SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000185883
Gene: ATP6V0C Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:2513952-2520218 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_010300277 chr16:2475186-2518499 Sample_01_0103 Pancreas pancreas_37y 277 15 1333 68 0 153 2009 ATP6V0C,TBC1D24,CEMP1,CCNF,MIR3178,C16ORF59,NTN3,PDPK1,MIR6768,MIR6767,AMDHD2
SE_04_000100952 chr16:2477421-2519016 Sample_04_0001 Blood heat shocked K562 952 9 1289 66 0 140 1953 ATP6V0C,TBC1D24,CEMP1,CCNF,MIR3178,C16ORF59,NTN3,PDPK1,MIR6768,MIR6767,AMDHD2
SE_04_000200965 chr16:2477667-2518514 Sample_04_0002 Blood cold shocked K562 965 9 1267 66 0 140 1953 ATP6V0C,TBC1D24,CEMP1,CCNF,MIR3178,C16ORF59,NTN3,PDPK1,MIR6768,MIR6767,AMDHD2
SE_01_007200493 chr16:2481407-2521523 Sample_01_0072 Breast epithelium breast-epithelium 493 5 1254 62 0 184 2520 TBC1D24,AMDHD2,ATP6V0C,PDPK1,C16ORF59,MIR3178,CEMP1,NTN3
SE_02_035900351 chr16:2482077-2521893 Sample_02_0359 Colon Colo741 351 4 1252 62 0 182 2520 TBC1D24,AMDHD2,ATP6V0C,PDPK1,C16ORF59,MIR3178,CEMP1,NTN3
SE_02_119600765 chr16:2482198-2519029 Sample_02_1196 Brain GBM32 765 11 1146 58 0 133 1953 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768,MIR6767
SE_02_061300559 chr16:2482256-2518350 Sample_02_0613 Liposarcoma MLPS_T1 559 10 1122 57 0 133 1953 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768,MIR6767
SE_02_143300253 chr16:2482355-2527474 Sample_02_1433 Bone A673 STAG2 null 253 18 1446 75 0 184 2548 ATP6V0C,AMDHD2,TBC1D24,CEMP1,C16ORF59,MIR3178,NTN3,PDPK1,MIR6768,MIR6767
SE_02_096600351 chr16:2482466-2516639 Sample_02_0966 Brain H3.3K27M_JN29-BS3 351 10 1061 56 0 130 1953 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768,MIR6767
SE_02_143200557 chr16:2482597-2518523 Sample_02_1432 Bone A673 STAG2 WT 557 13 1121 58 0 132 1953 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768,MIR6767
SE_02_133000506 chr16:2482834-2518745 Sample_02_1330 Blood AMU-AML1 506 9 1121 58 0 130 1953 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768,MIR6767
SE_00_004601037 chr16:2485829-2517584 Sample_00_0046 Heart right ventricle_34y 1037 10 985 51 0 130 1953 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768,MIR6767
SE_02_034200391 chr16:2486011-2519062 Sample_02_0342 Liver HSPCs_F0 391 5 1029 50 0 130 1957 TBC1D24,ATP6V0C,PDPK1,C16ORF59,MIR3178,CEMP1,NTN3,AMDHD2
SE_02_061700274 chr16:2486235-2519075 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 274 3 1019 50 0 130 1961 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768,MIR6767
SE_02_104800720 chr16:2486477-2517463 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 720 6 956 49 0 130 1953 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768,MIR6767
SE_02_072900628 chr16:2487419-2510871 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 628 11 763 43 0 75 1715 TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,ATP6V0C,MIR6768,MIR6767
SE_01_007500907 chr16:2497021-2521761 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 907 4 782 38 0 141 2315 TBC1D24,AMDHD2,ATP6V0C,PDPK1,C16ORF59,MIR3178,CEMP1,NTN3
SE_02_046500652 chr16:2497117-2519229 Sample_02_0465 Adipose subcutaneous adipocytes 652 13 686 34 0 92 1774 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_01_006900673 chr16:2497133-2521633 Sample_01_0069 Adrenal gland adrenal-gland 673 4 767 37 0 139 2290 TBC1D24,AMDHD2,ATP6V0C,PDPK1,C16ORF59,MIR3178,CEMP1,NTN3
SE_02_122200189 chr16:2497311-2515939 Sample_02_1222 Bone marrow KMS12 189 2 576 31 0 87 1687 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_01_010700716 chr16:2497536-2521600 Sample_01_0107 Esophagus esophagus squamous epithelium 716 7 746 37 0 139 2251 ATP6V0C,AMDHD2,TBC1D24,CEMP1,C16ORF59,MIR3178,NTN3,PDPK1,MIR6768
SE_02_103602805 chr16:2499222-2501301 Sample_02_1036 Mammary gland HCC70_XY018 2805 1 66 7 0 23 497 TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,ATP6V0C,MIR6768
SE_02_101701506 chr16:2500914-2526341 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1506 5 816 40 0 119 1652 ATP6V0C,AMDHD2,TBC1D24,CEMP1,C16ORF59,MIR3178,NTN3,PDPK1,MIR6768
SE_02_117300886 chr16:2501024-2520240 Sample_02_1173 Brain GBM01 886 4 574 27 0 94 1321 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_02_074600738 chr16:2501055-2518168 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 738 5 518 25 0 65 1043 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_02_155500409 chr16:2501070-2517035 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 409 7 479 25 0 65 1042 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_02_122700305 chr16:2501137-2518505 Sample_02_1227 Bone marrow U266 305 5 528 26 0 64 1024 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_02_119000410 chr16:2501282-2518900 Sample_02_1190 Brain GBM24 410 7 535 25 0 63 986 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_02_119100528 chr16:2501295-2521411 Sample_02_1191 Brain GBM25 528 7 618 28 0 110 1548 ATP6V0C,AMDHD2,TBC1D24,CEMP1,C16ORF59,MIR3178,NTN3,PDPK1,MIR6768
SE_02_074700940 chr16:2501408-2516012 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 940 5 439 22 0 60 951 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_02_119700866 chr16:2501436-2518445 Sample_02_1197 Brain GBM33 866 7 514 25 0 63 947 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_02_131600492 chr16:2501655-2519272 Sample_02_1316 Brain hMGLs_TREM2-R47H 492 4 530 25 0 65 928 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_02_157300885 chr16:2501805-2520138 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 885 7 546 24 0 91 1080 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_02_155600409 chr16:2501904-2518214 Sample_02_1556 Gastrointestinal Stromal GIST-5_KIT e9 409 7 493 22 0 62 814 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_02_131700461 chr16:2502768-2517379 Sample_02_1317 Brain hMGLs_SORL1-KO 461 4 427 20 0 60 595 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_02_146800571 chr16:2505010-2527718 Sample_02_1468 Blood HUDEP-2_WT 571 4 726 35 0 117 989 ATP6V0C,AMDHD2,TBC1D24,CEMP1,C16ORF59,MIR3178,NTN3,PDPK1,MIR6768
SE_02_135000601 chr16:2505416-2518162 Sample_02_1350 Leukophereses leukophereses_p456 601 5 374 16 0 57 285 ATP6V0C,TBC1D24,CEMP1,C16ORF59,MIR3178,AMDHD2,NTN3,PDPK1,MIR6768
SE_02_034700216 chr16:2506364-2520311 Sample_02_0347 Blood AML11 216 2 413 17 0 86 529 ATP6V0C,PDPK1,C16ORF59,MIR3178,CEMP1,TBC1D24,NTN3,AMDHD2
SE_02_010000394 chr16:2506368-2520241 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 394 2 410 17 0 86 502 ATP6V0C,PDPK1,C16ORF59,MIR3178,CEMP1,TBC1D24,NTN3,AMDHD2
SE_02_034500357 chr16:2506429-2519348 Sample_02_0345 Blood AML8 357 2 384 16 0 63 306 ATP6V0C,PDPK1,C16ORF59,MIR3178,CEMP1,TBC1D24,NTN3,AMDHD2
SE_02_131200564 chr16:2506447-2517449 Sample_02_1312 Brain hMGLs_WT 564 3 327 15 0 57 238 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_131400608 chr16:2506496-2516857 Sample_02_1314 Brain hMGLs_TREM2-KO 608 3 312 15 0 56 238 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_134800519 chr16:2506535-2518823 Sample_02_1348 Leukophereses leukophereses_p408 519 2 373 15 0 57 238 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_103400678 chr16:2506547-2527374 Sample_02_1034 Blood AML cell 678 5 678 32 0 108 805 ATP6V0C,AMDHD2,CEMP1,C16ORF59,MIR3178,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_146000722 chr16:2506628-2518801 Sample_02_1460 Blood Mutz-3 722 4 368 14 0 57 238 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_131300615 chr16:2506656-2518268 Sample_02_1313 Brain hMGLs_CD33_SNP 615 4 345 12 0 57 238 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_034400206 chr16:2506800-2519953 Sample_02_0344 Blood CD34 206 2 390 14 0 76 447 ATP6V0C,PDPK1,C16ORF59,MIR3178,CEMP1,TBC1D24,NTN3,AMDHD2
SE_02_117401088 chr16:2506925-2518666 Sample_02_1174 Brain GBM02 1088 5 349 12 0 57 238 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_117500357 chr16:2507109-2520227 Sample_02_1175 Brain GBM03 357 4 384 13 0 86 502 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_048700165 chr16:2507117-2517075 Sample_02_0487 Bone marrow HSCe_71y_CD34+,CD38-,Lineage- 165 5 291 11 0 57 238 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_109400043 chr16:2507142-2517415 Sample_02_1094 Embryo H9_0Dox 43 3 302 11 0 57 238 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_143100870 chr16:2507176-2518427 Sample_02_1431 Blood T cell 870 2 335 11 0 57 238 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_048400202 chr16:2507405-2517016 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 202 3 285 11 0 57 238 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_00_005100853 chr16:2507415-2519233 Sample_00_0051 Adrenal gland adrenal gland 30y 853 7 354 12 0 59 285 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_048300172 chr16:2507659-2517178 Sample_02_0483 Bone marrow HSCe_22y_CD34+,CD38-,Lineage- 172 4 275 10 0 57 238 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_048900256 chr16:2509665-2517026 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 256 4 195 4 0 55 238 ATP6V0C,CEMP1,C16ORF59,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_028400602 chr16:2511030-2521872 Sample_02_0284 Pelvis patient 119 602 1 320 8 0 104 805 AMDHD2,ATP6V0C,PDPK1,MIR3178,CEMP1,TBC1D24,NTN3
SE_02_039600575 chr16:2511153-2521604 Sample_02_0396 Skin NHEK-D 575 1 304 7 0 104 805 AMDHD2,ATP6V0C,PDPK1,MIR3178,CEMP1,TBC1D24,NTN3
SE_02_142600987 chr16:2511166-2518195 Sample_02_1426 Shoulder fibroblast_341 987 2 192 3 0 55 238 ATP6V0C,CEMP1,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_081601187 chr16:2511862-2517539 Sample_02_0816 Ovary Clear cell ovarian cancer 1187 1 142 3 0 55 238 ATP6V0C,CEMP1,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_01_010101308 chr16:2512181-2517713 Sample_01_0101 Pancreas pancreas_54y 1308 1 145 3 0 55 238 ATP6V0C,CEMP1,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_122401088 chr16:2512237-2516035 Sample_02_1224 Bone marrow normal plasma cell 1088 1 96 1 0 52 238 ATP6V0C,CEMP1,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_129900717 chr16:2512405-2521530 Sample_02_1299 Liver liver 717 1 271 7 0 104 805 ATP6V0C,AMDHD2,CEMP1,MIR3178,TBC1D24,NTN3,PDPK1,MIR6768
SE_01_010400985 chr16:2512978-2517898 Sample_01_0104 Lung upper lobe of left lung 985 1 137 3 0 55 238 ATP6V0C,CEMP1,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_00_004000995 chr16:2513043-2517808 Sample_00_0040 Spleen spleen_30y 995 1 132 3 0 55 238 ATP6V0C,PDPK1,MIR3178,CEMP1,TBC1D24,NTN3,AMDHD2
SE_02_136500731 chr16:2513294-2518483 Sample_02_1365 Pancreas AsPC1-untreated 731 3 152 4 0 55 238 ATP6V0C,CEMP1,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
SE_02_104900978 chr16:2513688-2520213 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 978 1 191 5 0 82 464 ATP6V0C,CEMP1,MIR3178,AMDHD2,TBC1D24,NTN3,PDPK1,MIR6768
Genomic distribution of SEs associated with ATP6V0C
Genome Browser

The strength of the tissue affected by the gene

Expression of ATP6V0C

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)