SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000173546
Gene: CSPG4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr15:75674322-75712848 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_043800072 chr15:75644784-75718878 Sample_02_0438 Bone HOS 72 20 2055 129 4 589 3685 SNX33,CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35
SE_02_116700115 chr15:75646282-75717102 Sample_02_1167 Biliary H69_TGF Vehicle_1 115 14 1970 123 3 583 3685 SNX33,CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35
SE_01_010200007 chr15:75646462-75716184 Sample_01_0102 Artery tibial artery 7 24 1954 121 3 564 3685 SNX33,CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35
SE_02_053400082 chr15:75646485-75717574 Sample_02_0534 Blood vessel Circle of Willis_60y 82 32 1974 123 3 586 3685 SNX33,CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35
SE_02_038000081 chr15:75646499-75717873 Sample_02_0380 Skeletal muscle RH18 81 10 1978 123 3 586 3685 SNX33,CSPG4,MIR4313,SNUPN,DNM1P35,IMP3,ODF3L1
SE_02_150300646 chr15:75646757-75718841 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 646 18 1985 122 4 588 3685 SNX33,CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35
SE_02_119600145 chr15:75646759-75716029 Sample_02_1196 Brain GBM32 145 23 1944 120 3 564 3685 SNX33,CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35
SE_02_096900134 chr15:75646855-75716658 Sample_02_0969 Brain H3.3K27M_PL637 134 17 1947 120 3 573 3685 SNX33,CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35
SE_02_021600015 chr15:75651269-75717445 Sample_02_0216 Skin NHEK_scramble 15 38 1880 117 3 495 3051 SNX33,CSPG4,MIR4313,SNUPN,DNM1P35,IMP3,ODF3L1
SE_02_110600386 chr15:75651274-75716786 Sample_02_1106 Brain NGP 386 23 1864 116 3 483 3051 SNX33,CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35
SE_02_114500037 chr15:75651589-75736573 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 37 54 2344 161 4 547 4285 SNX33,DNM1P35,ODF3L1,CSPG4,IMP3,SNUPN,MIR4313
SE_02_114200012 chr15:75651627-75732580 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 12 30 2239 143 4 539 4285 SNX33,DNM1P35,ODF3L1,CSPG4,IMP3,SNUPN,MIR4313
SE_02_055200262 chr15:75651953-75710542 Sample_02_0552 Other SYO1 shCt 262 25 1706 105 3 427 2885 SNX33,CSPG4,IMP3,ODF3L1,SNUPN,DNM1P35
SE_02_138400244 chr15:75652311-75710260 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 244 13 1691 103 3 427 2885 SNX33,CSPG4,IMP3,ODF3L1,SNUPN,DNM1P35
SE_02_087400082 chr15:75659039-75710621 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 82 15 1525 93 2 400 2472 CSPG4,IMP3,ODF3L1,SNUPN,DNM1P35,SNX33
SE_02_150200824 chr15:75660701-75718841 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 824 16 1652 101 3 443 2638 CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35,SNX33
SE_02_156500030 chr15:75660981-75734358 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 30 28 2033 134 3 502 3872 CSPG4,DNM1P35,ODF3L1,IMP3,SNUPN,MIR4313,SNX33
SE_02_133700110 chr15:75666896-75705241 Sample_02_1337 Lung NCI-H1299-wtSMARCA4_Dox_SAHA 110 9 1147 74 2 331 2472 CSPG4,IMP3,ODF3L1,SNUPN,DNM1P35,SNX33
SE_02_133100074 chr15:75667123-75738970 Sample_02_1331 Blood Molm13_CTRL 74 11 1994 149 3 474 4110 CSPG4,DNM1P35,ODF3L1,IMP3,SNUPN,MIR4313,SNX33
SE_02_085700106 chr15:75667201-75713782 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 106 8 1358 85 2 379 2638 CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35,SNX33
SE_02_116200450 chr15:75669551-75738335 Sample_02_1162 Stomach YCC11 450 26 1901 135 3 474 3903 CSPG4,DNM1P35,ODF3L1,IMP3,SNUPN,MIR4313,SNX33
SE_02_036300163 chr15:75672783-75717085 Sample_02_0363 Haematopoietic and lymphoid tissue 697 163 6 1281 74 1 400 2638 CSPG4,MIR4313,SNX33,SNUPN,DNM1P35,IMP3,ODF3L1
SE_02_118200065 chr15:75673006-75715949 Sample_02_1182 Brain GBM11 65 9 1256 71 1 381 2638 CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35,SNX33
SE_02_117900034 chr15:75673062-75715816 Sample_02_1179 Brain GBM08 34 7 1250 71 1 381 2638 CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35,SNX33
SE_02_117800075 chr15:75673118-75714019 Sample_02_1178 Brain GBM07 75 5 1200 66 1 369 2638 CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35,SNX33
SE_02_124900065 chr15:75673351-75707266 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 65 9 1032 55 1 328 2472 CSPG4,IMP3,ODF3L1,SNUPN,DNM1P35,SNX33
SE_02_114400012 chr15:75674374-75722012 Sample_02_1144 Peripheral nerve S462_PRC2 mutant 12 11 1338 73 1 411 2583 CSPG4,IMP3,ODF3L1,SNUPN,MIR4313,DNM1P35,SNX33
SE_02_000400112 chr15:75675893-75733228 Sample_02_0004 Mammary gland MCF-7_10Gygamma_7.5h 112 17 1593 98 1 446 3453 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33,SNUPN,IMP3
SE_02_027500145 chr15:75681189-75739708 Sample_02_0275 Retina FW14 145 9 1632 117 1 384 3237 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33,IMP3
SE_02_106200002 chr15:75681840-75712842 Sample_02_1062 Glioma TS543 glioma cells 2 20 932 46 0 283 1610 CSPG4,IMP3,ODF3L1,MIR4313,DNM1P35,SNX33
SE_02_132201434 chr15:75683593-75704696 Sample_02_1322 Connective Tissue HT1080_WT 1434 4 669 35 0 231 1233 CSPG4,ODF3L1,SNX33,DNM1P35,IMP3
SE_02_025600041 chr15:75686316-75739398 Sample_02_0256 Peripheral blood MV411 41 8 1448 109 1 361 2675 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33,IMP3
SE_02_037400095 chr15:75686320-75731499 Sample_02_0374 Skeletal muscle RMS209 95 8 1208 73 1 344 2233 ODF3L1,CSPG4,MIR4313,SNX33,DNM1P35,IMP3
SE_02_018300101 chr15:75686342-75713480 Sample_02_0183 Skin SKMEL2 101 3 780 41 0 264 1127 CSPG4,MIR4313,SNX33,DNM1P35,IMP3,ODF3L1
SE_02_095800068 chr15:75686456-75739519 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 68 11 1445 109 1 361 2691 CSPG4,DNM1P35,ODF3L1,IMP3,MIR4313,SNX33
SE_02_125200098 chr15:75686499-75721105 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 98 12 939 49 1 303 1127 CSPG4,IMP3,ODF3L1,MIR4313,DNM1P35,SNX33
SE_02_044200649 chr15:75686528-75732910 Sample_02_0442 Bone MG63.3 649 19 1248 79 1 355 2361 CSPG4,DNM1P35,ODF3L1,IMP3,MIR4313,SNX33
SE_02_155400424 chr15:75686530-75717530 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 424 12 869 48 0 300 1127 CSPG4,IMP3,ODF3L1,MIR4313,DNM1P35,SNX33
SE_02_155800053 chr15:75686554-75733292 Sample_02_1558 Gastrointestinal Stromal GIST-7_PDGFRA e18 53 15 1253 80 1 357 2361 CSPG4,DNM1P35,ODF3L1,IMP3,MIR4313,SNX33
SE_02_058200327 chr15:75686584-75706497 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 327 3 598 30 0 227 961 CSPG4,ODF3L1,SNX33,DNM1P35,IMP3
SE_02_112100694 chr15:75686619-75708547 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 694 10 657 36 0 231 961 CSPG4,ODF3L1,SNX33,DNM1P35,IMP3
SE_02_117600091 chr15:75686669-75716561 Sample_02_1176 Brain GBM04 91 6 848 46 0 287 1127 CSPG4,IMP3,ODF3L1,MIR4313,DNM1P35,SNX33
SE_02_048001116 chr15:75686742-75708756 Sample_02_0480 Gingival epithelial HGEP 1116 11 669 37 0 231 961 CSPG4,ODF3L1,SNX33,DNM1P35,IMP3
SE_02_125100073 chr15:75687151-75708715 Sample_02_1251 Bone marrow RS4_11_AZD1775 _10h 73 10 656 36 0 230 949 CSPG4,ODF3L1,SNX33,DNM1P35,IMP3
SE_02_062200164 chr15:75688399-75727432 Sample_02_0622 Blood EOL1_Naive 164 18 1036 59 1 287 1350 CSPG4,ODF3L1,IMP3,MIR4313,DNM1P35,SNX33
SE_02_133000712 chr15:75690182-75716796 Sample_02_1330 Blood AMU-AML1 712 10 704 42 0 185 446 CSPG4,IMP3,ODF3L1,MIR4313,DNM1P35,SNX33
SE_02_084100535 chr15:75690991-75706745 Sample_02_0841 Blood THP-1_untr 535 1 425 25 0 106 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_125000092 chr15:75691015-75706132 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 92 6 402 25 0 100 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_096200027 chr15:75691160-75714189 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 27 1 604 36 0 145 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_014400146 chr15:75691174-75712467 Sample_02_0144 Peripheral blood MV411_DMSO 146 2 565 35 0 138 101 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_097000027 chr15:75691364-75714391 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 27 1 606 37 0 147 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_099300474 chr15:75691599-75706108 Sample_02_0993 Blood MOLM-13_empty 474 8 384 24 0 99 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_033300165 chr15:75691694-75713413 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 165 2 570 35 0 142 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_099400315 chr15:75691810-75706642 Sample_02_0994 Blood MOLM13_SIK3TQ 315 3 399 22 0 106 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_109800191 chr15:75691856-75712410 Sample_02_1098 Blood THP1_DMSO_noPMA 191 5 546 32 0 138 101 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_057700405 chr15:75691873-75706476 Sample_02_0577 Blood MOLM13_empty 405 2 393 22 0 106 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_046100150 chr15:75691894-75706165 Sample_02_0461 Blood MV-4-11-B cells 150 5 379 22 0 102 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_01_008600075 chr15:75691921-75719564 Sample_01_0086 Thoracic aorta thoracic-aorta 75 1 690 41 1 181 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_058100853 chr15:75691982-75706248 Sample_02_0581 Blood MOLM13_empty_HG 853 3 380 22 0 103 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_033400291 chr15:75692003-75717527 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 291 3 659 40 0 179 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_099500378 chr15:75692035-75706130 Sample_02_0995 Blood MOLM-13_empty vector 378 7 375 22 0 100 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_121200033 chr15:75692047-75707068 Sample_02_1212 Brain GBM30 33 1 408 22 0 106 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_01_007800129 chr15:75692068-75714731 Sample_01_0078 Heart left ventricle heart-left-ventricle 129 1 597 35 0 149 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_036000120 chr15:75692109-75704618 Sample_02_0360 Haematopoietic and lymphoid tissue SEM 120 3 335 22 0 95 101 CSPG4,ODF3L1,DNM1P35,SNX33
SE_02_033200199 chr15:75692125-75717504 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 199 3 657 40 0 179 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_025500071 chr15:75692151-75712917 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 71 3 550 32 0 141 224 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_033700532 chr15:75692163-75706951 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 532 1 402 22 0 106 101 CSPG4,ODF3L1,DNM1P35,SNX33
SE_02_025300127 chr15:75692246-75739766 Sample_02_0253 Brain BE2C_DMSO 127 5 1233 102 1 240 1840 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_02_033100202 chr15:75692258-75717842 Sample_02_0331 Haematopoietic and lymphoid tissue MOLM14_untreated 202 4 654 40 0 179 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_01_007700114 chr15:75692262-75714590 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 114 1 585 35 0 149 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_079700149 chr15:75692264-75717780 Sample_02_0797 Brain PNMNK1 149 15 653 40 0 179 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_044600289 chr15:75692267-75707207 Sample_02_0446 Bone osteosarcoma tumor P2 289 1 405 22 0 106 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_01_007300047 chr15:75692277-75714487 Sample_01_0073 Coronary artery coronary-artery 47 1 583 35 0 148 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_01_009200288 chr15:75692304-75714294 Sample_01_0092 Vagina vagina 288 1 576 33 0 146 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_096500286 chr15:75692328-75715274 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 286 14 602 37 0 157 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_033500246 chr15:75692363-75713666 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 246 3 559 33 0 144 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_035900201 chr15:75692381-75705322 Sample_02_0359 Colon Colo741 201 1 342 22 0 96 101 CSPG4,ODF3L1,DNM1P35,SNX33
SE_02_096300299 chr15:75692389-75713678 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 299 2 559 33 0 144 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_042100190 chr15:75692407-75717681 Sample_02_0421 Brain BE2C_3 190 4 649 40 0 179 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_039601193 chr15:75692415-75706887 Sample_02_0396 Skin NHEK-D 1193 1 393 22 0 106 101 CSPG4,ODF3L1,DNM1P35,SNX33
SE_02_141700239 chr15:75692437-75711452 Sample_02_1417 Brain SF7761 239 8 506 31 0 125 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_097100079 chr15:75692443-75739588 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 79 9 1218 101 1 240 1831 CSPG4,DNM1P35,ODF3L1,SNX33,MIR4313
SE_02_085500185 chr15:75692454-75711262 Sample_02_0855 Glioblastoma Glioblastoma neurosphere cell_HF-2927 185 2 501 31 0 125 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_01_007400138 chr15:75692456-75719582 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 138 1 673 41 1 181 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_085400516 chr15:75692469-75710708 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 516 4 495 29 0 124 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_142000085 chr15:75692524-75711084 Sample_02_1420 Brain DIPG007 85 10 493 29 0 125 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_118600731 chr15:75692536-75713547 Sample_02_1186 Brain GBM15 731 7 545 33 0 143 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_006800010 chr15:75692537-75719071 Sample_02_0068 Skin A375_DMSO 10 6 659 40 1 181 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_005500488 chr15:75692543-75719285 Sample_02_0055 Lung IMR-90_Nutlin-3a 488 5 664 41 1 181 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_119300397 chr15:75692571-75706803 Sample_02_1193 Brain GBM27 397 1 379 22 0 106 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_118900100 chr15:75692596-75716114 Sample_02_1189 Brain GBM22 100 10 615 37 0 157 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_097900577 chr15:75692601-75710618 Sample_02_0979 Brain JN14-BS1_H3.3K27M 577 12 484 28 0 121 101 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_121000120 chr15:75692612-75715872 Sample_02_1210 Brain GBM17 120 15 605 37 0 157 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_118800372 chr15:75692617-75713755 Sample_02_1188 Brain GBM18 372 4 550 32 0 145 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_079400043 chr15:75692639-75713521 Sample_02_0794 Brain 1552 43 7 538 32 0 143 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_120000473 chr15:75692659-75713614 Sample_02_1200 Brain GBM36 473 7 541 32 0 143 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_072700672 chr15:75692677-75731916 Sample_02_0727 Fetal lung IMR90_Etoposide 672 8 976 64 1 223 1401 CSPG4,DNM1P35,ODF3L1,SNX33,MIR4313
SE_01_008900111 chr15:75692703-75739597 Sample_01_0089 Transverse colon transverse-colon 111 7 1206 100 1 240 1831 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_02_114800400 chr15:75692789-75717572 Sample_02_1148 Kidney WT 9-12_control_vehicle 400 5 630 39 0 179 267 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_01_008300136 chr15:75692821-75719528 Sample_01_0083 Sigmoid colon sigmoid-colon 136 1 658 40 1 181 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_01_007000098 chr15:75692837-75714542 Sample_01_0070 Ascending aorta ascending-aorta 98 1 565 34 0 148 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_006900604 chr15:75692838-75719383 Sample_02_0069 Brain SF268 604 3 655 40 1 181 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_01_009100437 chr15:75692856-75717648 Sample_01_0091 Uterus uterus 437 4 630 39 0 179 267 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_085600096 chr15:75692930-75713477 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 96 4 530 31 0 143 260 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_141600591 chr15:75692942-75705595 Sample_02_1416 Brain SF9402 591 1 326 20 0 97 90 CSPG4,ODF3L1,SNX33,DNM1P35
SE_01_008100469 chr15:75692949-75717608 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 469 2 627 38 0 179 256 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_118100310 chr15:75692982-75714042 Sample_02_1181 Brain GBM10 310 3 546 31 0 145 249 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_096000016 chr15:75692999-75738621 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 16 18 1156 91 1 240 1614 CSPG4,DNM1P35,ODF3L1,SNX33,MIR4313
SE_02_056900666 chr15:75693006-75738660 Sample_02_0569 Periodontal ligament mesenchymal stem cell 666 23 1159 92 1 240 1617 CSPG4,DNM1P35,ODF3L1,SNX33,MIR4313
SE_02_005600117 chr15:75693007-75739431 Sample_02_0056 Mammary gland HMEC 117 6 1195 99 1 240 1804 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_01_008800231 chr15:75693022-75718086 Sample_01_0088 Tibial nerve tibial-nerve 231 1 630 38 0 180 247 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_018000052 chr15:75693023-75722551 Sample_02_0180 melanoma CJM 52 4 727 43 1 189 247 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_098200389 chr15:75693030-75711161 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 389 6 481 29 0 125 79 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_042300042 chr15:75693033-75718030 Sample_02_0423 Skin A375 42 6 629 38 0 180 241 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_01_006100432 chr15:75693039-75722212 Sample_01_0061 Prostate RWPE1 432 4 722 42 1 189 237 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_107900387 chr15:75693046-75732123 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 387 11 973 63 1 228 1414 CSPG4,DNM1P35,ODF3L1,SNX33,MIR4313
SE_02_110500374 chr15:75693051-75707257 Sample_02_1105 Brain NBL-S 374 1 384 20 0 106 68 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_025100463 chr15:75693061-75716165 Sample_02_0251 Autonomic ganglia SH-SY5Y-MYCN-OFF 463 4 602 36 0 157 233 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_057000465 chr15:75693068-75710540 Sample_02_0570 Brain LN229_10_mM_glucose 465 9 468 27 0 118 67 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_088601499 chr15:75693074-75705246 Sample_02_0886 Skin foreskin_ p63KLF4 1499 1 318 20 0 93 66 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_018500158 chr15:75693082-75714018 Sample_02_0185 Skin UACC257 158 2 542 31 0 143 229 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_021100281 chr15:75693083-75717785 Sample_02_0211 Lung MRC-5_NFD_1DPT 281 6 626 38 0 177 229 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_01_009300143 chr15:75693104-75714201 Sample_01_0093 Aorta ascending aorta 143 1 546 31 0 142 226 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_036600212 chr15:75693108-75718012 Sample_02_0366 Skeletal muscle NCI0082 212 4 628 38 0 177 225 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_113800723 chr15:75693118-75719063 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 723 9 641 38 1 177 221 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_079500426 chr15:75693148-75704603 Sample_02_0795 Brain 1953 426 5 299 20 0 91 49 CSPG4,ODF3L1,SNX33,DNM1P35
SE_01_010900204 chr15:75693148-75738895 Sample_01_0109 Colon transverse colon_54y 204 10 1163 94 1 236 1660 CSPG4,DNM1P35,ODF3L1,SNX33,MIR4313
SE_02_084000718 chr15:75693149-75717240 Sample_02_0840 Embryo hNPCs_R1159Q/+ 718 15 614 38 0 173 215 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_085800089 chr15:75693153-75718594 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 89 4 634 38 1 176 214 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_017100792 chr15:75693153-75739322 Sample_02_0171 Lung IMR-90_proliferating 792 11 1188 97 1 236 1750 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_02_080200153 chr15:75693159-75713753 Sample_02_0802 Brain 3094 153 8 535 31 0 141 214 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_00_002500068 chr15:75693159-75733249 Sample_00_0025 Muscle of leg muscle-of-leg 68 5 1005 70 1 232 1448 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_02_018400133 chr15:75693164-75713931 Sample_02_0184 Skin SKMEL30 133 2 539 31 0 141 213 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_017201157 chr15:75693171-75739596 Sample_02_0172 Lung IMR-90_quiescent 1157 12 1195 99 1 236 1777 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_02_097800414 chr15:75693179-75710737 Sample_02_0978 Brain 2168_IDH1 414 10 472 27 0 120 45 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_106900279 chr15:75693189-75716947 Sample_02_1069 Bone marrow Bone marrow aspirate 279 5 609 38 0 163 209 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_121100422 chr15:75693203-75713581 Sample_02_1211 Brain GBM21 422 11 527 31 0 139 207 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_095500143 chr15:75693248-75711238 Sample_02_0955 Brain IDH1_2469 143 10 476 29 0 120 33 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_086700691 chr15:75693257-75716899 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 691 12 605 37 0 162 198 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_01_007500352 chr15:75693258-75719341 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 352 4 643 39 1 176 198 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_021001048 chr15:75693259-75717947 Sample_02_0210 Lung MRC-5_N_1DPT 1048 5 624 38 0 174 198 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_018100075 chr15:75693261-75717231 Sample_02_0181 melanoma COLO679 75 4 612 38 0 172 197 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_074000842 chr15:75693265-75732939 Sample_02_0740 Muscle RH3 842 10 999 70 1 229 1430 CSPG4,DNM1P35,ODF3L1,SNX33,MIR4313
SE_02_126800911 chr15:75693282-75704804 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 911 7 300 20 0 90 26 CSPG4,ODF3L1,SNX33,DNM1P35
SE_00_004300124 chr15:75693294-75739611 Sample_00_0043 Stomach stomach_96d 124 6 1195 99 1 235 1751 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_01_011501188 chr15:75693323-75717796 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1188 6 622 38 0 174 183 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_086800630 chr15:75693339-75717754 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 630 11 620 37 0 174 181 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_00_002600015 chr15:75693343-75733247 Sample_00_0026 Muscle of trunk muscle-of-trunk 15 6 1002 69 1 231 1412 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_02_133500331 chr15:75693344-75706303 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 331 7 341 19 0 98 12 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_141500838 chr15:75693346-75707825 Sample_02_1415 Brain DIPGIV 838 5 396 22 0 101 12 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_113901063 chr15:75693348-75721669 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 1063 8 700 38 1 182 178 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_046500568 chr15:75693354-75718948 Sample_02_0465 Adipose subcutaneous adipocytes 568 18 635 37 1 176 178 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_096100013 chr15:75693368-75731904 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 13 15 961 62 1 218 1309 CSPG4,DNM1P35,ODF3L1,SNX33,MIR4313
SE_02_044100335 chr15:75693371-75717600 Sample_02_0441 Bone M112 335 10 618 37 0 174 175 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_043900172 chr15:75693383-75717835 Sample_02_0439 Bone Hu09 172 10 619 37 0 174 172 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_034100476 chr15:75693393-75718053 Sample_02_0341 Autonomic ganglia SH-SY5Y_untreat 476 4 621 37 0 175 169 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_094400084 chr15:75693397-75713610 Sample_02_0944 Brain TS576 84 7 523 30 0 138 168 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_096700392 chr15:75693434-75715646 Sample_02_0967 Brain H3.3K27M_JN57 392 14 578 35 0 152 166 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_119800856 chr15:75693445-75710560 Sample_02_1198 Brain GBM34 856 13 459 26 0 115 0 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_079600232 chr15:75693450-75713594 Sample_02_0796 Brain 2229 232 6 522 30 0 138 166 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_091301399 chr15:75693468-75717168 Sample_02_0913 Heart left ventricle_DCM_LV1304 1399 10 608 37 0 172 166 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_057100596 chr15:75693475-75710431 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 596 10 458 26 0 115 0 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_020900893 chr15:75693478-75732398 Sample_02_0209 Lung MRC-5_MRC5_1DPT 893 9 973 63 1 226 1400 ODF3L1,CSPG4,MIR4313,DNM1P35,SNX33
SE_02_033900274 chr15:75693482-75711665 Sample_02_0339 Neuroblastoma NGP 274 5 480 28 0 130 0 CSPG4,ODF3L1,DNM1P35,SNX33
SE_02_037200396 chr15:75693499-75717554 Sample_02_0372 Skeletal muscle RMS008 396 6 615 37 0 174 166 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_153900585 chr15:75693523-75721862 Sample_02_1539 Nasopharyngeal C666-1 585 11 702 39 1 184 166 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_041700085 chr15:75693549-75704558 Sample_02_0417 Embryo H9_Null 85 2 289 19 0 90 0 CSPG4,ODF3L1,DNM1P35,SNX33
SE_02_092300941 chr15:75693604-75716970 Sample_02_0923 Heart fetal heart_PCW10_12522 941 11 597 37 0 162 166 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_096400021 chr15:75693616-75732951 Sample_02_0964 Brain H3.3K27M_HSJ019-Tumor-Rx_brain 21 15 989 69 1 229 1400 CSPG4,DNM1P35,ODF3L1,SNX33,MIR4313
SE_02_061300552 chr15:75693617-75717527 Sample_02_0613 Liposarcoma MLPS_T1 552 18 609 37 0 174 166 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_152100343 chr15:75693638-75718203 Sample_02_1521 Skin A375 DMSO 343 6 615 37 0 175 166 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_037500169 chr15:75693658-75722276 Sample_02_0375 Skeletal muscle RMS216 169 6 707 42 1 184 166 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_120100390 chr15:75693660-75722035 Sample_02_1201 Brain GBM37 390 6 697 40 1 184 166 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_097400449 chr15:75693710-75710861 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 449 10 458 26 0 119 0 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_058600488 chr15:75693732-75739497 Sample_02_0586 Chordal patient-derived chordoma MGH_4 488 14 1179 98 1 235 1730 CSPG4,DNM1P35,ODF3L1,SNX33,MIR4313
SE_00_003800196 chr15:75693777-75739241 Sample_00_0038 Spinal cord spinal-cord_108d 196 7 1168 95 1 235 1683 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_02_112900830 chr15:75693808-75717064 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 830 14 593 37 0 171 166 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_158600421 chr15:75693852-75704351 Sample_02_1586 Blood SupB15 ACY1035 421 7 274 19 0 87 0 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_106400766 chr15:75693856-75716095 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 766 7 579 35 0 152 166 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_040500041 chr15:75693902-75717020 Sample_02_0405 Mammary gland ZR-75-30_KO 41 4 590 37 0 168 166 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_091801255 chr15:75693938-75717234 Sample_02_0918 Heart left ventricle_DCM_LV1437 1255 12 593 37 0 168 166 CSPG4,ODF3L1,SNX33,DNM1P35,MIR4313
SE_02_022000239 chr15:75693956-75712130 Sample_02_0220 Brain BE2C_1 239 4 475 27 0 128 0 CSPG4,ODF3L1,DNM1P35,SNX33
SE_02_098000390 chr15:75693963-75710661 Sample_02_0980 Brain BT245 390 6 447 25 0 115 0 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_094200165 chr15:75693973-75704417 Sample_02_0942 Brain LN229 165 7 273 18 0 83 0 CSPG4,ODF3L1,SNX33,DNM1P35
SE_00_001100750 chr15:75693980-75724687 Sample_00_0011 Esophagus esophagus 750 6 757 45 1 199 332 ODF3L1,CSPG4,MIR4313,DNM1P35,SNX33
SE_02_003200819 chr15:75694016-75739807 Sample_02_0032 Pancreas pancreatic-islets-M 819 14 1184 99 1 230 1745 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_00_000300903 chr15:75694041-75733298 Sample_00_0003 Adrenal gland adrenal-gland_97d 903 7 982 68 1 226 1400 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_02_040600044 chr15:75694102-75712857 Sample_02_0406 Mammary gland ZR-75-30_parental 44 5 490 28 0 129 108 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_087300443 chr15:75694122-75711209 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 443 4 451 27 0 115 0 CSPG4,ODF3L1,SNX33,DNM1P35
SE_02_035300834 chr15:75694301-75738805 Sample_02_0353 Colon HT29 834 7 1129 91 1 230 1585 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_00_002900343 chr15:75694448-75732917 Sample_00_0029 Ovary ovary 343 19 964 67 1 224 1400 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_01_011000815 chr15:75694582-75703926 Sample_01_0110 Aorta thoracic aorta_37y 815 1 248 17 0 72 0 CSPG4,ODF3L1,SNX33,DNM1P35
SE_00_000400024 chr15:75694710-75717493 Sample_00_0004 Aorta aorta 24 30 578 36 0 166 166 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_02_034500142 chr15:75695161-75739698 Sample_02_0345 Blood AML8 142 5 1146 97 1 219 1730 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_02_053300997 chr15:75695316-75709602 Sample_02_0533 Blood vessel Circle of Willis_54y 997 1 387 25 0 86 0 CSPG4,ODF3L1,SNX33,DNM1P35
SE_00_004101180 chr15:75695623-75724774 Sample_00_0041 Stomach stomach_3y 1180 6 715 45 1 181 332 ODF3L1,CSPG4,MIR4313,DNM1P35,SNX33
SE_02_087200219 chr15:75695753-75732546 Sample_02_0872 Colon HCT116_siCtrl-5FU 219 12 918 63 1 204 1400 CSPG4,DNM1P35,ODF3L1,SNX33,MIR4313
SE_02_010100660 chr15:75696189-75739792 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 660 8 1124 97 1 212 1743 DNM1P35,ODF3L1,CSPG4,MIR4313,SNX33
SE_02_021500065 chr15:75696704-75717030 Sample_02_0215 Skin NHEK_siGRHL3 65 9 515 35 0 144 166 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_01_006000236 chr15:75697508-75705021 Sample_01_0060 Embryo radial-glial-cell 236 2 187 14 0 62 0 CSPG4,ODF3L1,DNM1P35,SNX33
SE_02_055300296 chr15:75697573-75738700 Sample_02_0553 Other HSSY2 shCt 296 17 1031 86 1 206 1553 CSPG4,DNM1P35,ODF3L1,SNX33,MIR4313
SE_02_044401115 chr15:75697615-75706848 Sample_02_0444 Bone osteosarcoma tumor P10 1115 1 241 13 0 72 0 CSPG4,ODF3L1,SNX33,DNM1P35
SE_01_004700240 chr15:75697642-75713580 Sample_01_0047 Embryo mid-neurogenesis-radial-glial-cells 240 3 402 24 0 104 166 CSPG4,MIR4313,ODF3L1,DNM1P35,SNX33
SE_00_003400632 chr15:75698838-75724765 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 632 4 626 39 1 162 332 ODF3L1,CSPG4,MIR4313,DNM1P35,SNX33
SE_02_114100235 chr15:75700557-75709864 Sample_02_1141 Peripheral nerve MPNST3813E_PRC2 mutant 235 5 257 15 0 53 0 CSPG4,ODF3L1,DNM1P35
SE_02_127800715 chr15:75707266-75719692 Sample_02_1278 Chordoma UCH1_DMSO_48h 715 1 272 19 1 75 166 CSPG4,ODF3L1,DNM1P35,MIR4313
SE_02_121200177 chr15:75707370-75714131 Sample_02_1212 Brain GBM30 177 1 162 11 0 39 166 CSPG4,ODF3L1,DNM1P35,MIR4313
Genomic distribution of SEs associated with CSPG4
Genome Browser

The strength of the tissue affected by the gene

Expression of CSPG4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)