 Umbilical cord HUDEP2_Day 206 3 148 7 2 34 92 GALNT5
SE_02_142300303 chr2:157259200-157265665 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 303 6 164 7 2 35 62 GALNT5
Genomic distribution of SEs associated with GALNT5
Genome Browser

The strength of the tissue affected by the gene

Expression of GALNT5

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)