SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000177706
Gene: FAM20C Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:192571-260772 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_000600858 chr7:101856-130682 Sample_00_0006 Blood CD14-positive-monocyte 858 5 1341 146 4 0 0 FAM20C,LOC442497
SE_01_007900857 chr7:115065-195258 Sample_01_0079 Peyers patch Peyers-patch 857 10 3486 331 3 63 1216 FAM20C
SE_00_004300792 chr7:115203-175608 Sample_00_0043 Stomach stomach_96d 792 9 2619 251 2 14 857 FAM20C
SE_00_002900824 chr7:128951-150280 Sample_00_0029 Ovary ovary 824 6 801 64 0 0 211 FAM20C
SE_02_021500295 chr7:141302-160010 Sample_02_0215 Skin NHEK_siGRHL3 295 3 739 80 0 0 857 FAM20C
SE_02_043900317 chr7:167904-197466 Sample_02_0439 Bone Hu09 317 14 1280 112 1 68 457 FAM20C,LOC100507642
SE_02_155300169 chr7:174139-241570 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 169 26 2494 174 2 87 985 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_036700244 chr7:174162-232484 Sample_02_0367 Skeletal muscle NS129 244 9 2493 154 2 87 985 FAM20C
SE_02_036800415 chr7:174179-201357 Sample_02_0368 Skeletal muscle NS134 415 5 1171 97 2 72 457 FAM20C
SE_02_156000625 chr7:174307-236368 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 625 14 2488 165 2 87 985 FAM20C,LOC100507642
SE_02_155900164 chr7:174319-237005 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 164 16 2488 169 2 87 985 FAM20C,LOC100507642
SE_02_119900017 chr7:177190-266880 Sample_02_1199 Brain GBM35 17 29 3592 219 2 118 2085 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_110600298 chr7:187027-254256 Sample_02_1106 Brain NGP 298 39 2445 154 2 84 1359 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_001700607 chr7:188086-223747 Sample_02_0017 Embryo H9_ESC 607 6 1497 66 2 61 545 FAM20C
SE_02_117700059 chr7:190815-245843 Sample_02_1177 Brain GBM05 59 12 1824 116 1 68 1016 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_040200360 chr7:190921-229480 Sample_02_0402 Mammary gland SUM159PT-ZR-75-1 360 11 1577 72 1 61 928 FAM20C
SE_02_141600336 chr7:190996-272142 Sample_02_1416 Brain SF9402 336 18 3199 165 1 107 2085 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_085700148 chr7:191066-241179 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 148 11 1710 101 1 68 985 FAM20C,LOC100507642,WI2-2373I1.2
SE_00_001400511 chr7:191356-221044 Sample_00_0014 Heart left ventricle heart-left-ventricle 511 3 1258 55 1 61 545 FAM20C
SE_02_119600155 chr7:191735-241430 Sample_02_1196 Brain GBM32 155 12 1684 99 1 67 985 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_095300046 chr7:191756-258394 Sample_02_0953 Brain H3.3K27M_1840 46 24 2457 145 1 95 1684 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_119700056 chr7:191796-258070 Sample_02_1197 Brain GBM33 56 22 2435 145 1 95 1684 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_119300330 chr7:191807-241382 Sample_02_1193 Brain GBM27 330 9 1682 99 1 67 985 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_078900053 chr7:191818-247470 Sample_02_0789 Brain 3752 53 11 1872 117 1 70 1226 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_059400440 chr7:191830-247492 Sample_02_0594 iPSC-derived neural progenitors 440 14 1872 117 1 70 1226 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_005000107 chr7:191992-232050 Sample_02_0050 Skin BJ 107 16 1650 71 1 67 985 FAM20C
SE_02_117400051 chr7:192549-247562 Sample_02_1174 Brain GBM02 51 20 1863 116 1 64 1226 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_085300211 chr7:193609-267046 Sample_02_0853 Mammary gland MCF7L-TamR 211 23 2888 156 1 83 1837 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_098900980 chr7:194465-265459 Sample_02_0989 Kidney kidney cortex_WT 980 25 2778 150 1 73 1726 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_108300494 chr7:198766-264453 Sample_02_1083 Macula macula 494 15 2518 138 0 64 1628 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_056900564 chr7:198872-245977 Sample_02_0569 Periodontal ligament mesenchymal stem cell 564 19 1529 95 0 25 600 FAM20C,LOC100507642,WI2-2373I1.2
SE_02_119400323 chr7:199197-236864 Sample_02_1194 Brain GBM28 323 10 1410 74 0 22 528 FAM20C,LOC100507642
SE_02_114200078 chr7:204501-256839 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 78 12 1880 116 0 43 1124 FAM20C,WI2-2373I1.2
SE_02_103600436 chr7:205126-264331 Sample_02_1036 Mammary gland HCC70_XY018 436 32 2247 125 0 54 1628 FAM20C,WI2-2373I1.2
SE_02_103500601 chr7:205147-264430 Sample_02_1035 Mammary gland HCC70_Vehicle 601 33 2249 124 0 54 1628 FAM20C,WI2-2373I1.2
SE_02_116800830 chr7:206502-243592 Sample_02_1168 Biliary H69_TGF Vehicle_2 830 15 1112 72 0 15 528 FAM20C,WI2-2373I1.2
SE_02_138400789 chr7:207359-247457 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 789 8 1250 86 0 18 769 FAM20C,WI2-2373I1.2
SE_02_155400795 chr7:209314-236883 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 795 11 973 60 0 12 440 FAM20C
SE_02_119100236 chr7:209587-236915 Sample_02_1191 Brain GBM25 236 7 963 60 0 12 440 FAM20C,LOC442497
SE_02_085800679 chr7:209616-235983 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 679 7 960 56 0 12 440 FAM20C
SE_02_119500493 chr7:209714-241130 Sample_02_1195 Brain GBM29 493 11 958 63 0 12 440 FAM20C,WI2-2373I1.2
SE_02_118800068 chr7:209833-250550 Sample_02_1188 Brain GBM18 68 7 1286 96 0 26 814 FAM20C,WI2-2373I1.2
SE_02_119200034 chr7:209953-246081 Sample_02_1192 Brain GBM26 34 9 1060 77 0 12 542 FAM20C,WI2-2373I1.2
SE_02_114500785 chr7:210017-235946 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 785 10 942 53 0 12 440 FAM20C
SE_02_096700388 chr7:210069-236921 Sample_02_0967 Brain H3.3K27M_JN57 388 8 938 57 0 12 440 FAM20C
SE_02_116700962 chr7:213724-237278 Sample_02_1167 Biliary H69_TGF Vehicle_1 962 8 746 52 0 12 440 FAM20C
SE_02_094700399 chr7:213906-241639 Sample_02_0947 Tongue Cal27 399 5 730 57 0 12 440 FAM20C,WI2-2373I1.2
SE_02_057100541 chr7:213997-241333 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 541 9 728 57 0 12 440 FAM20C,WI2-2373I1.2
SE_02_120100119 chr7:214360-243842 Sample_02_1201 Brain GBM37 119 5 728 60 0 12 440 FAM20C,WI2-2373I1.2
SE_02_078000185 chr7:214409-245639 Sample_02_0780 Liver SMMC-7721 185 12 797 69 0 12 440 FAM20C,WI2-2373I1.2
SE_02_120000445 chr7:214458-236128 Sample_02_1200 Brain GBM36 445 8 696 46 0 12 440 FAM20C
SE_02_127800887 chr7:214478-236144 Sample_02_1278 Chordoma UCH1_DMSO_48h 887 7 694 46 0 12 440 FAM20C
SE_02_094200062 chr7:214521-232373 Sample_02_0942 Brain LN229 62 11 686 36 0 12 440 FAM20C
SE_02_057000589 chr7:214548-241385 Sample_02_0570 Brain LN229_10_mM_glucose 589 9 686 56 0 12 440 FAM20C,WI2-2373I1.2
SE_02_118300069 chr7:214550-241197 Sample_02_1183 Brain GBM12 69 6 685 55 0 12 440 FAM20C,WI2-2373I1.2
SE_02_118600860 chr7:214566-236032 Sample_02_1186 Brain GBM15 860 7 684 46 0 12 440 FAM20C
SE_02_063200375 chr7:214631-236935 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 375 7 679 49 0 12 440 FAM20C
SE_02_108600216 chr7:214632-237367 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 216 5 679 50 0 12 440 FAM20C
SE_02_155800279 chr7:214634-236424 Sample_02_1558 Gastrointestinal Stromal GIST-7_PDGFRA e18 279 8 679 46 0 12 440 FAM20C
SE_02_108700325 chr7:214679-237264 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 325 5 677 50 0 12 440 FAM20C
SE_02_154100703 chr7:214697-241716 Sample_02_1541 Nasopharyngeal HNE1 703 6 676 55 0 12 440 FAM20C,WI2-2373I1.2
SE_02_063300231 chr7:214776-237093 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 231 8 675 50 0 12 440 FAM20C
SE_02_141000631 chr7:214779-241664 Sample_02_1410 Brain GSC6 631 7 674 55 0 12 440 FAM20C,WI2-2373I1.2
SE_02_119800245 chr7:214831-236334 Sample_02_1198 Brain GBM34 245 11 669 46 0 12 440 FAM20C
SE_02_156500328 chr7:214904-236848 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 328 12 665 48 0 12 440 FAM20C,LOC100507642
SE_02_053301151 chr7:214927-236862 Sample_02_0533 Blood vessel Circle of Willis_54y 1151 6 665 48 0 12 440 FAM20C
SE_02_081000112 chr7:214940-240442 Sample_02_0810 Mammary gland T47D noSerum 112 10 664 50 0 12 440 FAM20C,WI2-2373I1.2
SE_02_121200545 chr7:215012-241435 Sample_02_1212 Brain GBM30 545 11 660 55 0 12 440 FAM20C,WI2-2373I1.2
SE_02_142500740 chr7:215014-235028 Sample_02_1425 Shoulder fibroblast_384 740 9 660 42 0 12 440 FAM20C
SE_02_121000042 chr7:215024-237039 Sample_02_1210 Brain GBM17 42 7 660 50 0 12 440 FAM20C
SE_02_097800131 chr7:215051-241318 Sample_02_0978 Brain 2168_IDH1 131 10 657 55 0 12 440 FAM20C,WI2-2373I1.2
SE_02_061400563 chr7:215138-236954 Sample_02_0614 Liposarcoma MLPS_T2 563 10 654 49 0 12 440 FAM20C
SE_02_117500313 chr7:215175-236638 Sample_02_1175 Brain GBM03 313 8 654 48 0 12 440 FAM20C
SE_02_118200081 chr7:215177-237242 Sample_02_1182 Brain GBM11 81 8 654 50 0 12 440 FAM20C
SE_02_079100025 chr7:215324-234897 Sample_02_0791 Brain 2455 25 9 648 41 0 12 440 FAM20C
SE_02_095400261 chr7:215437-237218 Sample_02_0954 Brain H3.3K27WT_2192 261 9 648 50 0 12 440 FAM20C
SE_02_096600594 chr7:215510-236692 Sample_02_0966 Brain H3.3K27M_JN29-BS3 594 15 647 48 0 12 440 FAM20C
SE_02_094100041 chr7:215537-241552 Sample_02_0941 Brain T98G 41 5 647 55 0 12 440 FAM20C,WI2-2373I1.2
SE_02_053400837 chr7:215716-236395 Sample_02_0534 Blood vessel Circle of Willis_60y 837 10 646 46 0 12 440 FAM20C,WI2-2373I1.2
SE_02_108200723 chr7:216765-264038 Sample_02_1082 Retina retina 723 16 1697 110 0 51 1540 FAM20C,WI2-2373I1.2
SE_02_079800076 chr7:218081-242831 Sample_02_0798 Brain 1919 76 5 574 57 0 12 440 FAM20C,WI2-2373I1.2
SE_02_085200517 chr7:218083-256499 Sample_02_0852 Mammary gland MCF7L-P 517 10 1231 98 0 38 953 FAM20C,WI2-2373I1.2
SE_02_115900519 chr7:218083-256499 Sample_02_1159 Mammary gland MCF7 519 10 1231 98 0 38 953 FAM20C,WI2-2373I1.2
SE_02_079900020 chr7:218366-241262 Sample_02_0799 Brain MESMN1 20 10 556 51 0 12 440 FAM20C,WI2-2373I1.2
SE_02_121100745 chr7:218471-236577 Sample_02_1211 Brain GBM21 745 13 553 44 0 12 440 FAM20C
SE_02_080100548 chr7:219177-235026 Sample_02_0801 Brain 2235 548 4 516 34 0 12 440 FAM20C
SE_02_154700079 chr7:219630-237356 Sample_02_1547 Gastrointestinal Stromal GIST-48B 79 8 498 42 0 12 440 FAM20C
SE_00_005100921 chr7:219892-244697 Sample_00_0051 Adrenal gland adrenal gland 30y 921 11 538 54 0 12 440 FAM20C,WI2-2373I1.2
SE_02_079500241 chr7:220045-242585 Sample_02_0795 Brain 1953 241 8 487 49 0 7 440 FAM20C,WI2-2373I1.2
SE_02_079000060 chr7:220650-234631 Sample_02_0790 Brain DI28 60 3 454 32 0 7 440 FAM20C
SE_02_154400491 chr7:227935-236693 Sample_02_1544 Gastrointestinal Stromal GIST-882 491 5 213 31 0 7 390 FAM20C
SE_01_011700532 chr7:228109-235945 Sample_01_0117 Lung fibroblast of lung 532 5 204 28 0 7 350 FAM20C
SE_02_062400410 chr7:232636-241584 Sample_02_0624 Mammary gland TAMR_VEH 410 2 0 19 0 0 0 FAM20C,WI2-2373I1.2
SE_02_080900223 chr7:232637-237706 Sample_02_0809 Mammary gland T47D Serum 223 1 0 14 0 0 0 FAM20C
SE_02_062300505 chr7:232803-241053 Sample_02_0623 Mammary gland TAMR_E2 505 2 0 17 0 0 0 FAM20C,WI2-2373I1.2
SE_02_123400355 chr7:233032-237492 Sample_02_1234 Mammary gland T47D_Full 355 1 0 13 0 0 0 FAM20C
SE_02_109200457 chr7:233106-237222 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 457 1 0 13 0 0 0 FAM20C
SE_02_109000377 chr7:233137-237298 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 377 1 0 13 0 0 0 FAM20C
SE_02_109300527 chr7:233156-237200 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 527 1 0 13 0 0 0 FAM20C
SE_02_108800575 chr7:233417-237322 Sample_02_1088 Mammary gland T47D_shCtrl_45min 575 1 0 12 0 0 0 FAM20C
SE_02_142100193 chr7:233461-236853 Sample_02_1421 Brain NHA 193 2 0 10 0 0 0 FAM20C
SE_02_109100329 chr7:233500-237265 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 329 1 0 11 0 0 0 FAM20C
SE_02_050900373 chr7:233752-237037 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 373 1 0 11 0 0 0 FAM20C,WI2-2373I1.2
SE_02_051100377 chr7:233785-237094 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 377 1 0 11 0 0 0 FAM20C,WI2-2373I1.2
SE_02_039600674 chr7:34935-232484 Sample_02_0396 Skin NHEK-D 674 52 8219 739 11 94 1842 FAM20C
SE_02_010100134 chr7:60968-152504 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 134 13 3906 415 7 0 601 FAM20C
SE_02_018000170 chr7:64299-117100 Sample_02_0180 melanoma CJM 170 6 2209 266 5 0 0 FAM20C
SE_02_006800054 chr7:64343-116932 Sample_02_0068 Skin A375_DMSO 54 10 2196 264 5 0 0 FAM20C
SE_02_042300245 chr7:71869-102841 Sample_02_0423 Skin A375 245 6 1228 162 2 0 0 FAM20C
SE_02_036300507 chr7:72317-90910 Sample_02_0363 Haematopoietic and lymphoid tissue 697 507 3 734 72 1 0 0 FAM20C
SE_02_025600076 chr7:80585-195567 Sample_02_0256 Peripheral blood MV411 76 20 4917 534 7 63 1243 FAM20C
SE_02_005600693 chr7:82258-102961 Sample_02_0056 Mammary gland HMEC 693 7 857 132 2 0 0 FAM20C
SE_02_010000314 chr7:84047-168104 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 314 13 3555 409 5 0 857 FAM20C
SE_02_011600295 chr7:84202-103120 Sample_02_0116 Mammary gland MDA-MB-231_untreat 295 2 754 120 1 0 0 FAM20C
SE_02_015100201 chr7:85191-103221 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 201 3 713 115 1 0 0 FAM20C
SE_02_011100722 chr7:85208-103111 Sample_02_0111 Ovaries IOE4 722 2 710 115 1 0 0 FAM20C
SE_02_000900143 chr7:85212-102541 Sample_02_0009 Kidney 786-O_wtVHL 143 12 684 114 1 0 0 FAM20C,PDGFA
SE_02_007300284 chr7:85654-103045 Sample_02_0073 Other 90-8TL_DMSO 284 3 688 114 1 0 0 FAM20C
SE_02_000500070 chr7:85804-103431 Sample_02_0005 Cervical cervical-cancer_KDM5C 70 2 691 113 1 0 0 FAM20C
SE_02_026900254 chr7:85822-91999 Sample_02_0269 Kidney HK-2 254 5 249 32 0 0 0 FAM20C,LOC442497
SE_02_027000715 chr7:85995-100497 Sample_02_0270 Kidney PCS-400 715 5 576 96 1 0 0 FAM20C,LOC442497
SE_02_007400311 chr7:86036-102974 Sample_02_0074 Other 90-8TL_PDJQ 311 2 675 111 1 0 0 FAM20C
SE_02_018100562 chr7:86149-116834 Sample_02_0181 melanoma COLO679 562 3 1255 185 4 0 0 FAM20C
SE_02_033700251 chr7:86226-121306 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 251 4 1499 212 4 0 0 FAM20C
SE_02_040200333 chr7:87138-116949 Sample_02_0402 Mammary gland SUM159PT-ZR-75-1 333 5 1225 184 4 0 0 FAM20C
SE_02_040500528 chr7:87263-102096 Sample_02_0405 Mammary gland ZR-75-30_KO 528 3 592 103 1 0 0 FAM20C
SE_02_040600384 chr7:87323-102555 Sample_02_0406 Mammary gland ZR-75-30_parental 384 6 616 107 1 0 0 FAM20C
SE_02_007200291 chr7:87949-93843 Sample_02_0072 Lung NCI-H82_DMSO 291 2 257 35 0 0 0 FAM20C,PRKAR1B
SE_02_003600832 chr7:88349-101986 Sample_02_0036 Embryo H7 832 4 550 97 1 0 0 FAM20C
SE_02_000600279 chr7:88370-90233 Sample_02_0006 Cervical cervical-cancer_parental 279 3 89 13 0 0 0 FAM20C
SE_02_010200618 chr7:88828-151332 Sample_02_0102 Peripheral blood Macrophages_GM-CSF_72h_IL4 618 9 2626 303 5 0 417 FAM20C
SE_01_002400518 chr7:89101-152319 Sample_01_0024 Blood CD14-positive-monocyte 518 8 2655 308 5 0 579 FAM20C
SE_00_001200612 chr7:91756-98778 Sample_00_0012 Embryo H1-hESC 612 4 282 60 1 0 0 FAM20C
SE_02_043900312 chr7_KI270804v1_alt:127320-156933 Sample_02_0439 Bone Hu09 312 14 0 0 0 0 0 FAM20C
SE_02_103601491 chr7_KI270804v1_alt:141707-153342 Sample_02_1036 Mammary gland HCC70_XY018 1491 2 0 0 0 0 0 FAM20C
SE_02_103501745 chr7_KI270804v1_alt:151152-153273 Sample_02_1035 Mammary gland HCC70_Vehicle 1745 1 0 0 0 0 0 FAM20C
SE_02_043900323 chr7_KI270899v1_alt:160317-189733 Sample_02_0439 Bone Hu09 323 14 0 0 0 0 0 FAM20C
SE_02_103601497 chr7_KI270899v1_alt:184052-186288 Sample_02_1036 Mammary gland HCC70_XY018 1497 1 0 0 0 0 0 FAM20C
SE_02_103501717 chr7_KI270899v1_alt:184074-186185 Sample_02_1035 Mammary gland HCC70_Vehicle 1717 1 0 0 0 0 0 FAM20C
Genomic distribution of SEs associated with FAM20C
Genome Browser

The strength of the tissue affected by the gene

Expression of FAM20C

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)