SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000163687
Gene: DNASE1L3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:58192257-58214697 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_007300064 chr3:58076965-58172338 Sample_02_0073 Other 90-8TL_DMSO 64 41 2835 226 11 483 4544 FLNB,DNASE1L3,ABHD6
SE_02_016800105 chr3:58088062-58166288 Sample_02_0168 Prostate LNCaP 105 8 2326 185 8 396 3754 FLNB,DNASE1L3
SE_02_116800680 chr3:58088147-58177781 Sample_02_1168 Biliary H69_TGF Vehicle_2 680 27 2668 215 8 451 4307 FLNB,DNASE1L3,ABHD6
SE_02_032500053 chr3:58095235-58254852 Sample_02_0325 Liver hepatocytes_d1 53 22 4681 508 10 540 5278 ABHD6,FLNB,DNASE1L3
SE_01_010100176 chr3:58100675-58176828 Sample_01_0101 Pancreas pancreas_54y 176 18 2293 194 7 421 4020 FLNB,DNASE1L3
SE_00_005800707 chr3:58101066-58120588 Sample_00_0058 Stomach stomach 34y 707 10 561 59 2 106 796 FLNB,DNASE1L3
SE_02_066400107 chr3:58101391-58167521 Sample_02_0664 Prostate LNCaP_DMSO 107 17 1994 170 7 370 3471 FLNB,DNASE1L3
SE_02_076400077 chr3:58101504-58174259 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 77 18 2191 186 7 416 4020 FLNB,DNASE1L3,ABHD6
SE_02_017000414 chr3:58134763-58166853 Sample_02_0170 Prostate LNCaP_R1881_DOX 414 5 964 68 1 193 1906 FLNB,DNASE1L3
SE_02_016900348 chr3:58134775-58166678 Sample_02_0169 Prostate LNCaP_R1881 348 5 959 66 1 193 1906 FLNB,DNASE1L3
SE_02_129600365 chr3:58135208-58182747 Sample_02_1296 Perigastric lymph node Perigastric lymph node 365 11 1429 117 1 259 2440 FLNB,DNASE1L3
SE_02_129700212 chr3:58135217-58178560 Sample_02_1297 Lung lung 212 17 1316 104 1 248 2440 FLNB,DNASE1L3,ABHD6
SE_02_066900508 chr3:58135378-58175568 Sample_02_0669 Prostate prostate cancer_DSG 508 9 1214 90 1 246 2440 FLNB,DNASE1L3,ABHD6
SE_02_067300236 chr3:58135578-58166396 Sample_02_0673 Prostate LNCAP_FA 236 7 932 65 1 192 1891 FLNB,DNASE1L3
SE_02_140700436 chr3:58135856-58173826 Sample_02_1407 Prostate LNCaP_R1881 4h 436 6 1147 84 1 235 2432 FLNB,DNASE1L3
SE_02_032700162 chr3:58141329-58254844 Sample_02_0327 Liver hepatocytes_d6 162 15 3311 388 3 311 3326 ABHD6,FLNB,DNASE1L3
SE_01_008200140 chr3:58141428-58254622 Sample_01_0082 Right lobe of liver right-lobe-of-liver 140 22 3305 387 3 311 3326 ABHD6,FLNB,DNASE1L3
SE_02_032600501 chr3:58142218-58194653 Sample_02_0326 Liver hepatocytes_d3 501 12 1596 156 1 227 2363 FLNB,DNASE1L3,ABHD6
SE_01_008000514 chr3:58143375-58176582 Sample_01_0080 Prostate prostate 514 5 1020 82 1 200 2118 FLNB,DNASE1L3,ABHD6
SE_02_016200203 chr3:58143686-58166323 Sample_02_0162 Prostate C4-2B_vehicle_24h 203 10 698 54 1 137 1511 FLNB,DNASE1L3,ABHD6
SE_01_006800205 chr3:58143778-58176143 Sample_01_0068 Prostate: derived from metastatic site: vertebral metastasis VCaP 205 5 990 80 1 192 2042 FLNB,DNASE1L3
SE_02_129900379 chr3:58143836-58178996 Sample_02_1299 Liver liver 379 11 1079 94 1 192 2042 FLNB,DNASE1L3,ABHD6
SE_02_051100513 chr3:58144290-58166157 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 513 6 676 53 1 135 1464 FLNB,DNASE1L3
SE_02_050900372 chr3:58144297-58166107 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 372 6 674 53 1 135 1458 FLNB,DNASE1L3
SE_02_051000317 chr3:58144415-58166262 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 317 6 678 53 1 136 1483 FLNB,DNASE1L3
SE_02_129800369 chr3:58144425-58178417 Sample_02_1298 Hilar lymph node Hilar lymph node 369 10 1053 93 1 191 2042 FLNB,DNASE1L3,ABHD6
SE_02_123600214 chr3:58144605-58173866 Sample_02_1236 Skin MKL1_virus_positive 214 11 899 72 1 180 2042 FLNB,DNASE1L3
SE_02_016300337 chr3:58145383-58151867 Sample_02_0163 Prostate C4-2B_SR2211_24h 337 4 227 13 1 54 438 FLNB,DNASE1L3
SE_01_008800955 chr3:58149694-58178191 Sample_01_0088 Tibial nerve tibial-nerve 955 4 850 76 1 149 1733 FLNB,DNASE1L3,ABHD6
SE_02_127300527 chr3:58156496-58178792 Sample_02_1273 Cervix HeLa 527 7 648 66 0 101 1220 FLNB,DNASE1L3,ABHD6
SE_02_003301194 chr3:58156861-58178952 Sample_02_0033 Pancreas pancreatic-islets-F 1194 4 638 65 0 100 1220 FLNB,DNASE1L3,ABHD6
SE_02_143200216 chr3:58157429-58260418 Sample_02_1432 Bone A673 STAG2 WT 216 36 2923 380 2 204 2318 ABHD6,DNASE1L3,FLNB,RPP14
SE_02_120100234 chr3:58158002-58180958 Sample_02_1201 Brain GBM37 234 8 667 65 0 105 1220 FLNB,DNASE1L3,ABHD6
SE_02_109900865 chr3:58159615-58178359 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 865 11 549 57 0 88 1191 FLNB,DNASE1L3,ABHD6
SE_02_002100649 chr3:58159919-58182082 Sample_02_0021 Colon V429 649 3 641 64 0 89 1148 FLNB,DNASE1L3
SE_00_001400064 chr3:58160221-58251260 Sample_00_0014 Heart left ventricle heart-left-ventricle 64 11 2634 337 2 162 2194 ABHD6,FLNB,DNASE1L3
SE_02_024000589 chr3:58160260-58181118 Sample_02_0240 Colon V429_2 589 3 610 63 0 87 1148 FLNB,DNASE1L3
SE_02_035800492 chr3:58160269-58181339 Sample_02_0358 Colon LS180 492 2 612 63 0 87 1148 FLNB,DNASE1L3,ABHD6
SE_02_047500290 chr3:58160589-58178392 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 290 7 530 55 0 76 1148 FLNB,DNASE1L3
SE_02_098801060 chr3:58160601-58178458 Sample_02_0988 Blood K562_EPZ 1060 11 533 55 0 76 1148 FLNB,DNASE1L3,ABHD6
SE_02_124200486 chr3:58160938-58183435 Sample_02_1242 Skin UISO_virus_negative 486 5 668 72 0 87 1148 FLNB,DNASE1L3,ABHD6
SE_02_003200623 chr3:58161606-58178960 Sample_02_0032 Pancreas pancreatic-islets-M 623 4 519 53 0 76 1148 FLNB,DNASE1L3,ABHD6
SE_02_151800591 chr3:58161668-58201235 Sample_02_1518 Umbilical vein HUVEC_Scr 591 17 1194 132 1 112 1461 DNASE1L3,FLNB,ABHD6
SE_02_104601716 chr3:58162001-58203261 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1716 14 1249 135 1 111 1477 DNASE1L3,FLNB,ABHD6
SE_02_141100121 chr3:58162039-58178753 Sample_02_1411 Colon KM12C 121 7 505 50 0 75 1148 FLNB,DNASE1L3
SE_02_127700282 chr3:58162127-58188833 Sample_02_1277 Prostate PC3_COMBO 282 8 807 90 0 93 1148 FLNB,ABHD6,DNASE1L3
SE_02_003900811 chr3:58162615-58176308 Sample_02_0039 Embryo AFG 811 3 410 36 0 74 1117 FLNB,DNASE1L3,ABHD6
SE_01_007100544 chr3:58162620-58176826 Sample_01_0071 Pancreas body-of-pancreas 544 2 424 37 0 74 1117 FLNB,DNASE1L3,ABHD6
SE_02_004800645 chr3:58162862-58217837 Sample_02_0048 Embryo endodermal CyT49_HE 645 6 1671 193 2 139 1874 FLNB,DNASE1L3,ABHD6
SE_02_004001181 chr3:58162889-58176658 Sample_02_0040 Embryo PFG 1181 2 412 37 0 74 1095 FLNB,DNASE1L3,ABHD6
SE_02_004500296 chr3:58163016-58189474 Sample_02_0045 Embryo endodermal CyT49_ES_D7 296 7 800 89 0 92 1072 FLNB,ABHD6,DNASE1L3
SE_00_003000185 chr3:58163132-58175617 Sample_00_0030 Pancreas pancreas 185 4 375 34 0 72 1055 FLNB,DNASE1L3,ABHD6
SE_02_075701045 chr3:58163874-58194261 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 1045 5 910 104 0 82 1098 DNASE1L3,FLNB,ABHD6
SE_00_005800791 chr3:58163955-58176989 Sample_00_0058 Stomach stomach 34y 791 8 386 34 0 63 947 FLNB,DNASE1L3,ABHD6
SE_02_004400279 chr3:58164007-58189282 Sample_02_0044 Embryo endodermal CyT49_ES_D5 279 4 762 85 0 81 931 FLNB,ABHD6,DNASE1L3
SE_02_047600644 chr3:58164950-58201353 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 644 12 1103 122 1 95 1106 DNASE1L3,FLNB,ABHD6
SE_01_003800341 chr3:58167631-58201591 Sample_01_0038 Liver HepG2 341 7 1026 114 1 83 878 FLNB,DNASE1L3,ABHD6
SE_00_005501038 chr3:58173742-58219225 Sample_00_0055 Spleen spleen 34y 1038 18 1392 169 2 76 777 DNASE1L3,ABHD6
SE_02_148900012 chr3:58175627-58263178 Sample_02_1489 Bone TC-106 12 36 2482 338 2 119 1098 ABHD6,DNASE1L3,RPP14
SE_02_078300297 chr3:58177591-58219181 Sample_02_0783 Blood MEC2 297 9 1271 160 2 65 777 DNASE1L3,ABHD6
SE_02_072900557 chr3:58178105-58217959 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 557 14 1218 154 2 65 777 DNASE1L3,ABHD6
SE_02_078200199 chr3:58178147-58234761 Sample_02_0782 Blood MEC1 199 14 1653 207 2 74 777 DNASE1L3,ABHD6
SE_02_075100041 chr3:58187616-58217926 Sample_02_0751 Lymphoma Rec-1_WO 41 13 922 108 2 47 777 DNASE1L3,ABHD6
SE_02_073500158 chr3:58188113-58218597 Sample_02_0735 Lymphoma PAR_Mantle cell lymphoma tissue_THZ1 158 9 927 109 2 47 777 DNASE1L3,ABHD6
SE_02_073400175 chr3:58188143-58218118 Sample_02_0734 Lymphoma PAR_Mantle cell lymphoma tissue_DMSO 175 7 917 106 2 47 777 DNASE1L3,ABHD6
SE_02_073200279 chr3:58188501-58217986 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 279 11 900 106 2 47 777 DNASE1L3,ABHD6
SE_02_075000283 chr3:58188662-58217689 Sample_02_0750 Lymphoma Rec-1_GSI 283 12 885 104 2 46 777 DNASE1L3,ABHD6
SE_02_073300284 chr3:58188746-58217893 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 284 10 892 105 2 47 777 DNASE1L3,ABHD6
SE_02_032000350 chr3:58191992-58250345 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 350 8 1659 229 2 68 1046 ABHD6,DNASE1L3
SE_02_032100461 chr3:58195292-58250308 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 461 7 1565 219 2 67 898 ABHD6,DNASE1L3
SE_02_012000123 chr3:58195557-58217901 Sample_02_0120 Haematopoietic and lymphoid tissue REC-1 123 6 690 84 2 46 629 DNASE1L3,ABHD6
SE_02_142901069 chr3:58195632-58216500 Sample_02_1429 Blood GM12878_WT 1069 6 648 80 2 44 629 DNASE1L3,ABHD6,RPP14
Genomic distribution of SEs associated with DNASE1L3
Genome Browser

The strength of the tissue affected by the gene

Expression of DNASE1L3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)