SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: FAM65C Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_009600046 chr20:50594247-50686206 Sample_02_0096 Mammary gland ZR-75-1_1 46 16 2894 175 1 136 1882 FAM65C,PARD6B,MIR645
SE_01_006900340 chr20:50610866-50725612 Sample_01_0069 Adrenal gland adrenal-gland 340 22 3402 223 4 126 685 FAM65C,PARD6B,MIR645
SE_02_105900622 chr20:50616919-50656290 Sample_02_1059 Bone A673_WT 622 8 1264 94 0 42 332 LOC100506175,FAM65C,MIR645,MIR1302-5
SE_02_147300615 chr20:50616924-50656290 Sample_02_1473 Bone A-673 615 8 1264 94 0 42 332 LOC100506175,FAM65C,MIR645,MIR1302-5
SE_02_086200529 chr20:50616939-50662360 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 529 12 1423 96 0 58 332 LOC100506175,FAM65C,MIR645,MIR1302-5
SE_02_004000275 chr20:50619522-50646904 Sample_02_0040 Embryo PFG 275 6 905 66 0 35 332 FAM65C,MIR645
SE_02_115100297 chr20:50622372-50633205 Sample_02_1151 Mammary gland MCF-7_UNTR 297 1 364 21 0 15 112 FAM65C,LOC100506175,MIR645,MIR1302-5
SE_02_000200217 chr20:50622401-50665484 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 217 3 1307 86 0 58 241 FAM65C,MIR645
SE_02_040300262 chr20:50622712-50681301 Sample_02_0403 Mammary gland T-47D_untreat 262 10 1755 117 1 66 241 FAM65C,MIR645
SE_01_004600078 chr20:50623813-50679194 Sample_01_0046 Mammary gland MCF-7 78 9 1669 109 1 66 241 FAM65C,MIR645
SE_02_009500546 chr20:50624026-50679124 Sample_02_0095 Mammary gland MDA-MB-468 546 9 1656 108 1 66 241 FAM65C,MIR645
SE_02_003200911 chr20:50624074-50692436 Sample_02_0032 Pancreas pancreatic-islets-M 911 12 2014 158 3 103 417 FAM65C,PARD6B,MIR645
SE_01_008500583 chr20:50624313-50692582 Sample_01_0085 Stomach stomach 583 12 2009 158 3 102 417 FAM65C,PARD6B,MIR645
SE_00_004200588 chr20:50624398-50691781 Sample_00_0042 Stomach stomach_30y 588 13 1993 156 3 102 417 FAM65C,PARD6B,MIR645
SE_02_016600445 chr20:50624568-50679876 Sample_02_0166 Mammary gland HCC1954_Parental 445 7 1657 110 1 65 241 FAM65C,MIR645
SE_02_016700527 chr20:50624568-50679876 Sample_02_0167 Mammary gland HCC1954_LCC2 527 7 1657 110 1 65 241 FAM65C,MIR645
SE_03_001301014 chr20:50625133-50681068 Sample_03_0013 Lung A549 1014 8 1671 114 1 62 241 FAM65C,MIR645
SE_01_009100287 chr20:50625191-50696173 Sample_01_0091 Uterus uterus 287 11 2084 163 3 99 417 FAM65C,PARD6B,MIR645
SE_02_003901183 chr20:50625257-50646360 Sample_02_0039 Embryo AFG 1183 7 695 52 0 22 241 FAM65C,MIR645
SE_02_003601332 chr20:50625290-50646349 Sample_02_0036 Embryo H7 1332 7 695 52 0 22 241 FAM65C,MIR645
SE_01_003600420 chr20:50625354-50671186 Sample_01_0036 Cervix HeLa-S3 420 7 1386 87 0 56 241 FAM65C,MIR645,PARD6B
SE_01_009200354 chr20:50625359-50696043 Sample_01_0092 Vagina vagina 354 19 2074 163 3 99 417 FAM65C,PARD6B,MIR645
SE_02_036400215 chr20:50625455-50657656 Sample_02_0364 Skeletal muscle CTR 215 2 988 79 0 38 241 FAM65C,MIR645
SE_02_076901027 chr20:50625574-50647475 Sample_02_0769 Ovary HEYA8 1027 8 709 55 0 31 241 LOC100506175,FAM65C,MIR645,MIR1302-5
SE_02_031500220 chr20:50625683-50656554 Sample_02_0315 Neuroblastoma TR14 220 6 946 77 0 38 241 FAM65C,MIR645
SE_02_094100302 chr20:50625758-50643138 Sample_02_0941 Brain T98G 302 4 587 45 0 22 241 FAM65C,MIR645,LOC100506175,MIR1302-5
SE_02_001900857 chr20:50625846-50692335 Sample_02_0019 Embryo Neural crest cells 857 14 1956 158 3 99 417 FAM65C,PARD6B,MIR645
SE_02_006800605 chr20:50625939-50650271 Sample_02_0068 Skin A375_DMSO 605 7 787 72 0 34 241 FAM65C,MIR645
SE_02_057100275 chr20:50625970-50653222 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 275 8 869 75 0 34 241 LOC100506175,FAM65C,MIR645,MIR1302-5
SE_02_057000509 chr20:50625997-50642974 Sample_02_0570 Brain LN229_10_mM_glucose 509 6 575 45 0 22 241 FAM65C,MIR645,LOC100506175,MIR1302-5
SE_02_067600143 chr20:50626333-50648025 Sample_02_0676 Embryo H1 hESC-derived neural progenitor cells_Smad_3hr 143 9 702 56 0 30 241 LOC100506175,FAM65C,MIR645,MIR1302-5
SE_02_099100542 chr20:50626442-50647832 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 542 4 693 55 0 30 241 LOC100506175,FAM65C,MIR645,MIR1302-5
SE_02_055800605 chr20:50626492-50643439 Sample_02_0558 iPSCs FX52 iPSCs mock 605 5 568 45 0 21 241 FAM65C,MIR645,LOC100506175,MIR1302-5
SE_02_067900327 chr20:50626625-50643188 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 327 7 560 45 0 21 241 FAM65C,MIR645,LOC100506175,MIR1302-5
SE_01_005700052 chr20:50627530-50717057 Sample_01_0057 Pancreas duct PANC-1 52 1 2583 183 3 107 417 FAM65C,PARD6B,MIR645
SE_02_031600530 chr20:50627531-50662149 Sample_02_0316 Neuroblastoma CHP212 530 6 1032 77 0 48 241 FAM65C,MIR645
SE_02_042300542 chr20:50627642-50649781 Sample_02_0423 Skin A375 542 8 716 70 0 30 241 FAM65C,MIR645
SE_02_001700574 chr20:50627664-50646182 Sample_02_0017 Embryo H9_ESC 574 5 604 50 0 21 241 FAM65C,MIR645
SE_02_021100484 chr20:50627772-50661957 Sample_02_0211 Lung MRC-5_NFD_1DPT 484 7 1013 77 0 48 241 FAM65C,MIR645
SE_02_055900614 chr20:50628508-50643499 Sample_02_0559 iPSCs FX52 iPSCs dC-T 614 3 488 40 0 21 241 FAM65C,MIR645,LOC100506175,MIR1302-5
SE_02_077101252 chr20:50628768-50647473 Sample_02_0771 Ovary OVCA429_shGRHL2 1252 6 588 50 0 30 241 LOC100506175,FAM65C,MIR645,MIR1302-5
SE_02_148100197 chr20:50628848-50711381 Sample_02_1481 Bone MIC 197 18 2385 177 3 107 417 LOC100506175,FAM65C,MIR1302-5,PARD6B,MIR645
SE_02_039800043 chr20:50629227-50693081 Sample_02_0398 Mammary gland MDA-MB-231-MCF-7 43 9 1849 153 3 98 417 FAM65C,PARD6B,MIR645
SE_02_021601062 chr20:50630860-50649879 Sample_02_0216 Skin NHEK_scramble 1062 7 604 64 0 28 169 FAM65C,MIR645
SE_02_045300720 chr20:50633311-50647663 Sample_02_0453 Neuroblastoma SJNB3 720 1 454 37 0 20 129 LOC100506175,FAM65C,MIR645,MIR1302-5
SE_02_005500292 chr20:50634595-50662613 Sample_02_0055 Lung IMR-90_Nutlin-3a 292 5 809 54 0 43 129 FAM65C,MIR645
SE_02_005400311 chr20:50635081-50662528 Sample_02_0054 Lung IMR-90_DMSO_1 311 6 786 52 0 43 129 FAM65C,MIR645
SE_00_001500180 chr20:50635099-50662446 Sample_00_0015 Lung IMR-90 180 5 784 51 0 43 129 FAM65C,MIR645
SE_00_004300503 chr20:50635160-50692847 Sample_00_0043 Stomach stomach_96d 503 12 1660 130 3 88 305 FAM65C,PARD6B,MIR645
SE_00_003100287 chr20:50635250-50686256 Sample_00_0031 Placenta placenta 287 8 1486 105 1 51 129 FAM65C,PARD6B,MIR645
SE_02_032800428 chr20:50635824-50646993 Sample_02_0328 Embryo H9_naive 428 2 355 23 0 20 129 FAM65C
SE_00_002900563 chr20:50636166-50662573 Sample_00_0029 Ovary ovary 563 13 765 51 0 43 129 FAM65C
SE_02_015800585 chr20:50637726-50662397 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 585 4 714 47 0 32 0 FAM65C
SE_01_002900313 chr20:50637814-50661925 Sample_01_0029 Lung fibroblast-of-lung 313 6 695 47 0 27 0 FAM65C
SE_02_007900080 chr20:50639552-50680825 Sample_02_0079 Mammary gland T-47D_1 80 15 1164 76 1 40 0 FAM65C
SE_01_008200774 chr20:50639749-50692984 Sample_01_0082 Right lobe of liver right-lobe-of-liver 774 11 1496 121 3 77 176 PARD6B,FAM65C
SE_00_004100881 chr20:50641375-50680676 Sample_00_0041 Stomach stomach_3y 881 10 1108 74 1 40 0 FAM65C
SE_02_021000806 chr20:50641614-50662568 Sample_02_0210 Lung MRC-5_N_1DPT 806 5 567 41 0 32 0 FAM65C
SE_02_090701228 chr20:50641649-50695495 Sample_02_0907 Heart left ventricle_DCM_LV1223 1228 15 1505 123 3 77 176 LOC100506175,FAM65C,MIR1302-5,PARD6B
SE_01_005900459 chr20:50641731-50680928 Sample_01_0059 Lung PC-9 459 6 1107 75 1 40 0 FAM65C
SE_01_003700548 chr20:50641738-50701905 Sample_01_0037 Liver hepatocyte 548 12 1684 132 3 83 176 PARD6B,FAM65C
SE_02_119900359 chr20:50641999-50695816 Sample_02_1199 Brain GBM35 359 23 1502 121 3 77 176 LOC100506175,FAM65C,MIR1302-5,PARD6B
SE_02_020800073 chr20:50642106-50690186 Sample_02_0208 Stomach YCC3 73 13 1363 111 2 67 0 PARD6B,FAM65C
SE_02_020200069 chr20:50642128-50690996 Sample_02_0202 Stomach YCC7 69 13 1381 115 3 69 33 PARD6B,FAM65C
SE_02_020700583 chr20:50644393-50650466 Sample_02_0207 Stomach FU97 583 3 175 26 0 12 0 FAM65C
SE_02_037000657 chr20:50644667-50657259 Sample_02_0370 Skeletal muscle RH4 657 2 346 31 0 16 0 FAM65C
SE_02_019300164 chr20:50644732-50682513 Sample_02_0193 Kidney Patient_x750N 164 3 1072 71 1 40 0 PARD6B,FAM65C
SE_02_019700224 chr20:50644735-50646777 Sample_02_0197 Stomach SNU1750 224 1 59 5 0 1 0 FAM65C
SE_02_146400085 chr20:50654729-50693598 Sample_02_1464 Ovary CAOV4 85 15 1084 83 3 65 176 LOC100506175,FAM65C,MIR1302-5,PARD6B
SE_01_010100590 chr20:50654890-50690594 Sample_01_0101 Pancreas pancreas_54y 590 13 1018 79 3 57 0 LOC100506175,FAM65C,MIR1302-5,PARD6B
SE_02_081900540 chr20:50655819-50683724 Sample_02_0819 Ovary Mucinous ovarian cancer 540 11 801 48 1 24 0 LOC100506175,FAM65C,MIR1302-5,PARD6B
SE_02_146500197 chr20:50656485-50680834 Sample_02_1465 Ovary CAOV4cis 197 13 699 36 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_098900158 chr20:50657043-50683875 Sample_02_0989 Kidney kidney cortex_WT 158 1 771 47 1 24 0 LOC100506175,FAM65C,MIR1302-5,PARD6B
SE_02_136700249 chr20:50657290-50692871 Sample_02_1367 Pancreas Capan1-untreated 249 13 1005 80 3 61 176 LOC100506175,FAM65C,MIR1302-5,PARD6B
SE_02_071300830 chr20:50657599-50689923 Sample_02_0713 Pancreas BxPC3_sgTP63 830 10 921 73 2 40 0 LOC100506175,FAM65C,MIR1302-5,PARD6B
SE_02_123000216 chr20:50657804-50680912 Sample_02_1230 Lung PC9 216 9 664 34 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_049100636 chr20:50657851-50690729 Sample_02_0491 Pharyng Detroit 562-Control 636 8 951 77 3 53 0 LOC100506175,FAM65C,MIR1302-5,PARD6B
SE_02_123300250 chr20:50657956-50680771 Sample_02_1233 Lung PC9_miR-4497 mimic 250 10 655 34 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_123200195 chr20:50658120-50680642 Sample_02_1232 Lung PC9_siMED13L-2 195 14 645 34 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_123100264 chr20:50658257-50680319 Sample_02_1231 Lung PC9_siMED13L-1 264 11 638 33 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_062400366 chr20:50658268-50679024 Sample_02_0624 Mammary gland TAMR_VEH 366 4 607 29 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_076601291 chr20:50658292-50681123 Sample_02_0766 Ovary PEO1 1291 19 656 35 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_077000709 chr20:50658299-50682527 Sample_02_0770 Ovary OVCA429_shLuc 709 18 703 39 1 24 0 LOC100506175,FAM65C,MIR1302-5,PARD6B
SE_02_062300362 chr20:50658330-50679031 Sample_02_0623 Mammary gland TAMR_E2 362 6 605 29 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_115800004 chr20:50658352-50745209 Sample_02_1158 Mammary gland MCF7_siYTHDC1_E2 4 9 2399 161 4 171 412 LOC100506175,PARD6B,FAM65C,MIR1302-5,BCAS4
SE_02_136000623 chr20:50658353-50680620 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 623 12 641 34 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_081000364 chr20:50658368-50681126 Sample_02_0810 Mammary gland T47D noSerum 364 13 654 35 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_076700432 chr20:50658388-50681152 Sample_02_0767 Ovary OVCA429 432 20 656 35 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_052700119 chr20:50658397-50680549 Sample_02_0527 Mammary gland MCF7_WT 119 14 637 33 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_123400195 chr20:50658406-50681176 Sample_02_1234 Mammary gland T47D_Full 195 12 658 35 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_105200223 chr20:50658443-50679513 Sample_02_1052 Esophagus JH-EsoAd1 223 14 611 30 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_077800111 chr20:50658474-50680909 Sample_02_0778 Mammary gland MCF7_FASR 111 7 647 34 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_108900288 chr20:50658540-50681340 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 288 11 655 35 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_094700090 chr20:50658610-50692628 Sample_02_0947 Tongue Cal27 90 5 963 79 3 61 176 LOC100506175,FAM65C,MIR1302-5,PARD6B
SE_02_094801006 chr20:50658654-50691381 Sample_02_0948 Pharyng Detroit562 1006 6 938 77 3 54 117 LOC100506175,FAM65C,MIR1302-5,PARD6B
SE_02_108600323 chr20:50658744-50681180 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 323 8 647 35 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_109100234 chr20:50658775-50680919 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 234 8 636 35 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_109000272 chr20:50658783-50681079 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 272 12 638 35 1 24 0 LOC100506175,FAM65C,MIR1302-5
SE_02_056600139 chr20:50659201-50680218 Sample_02_0566 Mammary gland MCF7L-P_E2_24h 139 10 606 33 1 17 0 LOC100506175,FAM65C,MIR1302-5
SE_02_021800021 chr20:50659622-50693510 Sample_02_0218 Mammary gland MCF-7_PMA 21 6 955 80 3 54 176 PARD6B,FAM65C
SE_02_153901038 chr20:50660302-50689975 Sample_02_1539 Nasopharyngeal C666-1 1038 12 859 73 2 30 0 FAM65C,MIR1302-5,LOC100506175,PARD6B
SE_02_099100681 chr20:50660486-50695171 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 681 8 981 82 3 50 176 FAM65C,MIR1302-5,LOC100506175,PARD6B
SE_02_113000750 chr20:50660875-50693579 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 750 11 936 80 3 50 176 FAM65C,MIR1302-5,LOC100506175,PARD6B
SE_02_056500121 chr20:50660977-50680192 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 121 8 568 33 1 13 0 FAM65C,MIR1302-5,LOC100506175
SE_02_077700095 chr20:50661003-50678820 Sample_02_0777 Mammary gland MCF7_TAMR 95 3 535 28 1 13 0 FAM65C,MIR1302-5,LOC100506175
SE_02_019400254 chr20:50661019-50693040 Sample_02_0194 Kidney Patient_x750T 254 5 919 79 3 50 176 PARD6B,FAM65C
SE_02_152600405 chr20:50661332-50681507 Sample_02_1526 Lung PC9 DMSO 405 8 597 35 1 13 0 FAM65C,MIR1302-5,LOC100506175
SE_02_102500626 chr20:50661366-50691630 Sample_02_1025 Esophagus KYSE150 626 8 879 77 3 49 176 FAM65C,MIR1302-5,LOC100506175,PARD6B
SE_04_000100109 chr20:50661405-50745625 Sample_04_0001 Blood heat shocked K562 109 14 2343 161 4 160 412 PARD6B,FAM65C,MIR1302-5,BCAS4,LOC100506175
SE_02_027200128 chr20:50665488-50680115 Sample_02_0272 Kidney 20431713T 128 3 425 29 1 8 0 FAM65C
SE_02_085200324 chr20:50668082-50674291 Sample_02_0852 Mammary gland MCF7L-P 324 1 181 8 1 5 0 FAM65C,LOC100506175
SE_02_115900327 chr20:50668082-50674291 Sample_02_1159 Mammary gland MCF7 327 1 181 8 1 5 0 FAM65C,LOC100506175
SE_02_099000244 chr20:50669707-50711387 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 244 11 1167 96 3 52 176 FAM65C,LOC100506175,PARD6B
SE_02_005100138 chr20:50670014-50682820 Sample_02_0051 Mammary gland MCF-7_EtOH 138 2 356 32 1 6 0 PARD6B,FAM65C
SE_02_021700020 chr20:50670139-50681191 Sample_02_0217 Mammary gland MCF-7_NS 20 4 303 28 1 6 0 FAM65C
SE_02_153800190 chr20:50670310-50747597 Sample_02_1538 Mammary gland MDA-MB-231 190 15 2110 155 5 163 412 PARD6B,FAM65C,BCAS4,LOC100506175
SE_02_061500705 chr20:50675078-50692843 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 705 5 486 62 2 40 176 FAM65C,LOC100506175,PARD6B
SE_02_106700344 chr20:50676386-50694967 Sample_02_1067 Bone SJSA-1 344 6 492 60 2 37 176 FAM65C,LOC100506175,PARD6B
SE_02_147500451 chr20:50679556-50711520 Sample_02_1475 Bone CHLA-25 451 4 900 73 2 46 176 FAM65C,LOC100506175,PARD6B
SE_02_128000917 chr20:50679798-50695196 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 917 4 414 52 2 37 176 FAM65C,LOC100506175,PARD6B
SE_02_155700495 chr20:50680019-50692729 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 495 4 353 47 2 37 176 FAM65C,LOC100506175,PARD6B
SE_02_148200494 chr20:50688014-50693811 Sample_02_1482 Bone POE 494 1 144 17 2 28 176 FAM65C,LOC100506175,PARD6B
SE_02_082000621 chr20:50688619-50693627 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 621 1 126 14 1 28 176 FAM65C,LOC100506175,PARD6B
SE_02_103200448 chr20:50694109-50726410 Sample_02_1032 Head and neck SCC1 JQ1 448 14 916 43 1 17 0 LOC100506175,FAM65C,PARD6B
SE_02_057000852 chr20:50694214-50703777 Sample_02_0570 Brain LN229_10_mM_glucose 852 4 287 11 0 9 0 LOC100506175,FAM65C,PARD6B
Genomic distribution of SEs associated with FAM65C
Genome Browser

The strength of the tissue affected by the gene

Expression of FAM65C

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)