Sample overview
| Species: | Human |
| Biosample type: | Cell line |
| Tissue type: | tumor |
| Data source: | NCBI GEO/SRA |
| Biosample name: | VAESBJ_DOX |
| Sample ID: | Sample_02_2981 |
| SE ID | SE Region | Size | Rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_298100001 | chr17:43231472-43301731 |
70259 | 1 | 20 | 0 | 7 | 0 | 223 | 0 | RNU2-1,TMEM106A,LINC00854 |
| SE_02_298100002 | chr5:47801987-49592067 |
1790080 | 2 | 677 | 0 | 0 | 0 | 19 | 0 | EMB |
| SE_02_298100003 | chr5:10017-11777 |
1760 | 3 | 1 | 47 | 0 | 0 | 0 | 0 | PLEKHG4B |
| SE_02_298100004 | chr10:40704575-41497750 |
793175 | 4 | 275 | 0 | 3 | 0 | 0 | 0 | LOC441666 |
| SE_02_298100005 | chr1:122503487-123472536 |
969049 | 5 | 380 | 0 | 0 | 0 | 0 | 0 | EMBP1 |
| SE_02_298100006 | chr1:123907955-124784332 |
876377 | 6 | 325 | 0 | 0 | 0 | 0 | 0 | |
| SE_02_298100007 | chr19:24908925-25728793 |
819868 | 7 | 323 | 0 | 0 | 0 | 0 | 0 | HAVCR1P1,ZNF254 |
| SE_02_298100008 | chrUn_GL000220v1:126699-136817 |
10118 | 8 | 4 | 0 | 0 | 0 | 0 | 0 | |
| SE_02_298100009 | chr21:8221033-8237736 |
16703 | 9 | 5 | 0 | 0 | 0 | 0 | 0 | RNA28S5,LOC100507412,MIR6724-1,MIR3687-1,MIR3648-1,RNA5-8S5,RNA18S5 |
| SE_02_298100010 | chr17:59822973-59858107 |
35134 | 10 | 17 | 818 | 539 | 2 | 30 | 248 | MIR21,VMP1,RPS6KB1,TUBD1 |
| SE_02_298100011 | chr22_KI270733v1_random:145035-154789 |
9754 | 11 | 4 | 0 | 0 | 0 | 0 | 0 | |
| SE_02_298100012 | chr19:26137601-26775846 |
638245 | 12 | 235 | 0 | 0 | 0 | 0 | 0 | |
| SE_02_298100013 | chr13:22808839-22853393 |
44554 | 13 | 18 | 1377 | 198 | 3 | 189 | 115 | BASP1P1 |
| SE_02_298100014 | chr19:18362191-18388710 |
26519 | 14 | 14 | 770 | 335 | 3 | 55 | 1530 | PGPEP1,MIR3189,GDF15,ISYNA1,LRRC25,LSM4,SSBP4 |
| SE_02_298100015 | chr21:8448234-8465349 |
17115 | 15 | 5 | 0 | 0 | 0 | 0 | 0 | RNA45S5 |
| SE_02_298100016 | chr22:30180835-30258101 |
77266 | 16 | 17 | 2055 | 1353 | 16 | 217 | 1175 | LIF,OSM,GATSL3 |
| SE_02_298100017 | chr10:72296299-72332692 |
36393 | 17 | 21 | 1020 | 1036 | 0 | 72 | 16 | DNAJB12,DDIT4 |
| SE_02_298100018 | chr21:8403973-8420758 |
16785 | 18 | 5 | 0 | 0 | 0 | 0 | 0 | LOC100507412,RNA45S5 |
| SE_02_298100019 | chr5:47309436-47786323 |
476887 | 19 | 205 | 0 | 0 | 0 | 0 | 0 | |
| SE_02_298100020 | chr17:59780195-59810459 |
30264 | 20 | 13 | 643 | 465 | 2 | 52 | 34 | VMP1,MIR21 |
| SE_02_298100021 | chr8:143935759-143954381 |
18622 | 21 | 5 | 627 | 633 | 1 | 0 | 1631 | PLEC,MIR661,PARP10,GRINA |
| SE_02_298100022 | chr19:1245107-1267111 |
22004 | 22 | 7 | 844 | 122 | 1 | 254 | 1576 | MIDN,C19ORF24,CIRBP,CIRBP-AS1,ATP5D,STK11,CBARP,EFNA2 |
| SE_02_298100023 | chr6:161408727-161443397 |
34670 | 23 | 13 | 1116 | 53 | 3 | 65 | 0 | PARK2,AGPAT4 |
| SE_02_298100024 | chr17:75076662-75092837 |
16175 | 24 | 5 | 430 | 530 | 0 | 12 | 349 | SLC16A5,NT5C,ATP5H,KCTD2,ARMC7 |
| SE_02_298100025 | chr6:24305663-24363577 |
57914 | 25 | 15 | 1625 | 358 | 12 | 96 | 270 | KAAG1,DCDC2,MRS2 |
| SE_02_298100026 | chr19:26788595-27190465 |
401870 | 26 | 168 | 0 | 0 | 0 | 0 | 0 | LOC101927151 |
| SE_02_298100027 | chr7:5419644-5429604 |
9960 | 27 | 4 | 298 | 11 | 0 | 43 | 795 | TNRC18 |
| SE_02_298100028 | chr5:49609744-49646696 |
36952 | 28 | 13 | 0 | 12 | 0 | 45 | 0 | EMB |
| SE_02_298100029 | chr2:85402521-85438345 |
35824 | 29 | 8 | 973 | 1311 | 1 | 73 | 2076 | CAPG,SH2D6,RETSAT,ELMOD3 |
| SE_02_298100030 | chr10:46521997-46541695 |
19698 | 30 | 6 | 231 | 90 | 0 | 29 | 242 | SYT15,GPRIN2 |
| SE_02_298100031 | chr13:99969512-99991280 |
21768 | 31 | 5 | 517 | 26 | 3 | 25 | 1271 | ZIC2,ZIC5,LOC101927437,LINC00554 |
| SE_02_298100032 | chr17:64705092-64735033 |
29941 | 32 | 10 | 757 | 235 | 0 | 36 | 0 | SMURF2,LOC146880,MIR6080 |
| SE_02_298100033 | chr1:123487372-123895263 |
407891 | 33 | 158 | 0 | 0 | 0 | 0 | 0 | |
| SE_02_298100034 | chr19:13839505-13866073 |
26568 | 34 | 10 | 702 | 169 | 1 | 13 | 0 | NANOS3,C19ORF57,LOC284454,MIR23A,ZSWIM4,MIR27A,MIR24-2,MIR181D,MIR181C,CC2D1A |
| SE_02_298100035 | chr19:13153143-13174163 |
21020 | 35 | 9 | 558 | 136 | 2 | 144 | 415 | IER2,STX10,LYL1,TRMT1,NACC1 |
| SE_02_298100036 | chr8:32265088-32336989 |
71901 | 36 | 12 | 1880 | 164 | 7 | 233 | 0 | NRG1,NRG1-IT3 |
| SE_02_298100037 | chr19:25745169-26124742 |
379573 | 37 | 139 | 0 | 0 | 0 | 0 | 0 | |
| SE_02_298100038 | chr18:3621812-3672557 |
50745 | 38 | 12 | 1452 | 156 | 5 | 63 | 25 | DLGAP1,DLGAP1-AS2,DLGAP1-AS1 |
| SE_02_298100039 | chr17:82215403-82232102 |
16699 | 39 | 4 | 539 | 706 | 1 | 0 | 317 | SLC16A3,CSNK1D,MIR6787,CCDC57 |
| SE_02_298100040 | chr6:37123716-37144419 |
20703 | 40 | 8 | 555 | 46 | 1 | 170 | 0 | PIM1 |
| SE_02_298100041 | chr19:2032222-2062297 |
30075 | 41 | 8 | 1062 | 114 | 2 | 115 | 1966 | MKNK2,IZUMO4,MOB3A,BTBD2 |
| SE_02_298100042 | chr2:27917012-27953642 |
36630 | 42 | 10 | 821 | 381 | 0 | 94 | 28 | BRE,RBKS,BRE-AS1,MIR4263 |
| SE_02_298100043 | chr7:47756315-47788948 |
32633 | 43 | 12 | 1000 | 359 | 3 | 29 | 293 | PKD1L1,LINC00525,C7ORF69 |
| SE_02_298100044 | chr17:81386607-81397833 |
11226 | 44 | 3 | 355 | 113 | 0 | 0 | 0 | BAHCC1,LOC100130370,MIR4740 |
| SE_02_298100045 | chr19:1168227-1184057 |
15830 | 45 | 6 | 580 | 106 | 0 | 47 | 146 | SBNO2,STK11 |
| SE_02_298100046 | chr21:45318027-45336394 |
18367 | 46 | 9 | 741 | 140 | 2 | 0 | 0 | POFUT2,LINC00316,LOC642852 |
| SE_02_298100047 | chr16:69056841-69077928 |
21087 | 47 | 12 | 477 | 288 | 2 | 29 | 0 | TANGO6,HAS3 |
| SE_02_298100048 | chr10:73889417-73908998 |
19581 | 48 | 9 | 524 | 683 | 3 | 7 | 0 | C10ORF55,PLAU,CAMK2G |
| SE_02_298100049 | chr5:150465031-150484883 |
19852 | 49 | 8 | 579 | 146 | 0 | 88 | 0 | LOC102546298,RPS14,NDST1 |
| SE_02_298100050 | chr19:48543461-48569326 |
25865 | 50 | 5 | 937 | 349 | 1 | 32 | 146 | SULT2B1,LMTK3,SPACA4,SPHK2,FAM83E |
| SE_02_298100051 | chr19:12782394-12794262 |
11868 | 51 | 4 | 268 | 94 | 0 | 66 | 489 | JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1 |
| SE_02_298100052 | chr7:101114928-101125451 |
10523 | 52 | 8 | 289 | 235 | 1 | 0 | 0 | SERPINE1,AP1S1,TRIM56,VGF,MIR4653 |
| SE_02_298100053 | chr17:78329624-78354791 |
25167 | 53 | 4 | 742 | 37 | 1 | 73 | 0 | LOC101928674,PGS1,SOCS3 |
| SE_02_298100054 | chr9:129476366-129500705 |
24339 | 54 | 6 | 676 | 65 | 0 | 40 | 390 | LINC00963 |
| SE_02_298100055 | chr16:29594542-29615858 |
21316 | 55 | 6 | 487 | 227 | 0 | 65 | 461 | MIR3680-1,SLC7A5P1,SPN |
| SE_02_298100056 | chr10:4659215-4705897 |
46682 | 56 | 10 | 1370 | 141 | 4 | 84 | 250 | LINC00705,LINC00704 |
| SE_02_298100057 | chr17:64669151-64692025 |
22874 | 57 | 7 | 555 | 178 | 1 | 62 | 0 | SMURF2 |
| SE_02_298100058 | chr2:234240454-234260324 |
19870 | 58 | 7 | 542 | 20 | 0 | 55 | 0 | SPP2,ARL4C |
| SE_02_298100059 | chr6:26328392-26353612 |
25220 | 59 | 7 | 656 | 1455 | 9 | 0 | 91 | BTN3A2,BTN2A2,HIST1H4H,BTN3A1 |
| SE_02_298100060 | chr7:2515784-2534550 |
18766 | 60 | 6 | 627 | 99 | 1 | 29 | 1399 | LFNG,MIR4648,IQCE,BRAT1,GRIFIN |
| SE_02_298100061 | chr17:81512022-81515498 |
3476 | 61 | 1 | 157 | 109 | 0 | 0 | 271 | ACTG1,FSCN2,FAAP100 |
| SE_02_298100062 | chr14:102261857-102283135 |
21278 | 62 | 7 | 546 | 258 | 0 | 49 | 45 | MOK,ZNF839 |
| SE_02_298100063 | chr17:77108649-77126297 |
17648 | 63 | 7 | 479 | 45 | 3 | 39 | 0 | SEC14L1,SCARNA16,MIR6516 |
| SE_02_298100064 | chr7:27150739-27162367 |
11628 | 64 | 4 | 305 | 232 | 1 | 187 | 927 | HOXA-AS3,HOXA7,HOXA10,HOXA11,HOXA10-AS,MIR196B,HOTTIP,HOXA-AS2,HOXA3,HOXA2,HOXA5,HOXA4,HOXA9,HOXA13,HOXA6,HOXA10-HOXA9,HOXA11-AS |
| SE_02_298100065 | chr14:49959685-50003701 |
44016 | 65 | 8 | 1194 | 197 | 2 | 111 | 615 | LINC01588,MIR6076 |
| SE_02_298100066 | chrX:156030358-156030733 |
375 | 66 | 1 | 0 | 0 | 0 | 0 | 0 | IL9R,DDX11L16 |
| SE_02_298100067 | chr19:2525153-2547031 |
21878 | 67 | 9 | 749 | 91 | 1 | 0 | 0 | GNG7,GADD45B |
| SE_02_298100068 | chr17:59748915-59764608 |
15693 | 68 | 7 | 339 | 365 | 2 | 24 | 0 | VMP1,PTRH2 |
| SE_02_298100069 | chr10:40364320-40525683 |
161363 | 69 | 49 | 0 | 0 | 0 | 0 | 0 | |
| SE_02_298100070 | chr10:32963877-32991873 |
27996 | 70 | 10 | 728 | 309 | 9 | 0 | 0 | ITGB1 |
| SE_02_298100071 | chr6:69024720-69056271 |
31551 | 71 | 8 | 882 | 33 | 1 | 43 | 41 | ADGRB3 |
| SE_02_298100072 | chr2:27704337-27735795 |
31458 | 72 | 7 | 692 | 399 | 8 | 0 | 449 | MRPL33,SUPT7L,SLC4A1AP |
| SE_02_298100073 | chr13:44709666-44719338 |
9672 | 73 | 6 | 257 | 28 | 0 | 25 | 0 | LINC00330 |
| SE_02_298100074 | chr12:133264943-133265299 |
356 | 74 | 1 | 18 | 0 | 0 | 0 | 0 | ANHX,ZNF268 |
| SE_02_298100075 | chr16:9059953-9078451 |
18498 | 75 | 8 | 798 | 66 | 0 | 8 | 0 | C16ORF72 |
| SE_02_298100076 | chr20:35308720-35327991 |
19271 | 76 | 7 | 477 | 1191 | 16 | 19 | 109 | UQCC1,EIF6,FAM83C-AS1,MMP24-AS1,FAM83C |
| SE_02_298100077 | chr19:18402068-18417961 |
15893 | 77 | 5 | 420 | 510 | 2 | 13 | 0 | GDF15,MIR3189,ISYNA1,LRRC25,SSBP4 |
| SE_02_298100078 | chr6:139567717-139599311 |
31594 | 78 | 9 | 853 | 23 | 3 | 68 | 0 | LOC645434,LOC100132735 |
| SE_02_298100079 | chr12:76015193-76037110 |
21917 | 79 | 6 | 579 | 48 | 1 | 47 | 768 | PHLDA1,NAP1L1 |
| SE_02_298100080 | chr7:130902210-130927007 |
24797 | 80 | 8 | 725 | 55 | 0 | 92 | 115 | LOC100506860,LINC-PINT,MIR29A,MIR29B1 |
| SE_02_298100081 | chr2:44266441-44290130 |
23689 | 81 | 6 | 773 | 141 | 2 | 39 | 374 | SLC3A1 |
| SE_02_298100082 | chr10:93457734-93471909 |
14175 | 82 | 9 | 433 | 104 | 2 | 11 | 0 | MYOF,CEP55 |
| SE_02_298100083 | chr1:16167494-16189858 |
22364 | 83 | 7 | 662 | 814 | 4 | 74 | 0 | RSG1,ARHGEF19,EPHA2 |
| SE_02_298100084 | chr10:100729873-100748178 |
18305 | 84 | 3 | 423 | 51 | 1 | 22 | 238 | PAX2 |
| SE_02_298100085 | chr1:150602666-150621558 |
18892 | 85 | 4 | 455 | 548 | 2 | 36 | 0 | ADAMTSL4-AS1,MCL1,ENSA |
| SE_02_298100086 | chr8:66537271-66561328 |
24057 | 86 | 6 | 630 | 50 | 1 | 41 | 0 | C8ORF46,MYBL1 |
| SE_02_298100087 | chr3:57969236-57985251 |
16015 | 87 | 7 | 478 | 302 | 0 | 0 | 0 | FLNB |
| SE_02_298100088 | chr2:38754948-38775974 |
21026 | 88 | 8 | 709 | 304 | 0 | 13 | 52 | GEMIN6,SRSF7 |
| SE_02_298100089 | chr9:112016215-112044199 |
27984 | 89 | 9 | 695 | 101 | 2 | 100 | 223 | SUSD1,MIR4668,UGCG |
| SE_02_298100090 | chr2:237461522-237484185 |
22663 | 90 | 8 | 654 | 271 | 3 | 38 | 0 | MLPH,MIR6811,COL6A3 |
| SE_02_298100091 | chr10:40541112-40691904 |
150792 | 91 | 52 | 0 | 0 | 0 | 0 | 0 | |
| SE_02_298100092 | chr2:112625070-112642709 |
17639 | 92 | 7 | 496 | 424 | 0 | 51 | 77 | FLJ42351,CHCHD5,SLC20A1 |
| SE_02_298100093 | chr19:11139588-11154057 |
14469 | 93 | 5 | 522 | 169 | 4 | 77 | 261 | SPC24,MIR6886,KANK2 |
| SE_02_298100094 | chr11:65472325-65495645 |
23320 | 94 | 7 | 605 | 1524 | 2 | 160 | 0 | SCYL1,NEAT1,MALAT1,MIR612 |
| SE_02_298100095 | chr13:114113719-114131008 |
17289 | 95 | 6 | 554 | 256 | 2 | 10 | 0 | RASA3 |
| SE_02_298100096 | chr20:62356724-62370127 |
13403 | 96 | 4 | 473 | 306 | 0 | 65 | 353 | LAMA5,RPS21,LAMA5-AS1,MIR4758,CABLES2 |
| SE_02_298100097 | chr8:13351924-13375807 |
23883 | 97 | 9 | 1025 | 307 | 0 | 137 | 0 | DLC1,C8ORF48 |
| SE_02_298100098 | chr10:13704706-13717697 |
12991 | 98 | 6 | 395 | 10 | 1 | 49 | 60 | FRMD4A,PRPF18 |
| SE_02_298100099 | chr19:14507299-14527501 |
20202 | 99 | 4 | 592 | 172 | 0 | 124 | 589 | DNAJB1,PTGER1,MIR639,GIPC1,NDUFB7,TECR |
| SE_02_298100100 | chr7:74478480-74485584 |
7104 | 100 | 4 | 207 | 53 | 0 | 14 | 0 | GTF2IRD1 |
| SE_02_298100101 | chr7:27113404-27124524 |
11120 | 101 | 3 | 245 | 117 | 3 | 36 | 526 | HOXA3,HOXA-AS2,HOXA10,HOXA-AS3,HOXA10-AS,MIR196B,HOXA5,HOXA7,HOXA1,HOXA2,HOXA4,HOXA9,HOTAIRM1,HOXA6 |
| SE_02_298100102 | chr16:30193921-30208880 |
14959 | 102 | 4 | 34 | 13 | 0 | 133 | 1866 | SLX1B,SLX1A-SULT1A3,LOC388242,BOLA2,SULT1A4,CORO1A,LOC613037 |
| SE_02_298100103 | chr6:42781606-42783911 |
2305 | 103 | 1 | 46 | 18 | 0 | 0 | 93 | TBCC,GLTSCR1L |
| SE_02_298100104 | chr22:50807908-50808464 |
556 | 104 | 1 | 0 | 0 | 0 | 0 | 0 | RPL23AP82,RABL2B |
| SE_02_298100105 | chr10:13757786-13778008 |
20222 | 105 | 5 | 627 | 13 | 3 | 70 | 62 | FRMD4A,PRPF18 |
| SE_02_298100106 | chr12:75933914-75952619 |
18705 | 106 | 5 | 441 | 17 | 0 | 51 | 0 | PHLDA1 |
| SE_02_298100107 | chr17:44534117-44547958 |
13841 | 107 | 7 | 333 | 80 | 0 | 10 | 0 | GPATCH8,FZD2 |
| SE_02_298100108 | chr6:69069342-69106243 |
36901 | 108 | 8 | 1028 | 29 | 1 | 43 | 21 | ADGRB3 |
| SE_02_298100109 | chr12:37235347-37266863 |
31516 | 109 | 13 | 0 | 35 | 0 | 0 | 0 | |
| SE_02_298100110 | chr17:82282819-82301404 |
18585 | 110 | 4 | 613 | 395 | 2 | 0 | 432 | SLC16A3,CD7,CSNK1D,MIR6787,SECTM1 |
| SE_02_298100111 | chr14:76949371-76963324 |
13953 | 111 | 6 | 379 | 124 | 0 | 59 | 0 | IRF2BPL |
| SE_02_298100112 | chr16:11362747-11371664 |
8917 | 112 | 6 | 409 | 140 | 1 | 17 | 0 | RMI2 |
| SE_02_298100113 | chr12:65633287-65654754 |
21467 | 113 | 6 | 591 | 81 | 0 | 83 | 0 | LOC100507065 |
| SE_02_298100114 | chr18:80262925-80263259 |
334 | 114 | 1 | 0 | 0 | 0 | 0 | 0 | PARD6G |
| SE_02_298100115 | chr19:45424937-45450708 |
25771 | 115 | 5 | 706 | 262 | 0 | 22 | 0 | MIR6088,CD3EAP,PPP1R13L,PPM1N,FOSB,ERCC1,RTN2 |
| SE_02_298100116 | chr15:70785106-70803661 |
18555 | 116 | 8 | 584 | 278 | 0 | 43 | 0 | LRRC49,LARP6,UACA |
| SE_02_298100117 | chr10:102642370-102644958 |
2588 | 117 | 1 | 43 | 17 | 0 | 66 | 141 | TRIM8 |
| SE_02_298100118 | chr17:48541509-48555946 |
14437 | 118 | 3 | 339 | 300 | 1 | 103 | 1489 | HOXB3,HOXB2,HOXB-AS1,HOXB-AS3,HOXB1,MIR10A,HOXB6,HOXB4,HOXB5 |
| SE_02_298100119 | chr8:89822727-89841472 |
18745 | 119 | 6 | 495 | 229 | 0 | 16 | 0 | OSGIN2 |
| SE_02_298100120 | chr6:161460658-161484222 |
23564 | 120 | 7 | 766 | 19 | 6 | 43 | 0 | PARK2,AGPAT4 |
| SE_02_298100121 | chr6:158849041-158865167 |
16126 | 121 | 6 | 429 | 84 | 2 | 11 | 120 | OSTCP1,EZR,C6ORF99,EZR-AS1 |
| SE_02_298100122 | chr20:53610583-53625884 |
15301 | 122 | 6 | 387 | 4 | 0 | 33 | 0 | ZNF217,LOC101927770 |
| SE_02_298100123 | chr1:234614768-234640867 |
26099 | 123 | 7 | 721 | 164 | 2 | 0 | 312 | LINC00184,LOC101927787,IRF2BP2 |
| SE_02_298100124 | chr4:74626797-74665360 |
38563 | 124 | 6 | 1148 | 26 | 0 | 15 | 0 | BTC |
| SE_02_298100125 | chrX:40104559-40109986 |
5427 | 125 | 2 | 76 | 1 | 0 | 19 | 0 | BCOR |
| SE_02_298100126 | chr17:72602183-72613371 |
11188 | 126 | 4 | 323 | 34 | 0 | 25 | 164 | LINC00511,LINC00673 |
| SE_02_298100127 | chr2:70107510-70121956 |
14446 | 127 | 6 | 371 | 219 | 0 | 7 | 0 | PCBP1,LOC100133985,PCBP1-AS1 |
| SE_02_298100128 | chr22:46070081-46080673 |
10592 | 128 | 3 | 321 | 17 | 1 | 21 | 0 | PRR34,MIR3619,LINC00899,PRR34-AS1,MIRLET7BHG,MIRLET7A3,MIR4763,MIRLET7B |
| SE_02_298100129 | chr21:43581754-43599837 |
18083 | 129 | 10 | 370 | 132 | 1 | 21 | 49 | HSF2BP,MIR6070 |
| SE_02_298100130 | chr13:95253666-95272687 |
19021 | 130 | 4 | 584 | 81 | 4 | 42 | 139 | ABCC4 |
| SE_02_298100131 | chr7:81668654-81711942 |
43288 | 131 | 6 | 1060 | 7 | 1 | 69 | 262 | LOC100128317,HGF |
| SE_02_298100132 | chr1:201451524-201464103 |
12579 | 132 | 5 | 384 | 132 | 7 | 46 | 0 | CSRP1,TNNI1,PHLDA3 |
| SE_02_298100133 | chr19:6603568-6612898 |
9330 | 133 | 4 | 300 | 23 | 0 | 0 | 0 | CD70 |
| SE_02_298100134 | chr14:77025623-77034178 |
8555 | 134 | 3 | 274 | 100 | 6 | 11 | 755 | IRF2BPL,LOC283575,LOC102724190 |
| SE_02_298100135 | chr17:1485253-1488486 |
3233 | 135 | 1 | 94 | 41 | 0 | 13 | 337 | MYO1C,PITPNA-AS1,INPP5K,CRK |
| SE_02_298100136 | chr12:54256774-54269466 |
12692 | 136 | 5 | 292 | 32 | 0 | 39 | 175 | CBX5,NFE2,MIR3198-2,HNRNPA1 |
| SE_02_298100137 | chr7:5592170-5597646 |
5476 | 137 | 3 | 182 | 55 | 0 | 28 | 294 | FSCN1 |
| SE_02_298100138 | chr2:108585810-108597962 |
12152 | 138 | 4 | 320 | 177 | 0 | 0 | 64 | LIMS1 |
| SE_02_298100139 | chr1:228622502-228642351 |
19849 | 139 | 10 | 59 | 2 | 0 | 3 | 0 | MIR7641-2,RNA5S10,RNA5S9,RNA5S1,RNA5S2,RNA5S3,RNA5S4,RHOU,RNA5S5,RNA5S6,DUSP5P1,RNA5S15 |
| SE_02_298100140 | chr17:3793760-3805343 |
11583 | 140 | 3 | 461 | 14 | 2 | 63 | 95 | ITGAE,C17ORF85 |
| SE_02_298100141 | chr1:94313500-94334254 |
20754 | 141 | 9 | 525 | 87 | 1 | 2 | 0 | ARHGAP29 |
| SE_02_298100142 | chr2:43219519-43227768 |
8249 | 142 | 2 | 284 | 35 | 0 | 4 | 960 | LINC01126,ZFP36L2 |
| SE_02_298100143 | chr1:156105754-156122067 |
16313 | 143 | 3 | 358 | 173 | 3 | 122 | 227 | LMNA,RAB25,SEMA4A,MEX3A |
| SE_02_298100144 | chr7:76281360-76294682 |
13322 | 144 | 5 | 367 | 97 | 0 | 19 | 1096 | SRRM3,HSPB1 |
| SE_02_298100145 | chr11:385210-412808 |
27598 | 145 | 6 | 901 | 783 | 1 | 194 | 2557 | SIGIRR,PKP3,B4GALNT4,PTDSS2,ANO9 |
| SE_02_298100146 | chr7:76365237-76379177 |
13940 | 146 | 3 | 376 | 498 | 0 | 32 | 0 | YWHAG,ZP3,SSC4D |
| SE_02_298100147 | chr7:128530426-128532300 |
1874 | 147 | 1 | 40 | 87 | 0 | 21 | 0 | METTL2B |
| SE_02_298100148 | chr6:21587691-21596239 |
8548 | 148 | 2 | 196 | 3 | 0 | 149 | 510 | SOX4 |
| SE_02_298100149 | chr10:21279523-21295386 |
15863 | 149 | 4 | 437 | 26 | 0 | 49 | 0 | RNU6-15P |
| SE_02_298100150 | chr2:231706434-231711081 |
4647 | 150 | 2 | 208 | 54 | 1 | 0 | 493 | PTMA,MIR1244-2 |
| SE_02_298100151 | chr12:65729070-65744700 |
15630 | 151 | 4 | 432 | 6 | 0 | 10 | 0 | HMGA2 |
| SE_02_298100152 | chr1:17186363-17208638 |
22275 | 152 | 8 | 817 | 185 | 0 | 0 | 121 | PADI1,PADI3 |
| SE_02_298100153 | chr7:5548995-5556926 |
7931 | 153 | 3 | 275 | 30 | 0 | 7 | 0 | FSCN1,FBXL18,LOC221946,ACTB |
| SE_02_298100154 | chr17:57893644-57906955 |
13311 | 154 | 4 | 356 | 44 | 0 | 41 | 147 | CUEDC1,MRPS23 |
| SE_02_298100155 | chr16:57835670-57844410 |
8740 | 155 | 4 | 222 | 25 | 1 | 48 | 0 | LOC388282,KIFC3 |
| SE_02_298100156 | chr6:26160427-26178140 |
17713 | 156 | 4 | 439 | 329 | 5 | 1 | 55 | HIST1H2BD,HIST1H2AC,HIST1H2BC,HIST1H3E,HIST1H2BE,HIST1H4D,HIST1H2BG,HIST1H2BF,HIST1H2AE,HIST1H4E,HIST1H1E,HIST1H2AD |
| SE_02_298100157 | chr5:57813761-57838497 |
24736 | 157 | 6 | 673 | 28 | 1 | 8 | 0 | LOC101928539 |
| SE_02_298100158 | chr16:21517428-21522757 |
5329 | 158 | 2 | 153 | 20 | 0 | 0 | 512 | SLC7A5P2,SMG1P3,MIR3680-1 |
| SE_02_298100159 | chr6:35383629-35391006 |
7377 | 159 | 4 | 178 | 131 | 5 | 16 | 0 | PPARD |
| SE_02_298100160 | chr1:31940912-31956925 |
16013 | 160 | 5 | 443 | 60 | 0 | 0 | 0 | PTP4A2 |
| SE_02_298100161 | chr6:113855090-113871489 |
16399 | 161 | 3 | 360 | 55 | 0 | 5 | 870 | LINC01268,MARCKS,FLJ34503 |
| SE_02_298100162 | chr1:205292862-205302922 |
10060 | 162 | 5 | 286 | 126 | 2 | 6 | 155 | NUAK2,TMCC2 |
| SE_02_298100163 | chr19:43756872-43766239 |
9367 | 163 | 6 | 258 | 336 | 1 | 0 | 0 | KCNN4,IRGC,SMG9,LYPD5 |
| SE_02_298100164 | chr20:62619672-62629661 |
9989 | 164 | 7 | 0 | 46 | 0 | 23 | 0 | SLCO4A1,SLCO4A1-AS1 |
| SE_02_298100165 | chr11:65902336-65914656 |
12320 | 165 | 3 | 301 | 290 | 1 | 0 | 0 | MUS81,SART1,TSGA10IP,CCDC85B,CTSW,EFEMP2,DRAP1,C11ORF68,FIBP,CFL1,FOSL1 |
| SE_02_298100166 | chr17:81342687-81346823 |
4136 | 166 | 4 | 117 | 28 | 0 | 0 | 0 | LINC00482,LOC100130370,TMEM105,SLC38A10 |
| SE_02_298100167 | chr10:34720153-34734684 |
14531 | 167 | 3 | 434 | 312 | 1 | 27 | 0 | PARD3 |
| SE_02_298100168 | chr6:44033111-44051623 |
18512 | 168 | 5 | 538 | 71 | 1 | 156 | 0 | LOC101929705,C6ORF223 |
| SE_02_298100169 | chr12:42788272-42809299 |
21027 | 169 | 5 | 551 | 83 | 1 | 7 | 0 | LOC101927058,PRICKLE1 |
| SE_02_298100170 | chr1:26989375-27001578 |
12203 | 170 | 3 | 278 | 101 | 0 | 0 | 560 | TRNP1,KDF1,FAM46B |
| SE_02_298100171 | chr6:42215019-42224578 |
9559 | 171 | 3 | 293 | 301 | 5 | 40 | 76 | MRPS10,GUCA1B |
| SE_02_298100172 | chr2:87395905-87431368 |
35463 | 172 | 13 | 245 | 37 | 0 | 74 | 0 | LINC00152 |
| SE_02_298100173 | chr7:2623362-2634523 |
11161 | 173 | 3 | 380 | 108 | 0 | 8 | 219 | TTYH3,AMZ1 |
| SE_02_298100174 | chr7:3941894-3954443 |
12549 | 174 | 6 | 495 | 20 | 1 | 0 | 154 | SDK1 |
| SE_02_298100175 | chr7:157302765-157312121 |
9356 | 175 | 4 | 298 | 30 | 0 | 0 | 0 | DNAJB6 |
| SE_02_298100176 | chr6:2856419-2870493 |
14074 | 176 | 5 | 763 | 349 | 2 | 4 | 0 | SERPINB9P1,SERPINB9,SERPINB1,LOC101927730,MIR4645 |
| SE_02_298100177 | chr8:54140276-54152852 |
12576 | 177 | 3 | 311 | 178 | 0 | 40 | 204 | MRPL15,LYPLA1 |
| SE_02_298100178 | chr1:223698677-223709683 |
11006 | 178 | 4 | 284 | 126 | 0 | 17 | 80 | CAPN2,CAPN8 |
| SE_02_298100179 | chr6:26120072-26126161 |
6089 | 179 | 3 | 235 | 406 | 8 | 50 | 220 | HIST1H2AC,HIST1H2BC,HFE,HIST1H2BD,HIST1H1E,HIST1H1T,HIST1H4C |
| SE_02_298100180 | chr19:40420817-40433344 |
12527 | 180 | 3 | 350 | 141 | 1 | 44 | 363 | SERTAD1,SPTBN4,PRX,SERTAD3,BLVRB,HIPK4 |
| SE_02_298100181 | chr19:37996817-38003194 |
6377 | 181 | 4 | 181 | 33 | 0 | 1 | 0 | SIPA1L3 |
| SE_02_298100182 | chr7:74271956-74280655 |
8699 | 182 | 4 | 273 | 103 | 0 | 0 | 0 | CLIP2,RFC2 |
| SE_02_298100183 | chr15:96340701-96357355 |
16654 | 183 | 6 | 417 | 2 | 0 | 51 | 0 | NR2F2,NR2F2-AS1,MIR1469 |
| SE_02_298100184 | chr20:25222539-25241635 |
19096 | 184 | 6 | 617 | 1144 | 2 | 35 | 606 | ENTPD6,LOC101926889,PYGB |
| SE_02_298100185 | chr13:22878685-22891347 |
12662 | 185 | 7 | 421 | 244 | 0 | 0 | 0 | BASP1P1 |
| SE_02_298100186 | chr6:26047149-26066832 |
19683 | 186 | 4 | 580 | 668 | 8 | 28 | 174 | HIST1H1C,HFE,HIST1H2AB,HIST1H3C,HIST1H1A,HIST1H3A,HIST1H1T,HIST1H4B,HIST1H2BB,HIST1H4C,HIST1H3B,HIST1H4A |
| SE_02_298100187 | chr1:100615145-100642785 |
27640 | 187 | 6 | 881 | 731 | 3 | 35 | 173 | LINC01349,EXTL2 |
| SE_02_298100188 | chr1:1059313-1081210 |
21897 | 188 | 5 | 681 | 485 | 2 | 19 | 1276 | RNF223,C1ORF159,ISG15,AGRN |
| SE_02_298100189 | chr8:26448691-26457807 |
9116 | 189 | 3 | 258 | 31 | 1 | 24 | 0 | PNMA2 |
| SE_02_298100190 | chr12:10009-10279 |
270 | 190 | 1 | 1 | 0 | 0 | 0 | 0 | LOC100288778 |
| SE_02_298100191 | chr6:157147020-157148201 |
1181 | 191 | 1 | 21 | 0 | 0 | 1 | 0 | ARID1B,TMEM242 |
| SE_02_298100192 | chr21:44913037-44933138 |
20101 | 192 | 3 | 770 | 474 | 3 | 13 | 881 | ITGB2-AS1,ITGB2,FAM207A,LINC01547,PTTG1IP |
| SE_02_298100193 | chr16:38265814-38280645 |
14831 | 193 | 4 | 0 | 0 | 0 | 0 | 0 | |
| SE_02_298100194 | chr8:32231517-32243518 |
12001 | 194 | 6 | 346 | 1 | 1 | 11 | 0 | NRG1,NRG1-IT3 |
| SE_02_298100195 | chr11:66326649-66338587 |
11938 | 195 | 2 | 380 | 482 | 0 | 115 | 1479 | BRMS1,RIN1,CD248,CNIH2,SLC29A2,B4GAT1,TMEM151A,YIF1A |
| SE_02_298100196 | chr5:142356589-142365401 |
8812 | 196 | 6 | 267 | 32 | 0 | 15 | 0 | LOC101926941,SPRY4,SPRY4-IT1 |
| SE_02_298100197 | chr1:26691235-26698068 |
6833 | 197 | 2 | 138 | 77 | 1 | 12 | 569 | ARID1A |
| SE_02_298100198 | chr10:69055647-69061394 |
5747 | 198 | 3 | 142 | 23 | 0 | 13 | 0 | SRGN |
| SE_02_298100199 | chr2:108635078-108650718 |
15640 | 199 | 5 | 455 | 251 | 0 | 5 | 0 | LIMS1 |
| SE_02_298100200 | chr1:39175755-39190739 |
14984 | 200 | 6 | 363 | 311 | 1 | 57 | 32 | MACF1,NDUFS5 |
| SE_02_298100201 | chr9:60549665-60687168 |
137503 | 201 | 37 | 0 | 1 | 0 | 0 | 0 | SPATA31A5 |
| SE_02_298100202 | chr19:14248018-14257048 |
9030 | 202 | 3 | 280 | 14 | 0 | 2 | 0 | ADGRL1 |
| SE_02_298100203 | chr2:231666615-231682021 |
15406 | 203 | 4 | 463 | 28 | 2 | 21 | 0 | PTMA,MIR1244-2 |
| SE_02_298100204 | chr7:73848757-73852419 |
3662 | 204 | 4 | 86 | 83 | 0 | 0 | 0 | CLDN4,WBSCR27,WBSCR28 |
| SE_02_298100205 | chr20:63682861-63700049 |
17188 | 205 | 4 | 832 | 397 | 6 | 0 | 2735 | RTEL1,RTEL1-TNFRSF6B,TNFRSF6B,ARFRP1,ZGPAT,LIME1,STMN3,SLC2A4RG |
| SE_02_298100206 | chr1:178261721-178277308 |
15587 | 206 | 5 | 384 | 126 | 0 | 31 | 0 | RASAL2,RASAL2-AS1 |
| SE_02_298100207 | chr8:23342457-23355904 |
13447 | 207 | 5 | 491 | 345 | 3 | 7 | 0 | LOXL2,LOC100507156 |
| SE_02_298100208 | chr7:151245320-151252268 |
6948 | 208 | 2 | 154 | 51 | 0 | 0 | 320 | SMARCD3,CHPF2,MIR671,ABCF2,IQCA1L |
| SE_02_298100209 | chr20:35208626-35216338 |
7712 | 209 | 4 | 185 | 170 | 4 | 3 | 0 | PROCR,MMP24 |
| SE_02_298100210 | chr1:226109787-226128587 |
18800 | 210 | 4 | 446 | 266 | 0 | 78 | 0 | H3F3A,H3F3AP4 |
| SE_02_298100211 | chr3:149574813-149585391 |
10578 | 211 | 6 | 260 | 15 | 2 | 0 | 0 | WWTR1 |
| SE_02_298100212 | chr17:43361928-43369637 |
7709 | 212 | 2 | 296 | 872 | 3 | 55 | 0 | ARL4D,LINC00910 |
| SE_02_298100213 | chr11:59536810-59550367 |
13557 | 213 | 7 | 303 | 150 | 0 | 19 | 0 | OR4D9,MIR3162,OR4D11,OSBP |
| SE_02_298100214 | chr9:129550016-129569534 |
19518 | 214 | 3 | 648 | 64 | 0 | 30 | 0 | NTMT1 |
| SE_02_298100215 | chr22:29619023-29625392 |
6369 | 215 | 4 | 153 | 126 | 0 | 21 | 0 | NF2,NIPSNAP1 |
| SE_02_298100216 | chr3:138823176-138834928 |
11752 | 216 | 3 | 282 | 120 | 3 | 0 | 0 | PIK3CB,LINC01391 |
| SE_02_298100217 | chr16:85553003-85556944 |
3941 | 217 | 3 | 103 | 2 | 0 | 9 | 0 | GSE1 |
| SE_02_298100218 | chr3:150408200-150410886 |
2686 | 218 | 1 | 62 | 6 | 0 | 0 | 454 | TSC22D2 |
| SE_02_298100219 | chr2:152487786-152504679 |
16893 | 219 | 5 | 485 | 144 | 0 | 119 | 0 | FMNL2 |
| SE_02_298100220 | chr17:2392897-2399327 |
6430 | 220 | 4 | 197 | 116 | 0 | 17 | 414 | MNT,LOC284009 |
| SE_02_298100221 | chr7:151651233-151663019 |
11786 | 221 | 3 | 349 | 33 | 2 | 5 | 0 | PRKAG2 |
| SE_02_298100222 | chr18:3596101-3607122 |
11021 | 222 | 4 | 298 | 78 | 1 | 16 | 458 | DLGAP1,DLGAP1-AS2,DLGAP1-AS1 |
| SE_02_298100223 | chr20:53770609-53787710 |
17101 | 223 | 4 | 529 | 8 | 4 | 49 | 0 | SUMO1P1 |
| SE_02_298100224 | chr19:38650694-38659425 |
8731 | 224 | 5 | 242 | 176 | 1 | 24 | 0 | ACTN4,EIF3K,MAP4K1 |
| SE_02_298100225 | chrX:23882832-23898159 |
15327 | 225 | 5 | 332 | 53 | 0 | 10 | 0 | APOO,CXORF58 |
| SE_02_298100226 | chr2:30096056-30113550 |
17494 | 226 | 4 | 499 | 12 | 0 | 62 | 0 | YPEL5 |
| SE_02_298100227 | chr7:101631789-101638997 |
7208 | 227 | 5 | 252 | 24 | 0 | 6 | 0 | MYL10 |
| SE_02_298100228 | chr17_GL383566v1_alt:71651-80397 |
8746 | 228 | 5 | 0 | 0 | 0 | 0 | 0 | |
| SE_02_298100229 | chr4:190122722-190123072 |
350 | 229 | 1 | 2 | 0 | 0 | 0 | 0 | DUX4 |
| SE_02_298100230 | chr17:17834729-17840788 |
6059 | 230 | 3 | 142 | 154 | 1 | 28 | 164 | SREBF1,MIR6777,MIR33B |
| SE_02_298100231 | chr3:138944876-138950363 |
5487 | 231 | 2 | 117 | 11 | 1 | 0 | 899 | FOXL2,FOXL2NB,LINC01391 |
| SE_02_298100232 | chr14:61559072-61584288 |
25216 | 232 | 5 | 656 | 81 | 5 | 65 | 869 | LOC101927780,FLJ22447,HIF1A |
| SE_02_298100233 | chr10:33131251-33144305 |
13054 | 233 | 8 | 449 | 143 | 5 | 0 | 0 | ITGB1 |
| SE_02_298100234 | chr10:71859630-71870424 |
10794 | 234 | 3 | 315 | 109 | 1 | 26 | 48 | PSAP,CDH23 |
| SE_02_298100235 | chr6:139532404-139543063 |
10659 | 235 | 5 | 280 | 6 | 0 | 6 | 0 | LOC645434,CITED2 |
| SE_02_298100236 | chr17:48962078-48973820 |
11742 | 236 | 3 | 353 | 477 | 1 | 17 | 237 | GIP,SNF8,IGF2BP1 |
| SE_02_298100237 | chr1:3530839-3547748 |
16909 | 237 | 5 | 656 | 32 | 0 | 0 | 212 | MEGF6,MIR551A |
| SE_02_298100238 | chr16:29822721-29826939 |
4218 | 238 | 4 | 106 | 153 | 0 | 81 | 0 | MVP,CDIPT,KIF22,MAZ,PRRT2,CDIPT-AS1,PAGR1,ZG16 |
| SE_02_298100239 | chr19:18291529-18305495 |
13966 | 239 | 3 | 412 | 127 | 0 | 12 | 0 | PDE4C,LSM4,JUND,PGPEP1,LOC729966,MIR3188,KIAA1683 |
| SE_02_298100240 | chr16:87780986-87789545 |
8559 | 240 | 4 | 345 | 36 | 0 | 12 | 0 | KLHDC4,LOC102724467,MIR6775 |
| SE_02_298100241 | chr11:118914284-118930085 |
15801 | 241 | 4 | 382 | 209 | 2 | 139 | 0 | MIR4492,CXCR5,BCL9L,UPK2,FOXR1 |
| SE_02_298100242 | chr10:79068916-79071190 |
2274 | 242 | 1 | 52 | 14 | 0 | 6 | 137 | ZMIZ1,ZMIZ1-AS1 |
| SE_02_298100243 | chr19:4058587-4065887 |
7300 | 243 | 3 | 213 | 32 | 0 | 64 | 149 | ZBTB7A |
| SE_02_298100244 | chr17:57861366-57879066 |
17700 | 244 | 3 | 520 | 70 | 5 | 30 | 1139 | CUEDC1,MRPS23 |
| SE_02_298100245 | chr12:122670082-122680656 |
10574 | 245 | 4 | 315 | 286 | 0 | 29 | 0 | HCAR3,HCAR2,HCAR1 |
| SE_02_298100246 | chr20:50760771-50765513 |
4742 | 246 | 4 | 119 | 23 | 0 | 0 | 0 | BCAS4,PARD6B |
| SE_02_298100247 | chr19:16337879-16343232 |
5353 | 247 | 4 | 136 | 29 | 0 | 18 | 0 | KLF2 |
| SE_02_298100248 | chr1:17125429-17131026 |
5597 | 248 | 4 | 131 | 64 | 0 | 0 | 0 | PADI2 |
| SE_02_298100249 | chr7:151746586-151755221 |
8635 | 249 | 4 | 253 | 8 | 1 | 4 | 0 | PRKAG2 |
| SE_02_298100250 | chr10:4807481-4815526 |
8045 | 250 | 5 | 236 | 74 | 0 | 31 | 0 | AKR1E2 |
| SE_02_298100251 | chr7:537918-543451 |
5533 | 251 | 2 | 368 | 93 | 0 | 20 | 0 | PDGFA,LOC101927000,HRAT92 |
| SE_02_298100252 | chr5:151694475-151700385 |
5910 | 252 | 3 | 170 | 52 | 1 | 18 | 0 | CTB-113P19.1,SPARC |
| SE_02_298100253 | chr2:84945440-84959260 |
13820 | 253 | 3 | 373 | 41 | 0 | 16 | 0 | TMSB10,KCMF1 |
| SE_02_298100254 | chr3:10192644-10206940 |
14296 | 254 | 4 | 448 | 201 | 0 | 7 | 85 | IRAK2,TATDN2 |
| SE_02_298100255 | chr17:77321361-77324039 |
2678 | 255 | 3 | 95 | 10 | 0 | 0 | 0 | SEPT9 |
| SE_02_298100256 | chr5:160081157-160088531 |
7374 | 256 | 3 | 185 | 13 | 0 | 21 | 0 | PWWP2A |
SE annotation visualization
Information description of sample and annotation
| Case ID: | Name:GSM8620772 |
| Input ID: | Name:GSM8620776 |
| Common SNP: | dbSNP |
| eQTL: | GTEx, HaploReg v4.1, PancanQTL |
| Risk SNP : | GWAS Catalog, GWASdb v2.0 |
| TFBS: | TFBS Conserved of UCSC |
| CRISPR/Cas9 target site: | CRISPR Targets of UCSC |
Software and parameters used
| Read Mapping: | bowtie(v2.4.4) -p 10 -x -S -U |
| Peak Calling: | macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto |
| Stitching Distance: | 12.5 kb |
| TSS Exclusive Zone: | +/- 2 kb |