SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_298100101
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: tumor
Biosample name: VAESBJ_DOX
Genomic region: chr7:27113404-27124524
Size: 11120
Super-enhancer rank 101
Number of SE elements: 3
ChIP density(Case|Control): 18543.712|4233.384
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HOXA3 ;
ROSE Overlap HOXA3 ; HOXA-AS2 ;
ROSE Proximal HOXA10 ; HOXA-AS3 ; HOXA10-AS ; MIR196B ; HOXA5 ; HOXA7 ; HOXA1 ; HOXA2 ; HOXA4 ; HOXA9 ; HOTAIRM1 ; HOXA6 ;
ROSE Closest HOXA3 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_298100101 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers