Download Expression Profile of Each Dataset

Knock-Method TF Species TF Class TF Superclass Biosample Name Tissue
Type
Biosample Type Data Source Profile ID Platform Pubmed ID Download
siRNA NFYB Homo sapiens Heteromeric CCAAT-binding factors Other all-alpha-helical DNA-binding domains U2OS ER-HA-E2F1 Bone_marrow Cell line GEO GSE61272 GPL571 26039627 txt
siRNA SOX2 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains H520 Lung Cell line GEO GSE48871 GPL6947 24477565 txt
siRNA SOX4 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains ST1 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE38021 GPL570 23482931 txt
siRNA UBTF Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR312FIT - 22955616 txt
siRNA SOX2 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Undifferentiated hESCs Embryo Stem cell GEO GSE67993 GPL10558 26748419 txt
siRNA SOX2 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains NTera-2 Embryo Cell line GEO GSE59234 GPL6244 25156079 txt
siRNA TCF7L1 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains H9 Embryo Stem cell GEO GSE69911 GPL6244 29361574 txt
siRNA SOX2 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains 2102Ep Embryo Cell line GEO GSE59234 GPL6244 25156079 txt
siRNA SOX2 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains LN229 Central_
nervous_
system
Cell line GEO GSE23838 GPL1426 21211035 txt
siRNA NFYA Homo sapiens Heteromeric CCAAT-binding factors Other all-alpha-helical DNA-binding domains MDA-MB231 Mammary_
gland
Cell line GEO GSE18849 GPL4133 20005852 txt
siRNA NFYB Homo sapiens Heteromeric CCAAT-binding factors Other all-alpha-helical DNA-binding domains SUDHL6 DLBCL Lymph Cell line GEO GSE66714 GPL10558 26589882 txt
siRNA SOX2 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains LK2 Lung Cell line GEO GSE48871 GPL6947 24477565 txt
siRNA HSF1 Homo sapiens Heat shock factors Helix-turn-helix domains HSC3 Upper_
aerodigestive_
tract
Cell line GEO GSE38058 GPL570 - txt
siRNA HSF2 Homo sapiens Heat shock factors Helix-turn-helix domains A375 Skin Cell line GEO GSE31534 GPL570 22536322 txt
siRNA HSF1 Homo sapiens Heat shock factors Helix-turn-helix domains PC3 Prostate Cell line GEO GSE48672 GPL10558 26119944 txt
siRNA HSF2 Homo sapiens Heat shock factors Helix-turn-helix domains PC3 Prostate Cell line GEO GSE48672 GPL10558 26119944 txt
siRNA HSF2 Homo sapiens Heat shock factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA HSF1 Homo sapiens Heat shock factors Helix-turn-helix domains HepG2 Liver Cell line GEO GSE51498 GPL6244 26438876 txt
siRNA GRHL3 Homo sapiens Grainyhead domain factors Immunoglobulin fold Primary neonatal keratinocytes Skin Primary cell GEO GSE37049 GPL6244 22829784 txt
siRNA GRHL3 Homo sapiens Grainyhead domain factors Immunoglobulin fold NHEK Skin Cell line GEO GSE94465 GPL6244 28445475 txt
siRNA E2F7 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains SCC25 Upper_
aerodigestive_
tract
Cell line GEO GSE58074 GPL10558 26018753 25411162 txt
siRNA FOXP1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains HUVEC Umbilical_
vein
Cell line GEO GSE32968 GPL6480 24023716 txt
siRNA SOX17 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains HUVEC Umbilical_
vein
Cell line GEO GSE75380 GPL13497 - txt
siRNA TLX1 Homo sapiens Homeo domain factors Helix-turn-helix domains ALLSIL Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE62141 GPL19197 26108691 txt
siRNA PROX1 Homo sapiens Homeo domain factors Helix-turn-helix domains Primary lymphatic endothelial cells Foreskin Primary cell GEO GSE12846 GPL570 18815287 txt
siRNA PITX2 Homo sapiens Homeo domain factors Helix-turn-helix domains TM2 Eye Primary cell GEO GSE27275 GPL6883 - txt
siRNA PITX2 Homo sapiens Homeo domain factors Helix-turn-helix domains TM1 Eye Primary cell GEO GSE27275 GPL6883 - txt
siRNA CDX2 Homo sapiens Homeo domain factors Helix-turn-helix domains COLO320 Colon Cell line GEO GSE30181 GPL4133 23112155 txt
siRNA ZEB1 Homo sapiens Homeo domain factors Helix-turn-helix domains HeLa229 Cervix Cell line GEO GSE57660 GPL570 24845104 txt
siRNA HOXD9 Homo sapiens Homeo domain factors Helix-turn-helix domains U87 Central_
nervous_
system
Cell line GEO GSE28618 GPL570 21600039 txt
siRNA OTX2 Homo sapiens Homeo domain factors Helix-turn-helix domains Neural precursor cells Brain Cell line GEO GSE66671 GPL16686 - txt
siRNA POU5F1 Homo sapiens Homeo domain factors Helix-turn-helix domains GBS6 Bone_marrow Cell line GEO GSE12320 GPL570 20203285 txt
siRNA SOX7 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains HUVEC Umbilical_
vein
Cell line GEO GSE75380 GPL13497 - txt
siRNA FOXO1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains HUVEC Umbilical_
vein
Cell line GEO GSE67390 GPL10558 28904225 txt
siRNA SOX17 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains HUVEC Umbilical_
vein
Cell line GEO GSE37395 GPL10332 23241958 txt
siRNA SOX9 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains VCaP Prostate Cell line GEO GSE76441 GPL570 27043282 txt
siRNA SOX9 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains VCaP Prostate Cell line GEO GSE76452 GPL570 27043282 txt
siRNA SSRP1 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains BE(2)C cells Neuroblastoma Cell line GEO GSE71059 GPL16686 26537256 txt
siRNA SOX4 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains MDA-LM2 Mammary_
gland
Cell line GEO GSE79202 GPL10558 N txt
siRNA SOX2 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains GSC-11 Mammary_
gland
Cell line GEO GSE79302 GPL13607 27669421 txt
siRNA SOX11 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Granta 519 Lymph Cell line GEO GSE25621 GPL6244 21124928 txt
siRNA LEF1 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains BL2 Lymph Cell line GEO GSE42637 GPL570 23375451 txt
siRNA SOX11 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains NHLF Lung_fibroblast Cell line GEO GSE104937 GPL20844 30076218 txt
siRNA SOX11 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains NHLF Lung_fibroblast Cell line GEO GSE124781 GPL20844 31505128 txt
siRNA FOXM1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains Vascular smooth muscle cells Aorta Tissue GEO GSE17543 GPL570 19835856 txt
siRNA FOXM1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains SUDHL6 DLBCL Lymph Cell line GEO GSE66714 GPL10558 26589882 txt
siRNA FOXC2 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains Lymphatic endothelial cells Lymph Primary cell GEO GSE60152 GPL6244 26389677 txt
siRNA FOXP1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains OCI-Ly7 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE51382 GPL570 25267198 txt
siRNA FOXP1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains OCI-Ly10 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE51382 GPL570 25267198 txt
siRNA FOXP1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains OCI-Ly1 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE51382 GPL570 25267198 txt
siRNA E2F4 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR874ZXG - 22955616 txt
siRNA E2F6 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR820EGA - 22955616 txt
siRNA E2F1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains HeLa Cervix Cell line GEO GSE22209 GPL10379 20348445 txt
siRNA FOXK1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains HeLa Cervix Cell line GEO GSE67810 GPL6244 29186685 txt
siRNA FOXM1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains U87 Central_
nervous_
system
Cell line GEO GSE40051 GPL570 22977194 txt
siRNA FOXM1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains BT-20 cells Mammary_
gland
Cell line GEO GSE2222 GPL96 15958562 txt
siRNA TET1 Homo sapiens CXXC zinc finger factors Zinc-coordinating DNA-binding domains NCCIT Embryo Cell line GEO GSE51901 GPL6244 24958354 txt
siRNA YBX1 Homo sapiens Cold-shock domain factors beta-Barrel DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE28433 GPL6104 22205655 txt
siRNA YBX1 Homo sapiens Cold-shock domain factors beta-Barrel DNA-binding domains A549 Lung Cell line GEO GSE28433 GPL6104 22205655 txt
siRNA YBX1 Homo sapiens Cold-shock domain factors beta-Barrel DNA-binding domains HCT116 Colon Cell line GEO GSE28433 GPL6104 22205655 txt
siRNA HTATIP Homo sapiens C2HC zinc finger factors Zinc-coordinating DNA-binding domains LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA LYAR Homo sapiens C2HC zinc finger factors Zinc-coordinating DNA-binding domains BE(2)C cells Neuroblastoma Cell line GEO GSE90139 GPL16686 N txt
siRNA REST Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Smooth muscle cells Uterus In vitro differentiated cell GEO GSE41386 GPL570 23284171 txt
siRNA EGR3 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HUVEC Umbilical_
vein
Cell line GEO GSE18913 GPL570 19965691 txt
siRNA KLF5 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains YCC3 Stomach Cell line GEO GSE51706 GPL570 25053715 txt
siRNA KLF5 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains KatoIII Stomach Cell line GEO GSE51706 GPL570 25053715 txt
siRNA FOXM1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE55204 GPL96 25213081 txt
siRNA FOXO1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains primary human dermal lymphatic endothelial cells Skin Primary cell GEO GSE142608 GPL16699 N txt
siRNA FOXD1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains Fibroblast Skin Primary cell GEO GSE44305 GPL10558 25013174 txt
siRNA FOXM1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains A375 Skin Cell line GEO GSE31534 GPL570 22536322 txt
siRNA FOXA1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains LNCaP Prostate Cell line GEO GSE37314 GPL10558 23539448 txt
siRNA FOXA1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains LNCaP Prostate Cell line GEO GSE58309 GPL6244 25228652 txt
siRNA FOXP1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains LNCaP Prostate Cell line GEO GSE58309 GPL6244 25228652 txt
siRNA FOXA1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains LNCaP Prostate Cell line GEO GSE27682 GPL6102 21572438 txt
siRNA FOXO3 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains PANC1 Pancreas Cell line GEO GSE66404 GPL17077 - txt
siRNA FOXM1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains TE1 Oesophagus Cell line GEO GSE75243 GPL5175 29682174 txt
siRNA FOXF2 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains MDA-MB-231 Mammary_
gland
Cell line GEO GSE55675 GPL18387 30294731 27377963 txt
siRNA NKX2-1 Homo sapiens Homeo domain factors Helix-turn-helix domains H3255 Lung Cell line GEO GSE28480 GPL6947 21907921 txt
siRNA E2F1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA FOXA1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE124270 GPL10558 31390833 txt
siRNA FOXA1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE25315 GPL10558 21151129 txt
siRNA FOXA1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE25316 GPL10558 21151129 txt
siRNA FOXC1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA FOXJ2 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA FOXO1A Homo sapiens Fork head / winged helix factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA FOXO3A Homo sapiens Fork head / winged helix factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA FOXP1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA FOXF2 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains MCF10A Mammary_
gland
Cell line GEO GSE55675 GPL18387 30294731 27377963 txt
siRNA NR2F2 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Primary eutopic stromal cells Uterus Primary cell GEO GSE107469 GPL570 29982401 txt
siRNA GATA2 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains LNCaP Prostate Cell line GEO GSE49342 GPL14550 24448395 txt
siRNA GATA3 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains CD4+ T cells Peripheral_
blood
Primary cell GEO GSE46333 GPL14550 24401939 txt
siRNA GATA3 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains OEC-M1 Oral_cavity Cell line GEO GSE76581 GPL21185 - txt
siRNA GATA3 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE39623 GPL6947 23172872 txt
siRNA GATA3 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA GATA3 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE95165 GPL10558 31409898 txt
siRNA GATA2 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Lymphatic endothelial cells Lymph Primary cell GEO GSE110726 GPL17585 29666442 txt
siRNA GATA4 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains HUH6 Liver Cell line GEO GSE110788 GPL10558 N txt
siRNA GATA2 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains HMVEC Endothelium Cell line GEO GSE28304 GPL570 21666600 txt
siRNA GATA6 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains HT29 Colon Cell line GEO GSE62316 GPL16686 26387746 txt
siRNA GATA6 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains AGS Stomach Cell line GEO GSE51706 GPL570 25053715 txt
siRNA NR3C1 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Endometrial stromal cells Uterus Primary cell GEO GSE42538 GPL6244 23275455 txt
siRNA PGR Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Endometrial stromal cells Uterus Primary cell GEO GSE48853 GPL571 25875046 txt
siRNA ESR1 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Endometrial stromal cell Uterus Primary cell GEO GSE73550 GPL571 26849466 txt
siRNA ESR1 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Endometrial stromal cell Uterus Primary cell GEO GSE73550 GPL6244 26849466 txt
siRNA NR2F2 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains HUVEC Umbilical_
vein
Cell line GEO GSE33301 GPL570 22734039 txt
siRNA AR Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains VCaP Prostate Cell line GEO GSE32892 GPL570 22849360 txt
siRNA AR Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains VCaP Prostate Cell line GEO GSE49285 GPL10558 24847116 txt
siRNA AR Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains R1-D567 Prostate Cell line GEO GSE49196 GPL10904 24101480 txt
siRNA NR2F2 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains PC3 Prostate Cell line GEO GSE33182 GPL570 23201680 txt
siRNA AR Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains LNCaP Prostate Cell line GEO GSE11428 GPL570 19632176 txt
siRNA NFATC3 Homo sapiens Others beta-Scaffold Factors CD4+ T cells Peripheral_
blood
Primary cell GEO GSE46333 GPL14550 24401939 txt
siRNA CHD1 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR181AXM - 22955616 txt
siRNA CHD2 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR261IHP - 22955616 txt
siRNA ATM Homo sapiens Others ENCODE_
TF
HEK293 Embryo_
kidney
Cell line GEO GSE1676 GPL201 15892871 txt
siRNA CTNNB1 Homo sapiens Others Co-activator/repressors LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA CREBBP Homo sapiens Others Co-activator/repressors MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CTNNB1 Homo sapiens Others Co-activator/repressors MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA RB1 Homo sapiens Others Co-activator/repressors MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA RBL2 Homo sapiens Others Co-activator/repressors MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA NPAT Homo sapiens Others Co-activator/repressors U2OS Bone_marrow Cell line GEO GSE69148 GPL20234 27929715 txt
siRNA NPAT Homo sapiens Others Co-activator/repressors hTERT-RPE1 Bone_marrow Cell line GEO GSE69148 GPL20234 27929715 txt
siRNA AR Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains LNCaP Prostate Cell line GEO GSE49285 GPL10558 24847116 txt
siRNA LIN28B Homo sapiens Others beta-Scaffold Factors HEK293 Embryo_
kidney
Cell line GEO GSE44613 GPL570 23481595 txt
siRNA LIN28A Homo sapiens Others beta-Scaffold Factors H9 Embryo Stem cell GEO GSE53038 GPL16699 25479749 txt
siRNA ID1 Homo sapiens Others Basic domains H1650 Lung Cell line GEO GSE38944 GPL570 - txt
siRNA ID1 Homo sapiens Others Basic domains A549 Lung Cell line GEO GSE38944 GPL570 - txt
siRNA GATA2 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Decidual stromal cells Uterus Primary cell GEO GSE108407 GPL570 30245028 txt
siRNA GATA4 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains YCC3 Stomach Cell line GEO GSE51706 GPL570 25053715 txt
siRNA GATA6 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains YCC3 Stomach Cell line GEO GSE51706 GPL570 25053715 txt
siRNA GATA4 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains KatoIII Stomach Cell line GEO GSE51706 GPL570 25053715 txt
siRNA GATA6 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains KatoIII Stomach Cell line GEO GSE51706 GPL570 25053715 txt
siRNA GATA4 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains AGS Stomach Cell line GEO GSE51706 GPL570 25053715 txt
siRNA SATB1 Homo sapiens Homeo domain factors Helix-turn-helix domains CD4+ T cells Peripheral_
blood
Primary cell GEO GSE17241 GPL6106 20522714 txt
siRNA SF1 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains H295R/TR Adrenal_
gland
Cell line GEO GSE43033 GPL6244 23907384 txt
siRNA SRF Homo sapiens MADS box factors alpha-Helices exposed by beta-structures LNCaP Prostate Cell line GEO GSE22606 GPL570 21324924 txt
siRNA MEF2D Homo sapiens MADS box factors alpha-Helices exposed by beta-structures Huh7 Liver Cell line GEO GSE37123 GPL6480 N txt
siRNA HOXA10 Homo sapiens Homeo domain factors Helix-turn-helix domains Endometrial stromal cells Uterus Primary cell GEO GSE35801 GPL15226 - txt
siRNA MSX1 Homo sapiens Homeo domain factors Helix-turn-helix domains Dental Pulp Cells Tooth Primary cell GEO GSE69992 GPL17077 - txt
siRNA HOXC4 Homo sapiens Homeo domain factors Helix-turn-helix domains Fibroblast Skin Primary cell GEO GSE44305 GPL10558 25013174 txt
siRNA LHX9 Homo sapiens Homeo domain factors Helix-turn-helix domains Fibroblast Skin Primary cell GEO GSE44305 GPL10558 25013174 txt
siRNA PRRX1 Homo sapiens Homeo domain factors Helix-turn-helix domains Fibroblast Skin Primary cell GEO GSE44305 GPL10558 25013174 txt
siRNA HOXC6 Homo sapiens Homeo domain factors Helix-turn-helix domains LNCaP Prostate Cell line GEO GSE9182 GPL96 - txt
siRNA SATB1 Homo sapiens Homeo domain factors Helix-turn-helix domains CD4+ T cells Peripheral_
blood
Primary cell GEO GSE17241 GPL6102 20522714 txt
siRNA SF1 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains OsisHESC Endometrial_
tissue
Tissue GEO GSE67524 GPL16699 27018534 txt
siRNA HOXB7 Homo sapiens Homeo domain factors Helix-turn-helix domains MIA PaCa-2 Pancreas Cell line GEO GSE46393 GPL10332 24088503 txt
siRNA HOXB7 Homo sapiens Homeo domain factors Helix-turn-helix domains Capan-1 Pancreas Cell line GEO GSE46393 GPL10332 24088503 txt
siRNA SIX4 Homo sapiens Homeo domain factors Helix-turn-helix domains PEO1 Ovary Cell line GEO GSE67327 GPL10558 - txt
siRNA ZEB2 Homo sapiens Homeo domain factors Helix-turn-helix domains MDA-MB231 Mammary_
gland
Cell line GEO GSE27966 GPL570 - txt
siRNA HOXB7 Homo sapiens Homeo domain factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA PBX1 Homo sapiens Homeo domain factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE28006 GPL10558 22125492 txt
siRNA PBX1 Homo sapiens Homeo domain factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE39418 GPL10558 23576735 txt
siRNA PBX1 Homo sapiens Homeo domain factors Helix-turn-helix domains LTED Mammary_
gland
Cell line GEO GSE36928 GPL10558 23576735 txt
siRNA HOXA1 Homo sapiens Homeo domain factors Helix-turn-helix domains IMR90 Lung_fibroblast Cell line GEO GSE37690 GPL13607 23222703 txt
siRNA NKX2-1 Homo sapiens Homeo domain factors Helix-turn-helix domains HCC4019 Lung Cell line GEO GSE28480 GPL6947 21907921 txt
siRNA RARA Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE26298 GPL570 21299862 txt
siRNA AR Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA AR Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains CWR22Rv1 Prostate Cell line GEO GSE49285 GPL10558 24847116 txt
siRNA AR Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains abl cells Prostate Cell line GEO GSE11428 GPL570 19632176 txt
siRNA ESRRG Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Trophoblast cells Placenta_
tissue
In vitro differentiated cell GEO GSE46463 GPL10558 23584901 txt
siRNA PPARG Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains GM-CSF Macrophage Peripheral_
blood
Primary cell GEO GSE88768 GPL21185 29434585 txt
siRNA NR4A1 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains PANC1 Pancreas Cell line GEO GSE46994 GPL10558 24515801 txt
siRNA NR4A3 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains 1.1B4 Pancreas Cell line GEO GSE86924 GPL13497 N txt
siRNA NR2F2 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains TOV112D Ovary Cell line GEO GSE47438 GPL6947 23690307 txt
siRNA NR2F2 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains ES2 Ovary Cell line GEO GSE47438 GPL6947 23690307 txt
siRNA ESR1 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE10061 GPL3921 18631401 txt
siRNA KLF5 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains AGS Stomach Cell line GEO GSE51706 GPL570 25053715 txt
siRNA ESR1 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE37820 GPL570 - txt
siRNA NR5A2 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE47803 GPL6947 24049078 txt
siRNA AR Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE115270 GPL15207 30557851 txt
siRNA ESR1 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA ESR1 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE95165 GPL10558 31409898 txt
siRNA ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA RARA Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE22213 GPL6947 20080953 txt
siRNA ESR2 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains BT549 Mammary_
gland
Cell line GEO GSE57379 GPL11532 - txt
siRNA HNF4a Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains HepG2 Liver Cell line GEO GSE28590 GPL570 21646355 txt
siRNA NR2F2 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Primary lymphatic endothelial cells Foreskin Primary cell GEO GSE12846 GPL570 18815287 txt
siRNA MYC Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA NCOA2 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA NCOA3 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA HIF1A Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains OEC-M1 Oral_cavity Cell line GEO GSE76581 GPL21185 - txt
siRNA MYCN Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains BE(2)C cells Neuroblastoma Cell line GEO GSE71060 GPL16686 26537256 txt
siRNA MYCN Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains BE(2)C cells Neuroblastoma Cell line GEO GSE71061 GPL16686 26537256 txt
siRNA HIF1A Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE3188 GPL570 16565084 txt
siRNA HIF1A Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE3188 GPL2507 16565084 txt
siRNA HIF1A Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA ID1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA MAX Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA NCOA1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA ASCL1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains DMS79 Lung Cell line GEO GSE21216 GPL570 21737174 txt
siRNA HIF3A Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains Hep3B Liver Cell line GEO GSE128846 GPL19109 31768607 txt
siRNA HIF3A Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains Hep3B Liver Cell line GEO GSE128847 GPL19109 31768607 txt
siRNA TFE3 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains UOK257-2 Kidney Cell line GEO GSE23614 GPL570 18206534 txt
siRNA AHR Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains THP-1 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE70200 GPL16686 26416282 txt
siRNA MXI1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR631RKH - 22955616 txt
siRNA MAX Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR675SDG - 22955616 txt
siRNA TAL1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR336ZWX - 22955616 txt
siRNA MYC Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains B-cell lymphoma cell lines Raji Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE30726 GPL96 22102868 txt
siRNA MYC Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains B-cell lymphoma cell line Blue1 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE30726 GPL96 22102868 txt
siRNA MYC Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains Adipose stem cells White_
adipose_
tissue
Stem cell GEO GSE57538 GPL13158 25437437 txt
siRNA BACH1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR793ISR - 22955616 txt
siRNA MAFG Homo sapiens Basic leucine zipper factors (bZIP) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR136ZPD - 22955616 txt
siRNA JUN Homo sapiens Basic leucine zipper factors (bZIP) Basic domains WI38 Fibroblasts Cell line GEO GSE122918 GPL17586 32514071 txt
siRNA JUN Homo sapiens Basic leucine zipper factors (bZIP) Basic domains WI38 Fibroblasts Cell line GEO GSE144397 GPL17586 32514071 txt
siRNA BACH1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains HEK293T Embryo_
kidney
Cell line GEO GSE28050 GPL570 21555518 txt
siRNA CEBPB Homo sapiens Basic leucine zipper factors (bZIP) Basic domains hESC Embryo Stem cell GEO GSE41473 GPL571 23097472 txt
siRNA ATF3 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains HCT116 Colon Cell line GEO GSE18457 GPL4133 22046379 txt
siRNA TFAP2C Homo sapiens Basic helix-span-helix factors (bHSH) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE26740 GPL6883 21572391 txt
siRNA TFAP2C Homo sapiens Basic helix-span-helix factors (bHSH) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE8640 GPL570 17875680 txt
siRNA TFAP2C Homo sapiens Basic helix-span-helix factors (bHSH) Basic domains NCI-H292 Lung Cell line GEO GSE79228 GPL16686 - txt
siRNA MYC Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains B-cell lymphoma cell line BL41 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE30726 GPL96 22102868 txt
siRNA ARNT Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains HSC3 Upper_
aerodigestive_
tract
Cell line GEO GSE80347 GPL2895 - txt
siRNA ATOH8 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains HUVEC Umbilical_
vein
Cell line GEO GSE104684 GPL570 31719172 txt
siRNA MITF Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains SK-MEL-5 Skin Cell line GEO GSE75810 GPL16043 N txt
siRNA MITF Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains NZM15 Skin Cell line GEO GSE16249 GPL570 - txt
siRNA MITF Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains NZM12 Skin Cell line GEO GSE16249 GPL570 - txt
siRNA MITF Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains MZ7 Skin Cell line GEO GSE71798 GPL10558 26530832 txt
siRNA MITF Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains Ma-Mel-15 Skin Cell line GEO GSE71881 GPL10558 26530832 txt
siRNA MITF Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains Ma-Mel-15 Skin Cell line GEO GSE71886 GPL10558 26530832 txt
siRNA TWIST2 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains Fibroblast Skin Primary cell GEO GSE44305 GPL10558 25013174 txt
siRNA MITF Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains A375 Skin Cell line GEO GSE31534 GPL570 22536322 txt
siRNA Gata1 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Bone marrow-derived mast cells Bone_marrow Primary cell GEO GSE52254 GPL13912 24615013 txt
siRNA JMJD2B Homo sapiens ARID domain factors Helix-turn-helix domains SKNBE2 Autonomic_
ganglia
Cell line GEO GSE45967 GPL13158 25925418 30388705 28684529 txt
siRNA HMGA1 Homo sapiens A.T hook factors beta-Sheet binding to DNA MDA-MB-231 Mammary_
gland
Cell line GEO GSE35525 GPL570 23945276 txt
siRNA HMGA2 Homo sapiens A.T hook factors beta-Sheet binding to DNA MDA-MB-231 Mammary_
gland
Cell line GEO GSE118857 GPL6884 N txt
siRNA Ets2 Mus musculus Tryptophan cluster factors Helix-turn-helix domains Trophoblast stem (TS) cells Embryonic Stem cell GEO GSE62168 GPL1261 25446535 txt
siRNA Stat3 Mus musculus STAT domain factors Immunoglobulin fold RAW264.7 Macrophage_
cells
Cell line GEO GSE152986 GPL17791 32730332 txt
siRNA Smad4 Mus musculus SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold bEnd3 Brain Cell line GEO GSE15736 GPL1261 21397841 txt
siRNA p63 Mus musculus p53 domain factors Immunoglobulin fold Primary keratinocytes Skin Primary cell GEO GSE10564 GPL8321 18441228 txt
siRNA Ire1 Mus musculus Others Unclassified Structure Liver Liver Tissue GEO GSE40515 GPL11180 23040070 txt
siRNA Gata4 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains TM4 Testis Cell line GEO GSE74471 GPL6887 26974005 txt
siRNA Gata3 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains CD4+ T helper (Th) cells Peripheral_
blood
Primary cell GEO GSE46185 GPL1261 23824597 txt
siRNA JARID1A Homo sapiens ARID domain factors Helix-turn-helix domains SKNBE2 Autonomic_
ganglia
Cell line GEO GSE45967 GPL13158 25925418 30388705 28684529 txt
siRNA Pparg Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Preadipocytes Adipose_
tissue
Tissue GEO GSE103474 GPL10333 N txt
siRNA Sox10 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains B16F10 Melanoma Cell line GEO GSE25501 GPL6238 22363655 txt
siRNA Sox17 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains NG4 Embryo Stem cell GEO GSE39770 GPL1261 23103054 txt
siRNA Sox2 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains NG4 Embryo Stem cell GEO GSE39771 GPL1261 23103054 txt
siRNA Foxq1 Mus musculus Fork head / winged helix factors Helix-turn-helix domains NM18 Mammary_
gland
Cell line GEO GSE23833 GPL8321 20717954 txt
siRNA Mbd1 Mus musculus CXXC zinc finger factors Zinc-coordinating DNA-binding domains 3T3-L1 cells Adipose_
tissue
Cell line GEO GSE73231 GPL1261 26590716 txt
siRNA Zbed6 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains C2C12 Muscle Cell line GEO GSE33430 GPL6885 24714595 txt
siRNA Wt1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains LB-22 Embryo_
kidney
Cell line GEO GSE66356 GPL1261 25804736 txt
siRNA Xbp1 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Liver Liver Tissue GEO GSE40515 GPL11180 23040070 txt
siRNA Twist1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains MC3T3-E1 Heart Cell line GEO GSE30953 GPL1261 22242143 txt
siRNA HIF1A Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains Primary human macrophages Blood Cell line GEO GSE56989 GPL6244 25450522 txt
siRNA MYC Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains HT29 Colon Cell line GEO GSE104175 GPL570 30018738 txt
siRNA MYC Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains HCT116 Colon Cell line GEO GSE87693 GPL20844 28847964 txt
siRNA MYC Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains DAOY M2.1 Central_
nervous_
system
Cell line GEO GSE22139 GPL570 21317922 txt
siRNA MYCN Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains NB1691 Brain Cell line GEO GSE49854 GPL13158 30388705 txt
siRNA HES6 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains LN405 Brain Cell line GEO GSE22692 GPL6947 21785461 txt
siRNA TCF4 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains CTXOE03 Brain Cell line GEO GSE62085 GPL10558 27689884 txt
siRNA TFAP4 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains BE(2)-C Brain Cell line GEO GSE74626 GPL570 27448979 txt
siRNA MYCN Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains BE(2)-C Brain Cell line GEO GSE74626 GPL570 27448979 txt
siRNA HES6 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains A172 Brain Cell line GEO GSE22692 GPL6947 21785461 txt
siRNA TWIST1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains MSCs Bone_marrow Stem cell GEO GSE76158 GPL16686 N txt
siRNA MAFK Homo sapiens Basic leucine zipper factors (bZIP) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR640PVZ - 22955616 txt
siRNA MYCN Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains SKNBE2 Autonomic_
ganglia
Cell line GEO GSE45967 GPL13158 25925418 txt
siRNA MYCN Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains SKNBE2 Autonomic_
ganglia
Cell line GEO GSE45967 GPL13158 25925418 30388705 28684529 txt
siRNA TCF4 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains SH-SY5Y Autonomic_
ganglia
Cell line GEO GSE48367 GPL13915 24058414 txt
siRNA ARID1A Homo sapiens ARID domain factors Helix-turn-helix domains SAS cells Oral_cavity Cell line GEO GSE129475 GPL16686 N txt
siRNA ARID1A Homo sapiens ARID domain factors Helix-turn-helix domains OE33 Oesophagus Cell line GEO GSE38380 GPL15207 23318448 txt
siRNA ARID1A Homo sapiens ARID domain factors Helix-turn-helix domains MDA-MB-157 Mammary_
gland
Cell line GEO GSE72669 GPL16699 28123592 txt
siRNA ARID3A Homo sapiens ARID domain factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR169DSM - 22955616 txt
siRNA JARID2 Homo sapiens ARID domain factors Helix-turn-helix domains CD34+ cells Cord_Blood Primary cell GEO GSE52921 GPL13667 25097177 txt
siRNA JARID1A Homo sapiens ARID domain factors Helix-turn-helix domains NB1691 Brain Cell line GEO GSE49854 GPL13158 30388705 txt
siRNA JMJD2B Homo sapiens ARID domain factors Helix-turn-helix domains NB1691 Brain Cell line GEO GSE49854 GPL13158 30388705 txt
siRNA CTCF Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR067CAG - 22955616 txt
siRNA BCL6 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA WT1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA BCL6 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Pfeiffer DLBCL Lymph Cell line GEO GSE45838 GPL570 27322546 txt
siRNA BCL6 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains OCI-Ly7 DLBCL Lymph Cell line GEO GSE45838 GPL570 27322546 txt
siRNA EGR4 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains SBC-5 Lung Cell line GEO GSE40558 GPL6480 - txt
siRNA SNAI1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains A549 Lung Cell line GEO GSE28558 GPL6947 20887892 txt
siRNA WT1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains PLC/PRF/5 Liver Cell line GEO GSE12886 GPL570 19190340 txt
siRNA KLF9 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HepG2 Liver Cell line GEO GSE54699 GPL10558 25330987 txt
siRNA ZNF180 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR555CYH - 22955616 txt
siRNA VEZF1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR047MQO - 22955616 txt
siRNA BCL2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA MAZ Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR129WCZ - 22955616 txt
siRNA ZNF384 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR965CCM - 22955616 txt
siRNA SP3 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains JURKAT Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE7102 GPL571 - txt
siRNA ZNF91 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains GIST-T1 Gastrointestinal_
tissue
Cell line GEO GSE40080 GPL5175 - txt
siRNA ZNF100 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains GIST-T1 Gastrointestinal_
tissue
Cell line GEO GSE40080 GPL5175 - txt
siRNA ZNF43 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains GIST-T1 Gastrointestinal_
tissue
Cell line GEO GSE40080 GPL5175 - txt
siRNA ZNF85 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains GIST-T1 Gastrointestinal_
tissue
Cell line GEO GSE40080 GPL5175 - txt
siRNA ZNF254 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains GIST-T1 Gastrointestinal_
tissue
Cell line GEO GSE40080 GPL5175 - txt
siRNA ZNF431 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains GIST-T1 Gastrointestinal_
tissue
Cell line GEO GSE40080 GPL5175 - txt
siRNA ZNF665 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains GIST-T1 Gastrointestinal_
tissue
Cell line GEO GSE40080 GPL5175 - txt
siRNA ZFX Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains C4-2B Prostate Cell line ENCODE ENCSR244ZVP - 22955616 txt
siRNA ZIC5 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains SK-MEL-28 Skin Cell line GEO GSE70223 GPL570 27671679 txt
siRNA Klf4 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Primary neonatal keratinocytes Skin Primary cell GEO GSE32685 GPL570 22364861 txt
siRNA ZNF750 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Primary neonatal keratinocytes Skin Primary cell GEO GSE32685 GPL570 22364861 txt
siRNA REST Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains NHEK Skin Cell line GEO GSE94466 GPL6244 28445475 txt
siRNA REST Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains NHEK Skin Cell line GEO GSE94467 GPL6244 28445475 txt
siRNA OSR1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Fibroblast Skin Primary cell GEO GSE44305 GPL10558 25013174 txt
siRNA SP1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains A375 Skin Cell line GEO GSE31534 GPL570 22536322 txt
siRNA ZIC5 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains A375 Skin Cell line GEO GSE70223 GPL570 27671679 txt
siRNA REST Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains LNCaP Prostate Cell line GEO GSE51461 GPL14550 - txt
siRNA CTCF Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains LNCaP Prostate Cell line GEO GSE125436 GPL16686 31911579 txt
siRNA ZNF708 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains GIST-T1 Gastrointestinal_
tissue
Cell line GEO GSE40080 GPL5175 - txt
siRNA BCL11A Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains CD34-derived erythroid progenitors Peripheral_
blood
Primary cell GEO GSE13284 GPL570 19056937 txt
siRNA ZIC2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains PANC1 Pancreas Cell line GEO GSE39704 GPL10332 26318045 txt
siRNA SP1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains OVSAYO Ovary Cell line GEO GSE55563 GPL4133 25879517 txt
siRNA EGR2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains SK-N-MC Neuroepithelium Cell line GEO GSE62090 GPL19264 26214589 txt
siRNA EGR2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains A673 Muscle Cell line GEO GSE62090 GPL19264 26214589 txt
siRNA ZNF165 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains WHIM12 Mammary_
gland
Cell line GEO GSE63984 GPL11532 N txt
siRNA ZNF165 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains SUM159 Mammary_
gland
Cell line GEO GSE63984 GPL11532 N txt
siRNA SP1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains MDA-MB-231 Mammary_
gland
Cell line GEO GSE48979 GPL6947 N txt
siRNA SNAI2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains MCFDCIS Mammary_
gland
Cell line GEO GSE72011 GPL10558 - txt
siRNA ZFX Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line ENCODE ENCSR005AHI - 22955616 txt
siRNA JUND Homo sapiens Basic leucine zipper factors (bZIP) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA JUND Homo sapiens Basic leucine zipper factors (bZIP) Basic domains PC3 Prostate Cell line GEO GSE118123 GPL570 N txt
siRNA MAFB Homo sapiens Basic leucine zipper factors (bZIP) Basic domains Monocyte-derived M-CSF macrophages Peripheral_
blood
Primary cell GEO GSE84617 GPL13497 28093525 txt
siRNA JUN Homo sapiens Basic leucine zipper factors (bZIP) Basic domains CD4+ T cells Peripheral_
blood
Primary cell GEO GSE46333 GPL14550 24401939 txt
siRNA MAF Homo sapiens Basic leucine zipper factors (bZIP) Basic domains CD4+ T cells Peripheral_
blood
Primary cell GEO GSE46333 GPL14550 24401939 txt
siRNA FOS Homo sapiens Basic leucine zipper factors (bZIP) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE36586 GPL14550 22791811 txt
siRNA CEBPA Homo sapiens Basic leucine zipper factors (bZIP) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CEBPB Homo sapiens Basic leucine zipper factors (bZIP) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CEBPD Homo sapiens Basic leucine zipper factors (bZIP) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA FOS Homo sapiens Basic leucine zipper factors (bZIP) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA JUN Homo sapiens Basic leucine zipper factors (bZIP) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA ATF4 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains A375 Skin Cell line GEO GSE136614 GPL570 32283529 txt
siRNA FOSL1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains BT549 Mammary_
gland
Cell line GEO GSE46440 GPL11532 24830720 txt
siRNA JUN Homo sapiens Basic leucine zipper factors (bZIP) Basic domains BT549 Mammary_
gland
Cell line GEO GSE46440 GPL11532 24830720 txt
siRNA JUN Homo sapiens Basic leucine zipper factors (bZIP) Basic domains BT549 Mammary_
gland
Cell line GEO GSE71977 GPL11532 26792858 txt
siRNA MAF Homo sapiens Basic leucine zipper factors (bZIP) Basic domains Lymphatic endothelial cells Lymph Primary cell GEO GSE16356 GPL570 20080955 txt
siRNA NFE2L2 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains A549 Lung Cell line GEO GSE28230 GPL4133 22789539 txt
siRNA NFE2L2 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains A549 Lung Cell line GEO GSE94393 GPL15207 29050246 txt
siRNA BATF3 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains L428 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE89760 GPL16043 28878352 txt
siRNA ATF2 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE50165 GPL6884 - txt
siRNA NFE2L2 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR100ODO - 22955616 txt
siRNA ATF3 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR045TQN - 22955616 txt
siRNA ZNF263 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HelaS3 Cervix Cell line GEO GSE19146 GPL6884 19887448 txt
siRNA ZNF554 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HTR8/Svneo Embryonic Cell line GEO GSE65940 GPL10558 30135684 txt
siRNA ZNF554 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains BeWo cells Embryonic Cell line GEO GSE65866 GPL10558 30135684 txt
siRNA KLF4 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HCE Embryo Stem cell GEO GSE94468 GPL6244 - txt
siRNA KLF7 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HCE Embryo Stem cell GEO GSE94469 GPL6244 - txt
siRNA KLF4 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HCE Embryo Stem cell GEO GSE94470 GPL16686 - txt
siRNA KLF7 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HCE Embryo Stem cell GEO GSE94470 GPL16686 - txt
siRNA OVOL2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Corneal epithelial cells Corneal_
epithelial
Primary cell GEO GSE79251 GPL14550 - txt
siRNA KLF5 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains SW480 Colon Cell line GEO GSE33824 GPL4133 23319804 txt
siRNA ZNF746 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HCT116 Colon Cell line GEO GSE90832 GPL13497 N txt
siRNA MTF1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Caco-2 Colon Cell line GEO GSE76510 GPL10558 26824222 txt
siRNA ERG Homo sapiens Tryptophan cluster factors Helix-turn-helix domains HUVEC Umbilical_
vein
Cell line GEO GSE14801 GPL570 19359602 txt
siRNA SP1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HeLa Cervix Cell line GEO GSE37935 GPL570 23018034 txt
siRNA BCL6 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains U87 Central_
nervous_
system
Cell line GEO GSE77053 GPL10558 28356518 txt
siRNA GLI2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains U2OS Bone_marrow Cell line GEO GSE42903 GPL6244 - txt
siRNA HINFP Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains U2OS Bone_marrow Cell line GEO GSE69148 GPL20234 27929715 txt
siRNA HINFP Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains hTERT-RPE1 Bone_marrow Cell line GEO GSE69148 GPL20234 27929715 txt
siRNA REST Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains H295R/TR Adrenal_
gland
Cell line GEO GSE43033 GPL6244 23907384 txt
siRNA REST Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains H295R/TR Adrenal_
gland
Cell line GEO GSE43033 GPL6244 23907384 txt
siRNA JUN Homo sapiens Basic leucine zipper factors (bZIP) Basic domains Ma-Mel-15 Skin Cell line GEO GSE71886 GPL10558 26530832 txt
siRNA CEBPD Homo sapiens Basic leucine zipper factors (bZIP) Basic domains A375 Skin Cell line GEO GSE31534 GPL570 22536322 txt
siRNA STAT6 Homo sapiens STAT domain factors Immunoglobulin fold CD4+ T cells Peripheral_
blood
Primary cell GEO GSE17851 GPL6102 20620947 txt
siRNA ZMIZ1 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR509YMP - 22955616 txt
siRNA TBL1XR1 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR989NEA - 22955616 txt
siRNA LMNA Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR071JWS - 22955616 txt
siRNA STAT3 Homo sapiens STAT domain factors Immunoglobulin fold A375 Skin Cell line GEO GSE31534 GPL570 22536322 txt
siRNA STAT6 Homo sapiens STAT domain factors Immunoglobulin fold A375 Skin Cell line GEO GSE31534 GPL570 22536322 txt
siRNA STAT3 Homo sapiens STAT domain factors Immunoglobulin fold LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA STAT3 Homo sapiens STAT domain factors Immunoglobulin fold DU145 Prostate Cell line GEO GSE25867 GPL571 23288901 txt
siRNA STAT3 Homo sapiens STAT domain factors Immunoglobulin fold DU145 Prostate Cell line GEO GSE17482 GPL570 N txt
siRNA STAT3 Homo sapiens STAT domain factors Immunoglobulin fold CWR22Rv1 Prostate Cell line GEO GSE17482 GPL570 N txt
siRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold HaCaT RG Immortalized_
keratinocyte
Cell line GEO GSE4975 GPL97 16885358 txt
siRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold HaCaT RG Immortalized_
keratinocyte
Cell line GEO GSE4975 GPL96 16885358 txt
siRNA TP53 Homo sapiens p53 domain factors Immunoglobulin fold SAECs Lung Cell line GEO GSE47436 GPL570 24726368 txt
siRNA KAT2B Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR576FFB - 22955616 txt
siRNA STAT3 Homo sapiens STAT domain factors Immunoglobulin fold CD4+ T cells Peripheral_
blood
Primary cell GEO GSE46333 GPL14550 24401939 txt
siRNA STAT3 Homo sapiens STAT domain factors Immunoglobulin fold SKOV3 Ovary Cell line GEO GSE20597 GPL6947 N txt
siRNA STAT3 Homo sapiens STAT domain factors Immunoglobulin fold OE33 Oesophagus Cell line GEO GSE47763 GPL10558 23912451 txt
siRNA STAT3 Homo sapiens STAT domain factors Immunoglobulin fold OE21 Oesophagus Cell line GEO GSE47763 GPL10558 23912451 txt
siRNA TP53 Homo sapiens p53 domain factors Immunoglobulin fold MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA STAT1 Homo sapiens STAT domain factors Immunoglobulin fold MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA STAT5B Homo sapiens STAT domain factors Immunoglobulin fold MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA STAT6 Homo sapiens STAT domain factors Immunoglobulin fold NCI-H460 Lung Cell line GEO GSE25942 GPL6884 22162773 txt
siRNA STAT3 Homo sapiens STAT domain factors Immunoglobulin fold LX-2 Liver Cell line GEO GSE92638 GPL19251 28154170 txt
siRNA TP53 Homo sapiens p53 domain factors Immunoglobulin fold SKBR3 Mammary_
gland
Cell line GEO GSE19670 GPL570 20227041 txt
siRNA STAT5A Homo sapiens STAT domain factors Immunoglobulin fold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR174FUO - 22955616 txt
siRNA NMI Homo sapiens Others Other Cofactors MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold SCC-1 Head_and_
neck
Cell line GEO GSE4975 GPL97 16885358 txt
siRNA IRF7 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains Primary human bronchial epithelial cells Bronchus Primary cell GEO GSE70190 GPL20609 26810609 txt
siRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold SCC-1 Head_and_
neck
Cell line GEO GSE4975 GPL96 16885358 txt
siRNA CEBPZ Homo sapiens Others TcoF-DB_
TF
A375 Skin Cell line GEO GSE31534 GPL570 22536322 txt
siRNA SMARCA4 Homo sapiens Others TcoF-DB_
TF
LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold SCC-6 Head_and_
neck
Cell line GEO GSE4975 GPL570 16885358 txt
siRNA TET2 Homo sapiens Others TcoF-DB_
TF
LNCaP Prostate Cell line GEO GSE66038 GPL6244 N txt
siRNA TBX3 Homo sapiens T-Box factors Immunoglobulin fold Fibroblast Skin Primary cell GEO GSE44305 GPL10558 25013174 txt
siRNA TET2 Homo sapiens Others TcoF-DB_
TF
DU145 Prostate Cell line GEO GSE66038 GPL6244 N txt
siRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold HaCaT Immortalized_
keratinocyte
Cell line GEO GSE4975 GPL570 16885358 txt
siRNA STAT3 Homo sapiens STAT domain factors Immunoglobulin fold Scaber Urothelial Cell line GEO GSE48124 GPL10558 24525232 txt
siRNA BRCA1 Homo sapiens Others TcoF-DB_
TF
MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold Primary neonatal keratinocytes Skin Primary cell GEO GSE33495 GPL570 22922031 txt
siRNA ERBB2 Homo sapiens Others Other Cofactors MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CHEK1 Homo sapiens Others Other Cofactors MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA BRCA2 Homo sapiens Others Other Cofactors MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA ABL1 Homo sapiens Others Other Cofactors MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA PARK7 Homo sapiens Others Other Cofactors LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA STAT6 Homo sapiens STAT domain factors Immunoglobulin fold HUVEC Umbilical_
vein
Cell line GEO GSE28117 GPL570 21464207 txt
siRNA HTATIP2 Homo sapiens Others Other Cofactors LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA FHL2 Homo sapiens Others Other Cofactors LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA GTF2B Homo sapiens Others TcoF-DB_
TcoF
HeLa Cervix Cell line GEO GSE48847 GPL4133 - txt
siRNA STAT1 Homo sapiens STAT domain factors Immunoglobulin fold A375 Skin Cell line GEO GSE31534 GPL570 22536322 txt
siRNA RAD21 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR051NHG - 22955616 txt
siRNA NFKB1 Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA RELA Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold WI38 Fibroblasts Cell line GEO GSE122918 GPL17586 32514071 txt
siRNA CCNA2 Homo sapiens Others TcoF-DB_
TcoF
MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA AKT1 Homo sapiens Others TcoF-DB_
TcoF
MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA NFKB2 Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold L-1236 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE64234 GPL6244 26988706 txt
siRNA BRD4 Homo sapiens Others TcoF-DB_
TcoF
Ovcar8 Ovary Cell line GEO GSE78704 GPL570 - txt
siRNA RUNX1 Homo sapiens Runt domain factors Immunoglobulin fold HTB58 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE16238 GPL570 - txt
siRNA RELB Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold HaCaT Immortalized_
keratinocyte
Cell line GEO GSE97783 GPL10558 30037996 txt
siRNA MBD3 Homo sapiens Others TcoF-DB_
TF
HeLa Cervix Cell line GEO GSE41003 GPL6244 23361464 txt
siRNA MBD2 Homo sapiens Others TcoF-DB_
TF
HeLa Cervix Cell line GEO GSE41003 GPL6244 23361464 txt
siRNA RUNX1 Homo sapiens Runt domain factors Immunoglobulin fold ALLSIL Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE62140 GPL19197 26108691 txt
siRNA RELB Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold A549 Lung Cell line GEO GSE73158 GPL10558 - txt
siRNA RELA Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA RUNX1 Homo sapiens Runt domain factors Immunoglobulin fold Kasumi-1 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE45743 GPL6244 24055056 txt
siRNA EBF1 Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold Fully differentiated adipocytes White_
adipose_
tissue
Tissue GEO GSE42680 GPL11532 24856929 txt
siRNA TET3 Homo sapiens Others TcoF-DB_
TF
NCCIT Embryo Cell line GEO GSE51901 GPL6244 24958354 txt
siRNA NFAT5 Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold HUVEC Umbilical_
vein
Cell line GEO GSE22956 GPL6947 21717420 txt
siRNA TET2 Homo sapiens Others TcoF-DB_
TF
NCCIT Embryo Cell line GEO GSE51901 GPL6244 24958354 txt
siRNA NFAT5 Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold Primary fibroblast-like synoviocytes synovial Primary cell GEO GSE22956 GPL6883 21717420 txt
siRNA RELA Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold A375 Skin Cell line GEO GSE31534 GPL570 22536322 txt
siRNA NFKB1 Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold CD4+ T cells Peripheral_
blood
Primary cell GEO GSE46333 GPL14550 24401939 txt
siRNA BRCA1 Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR205BWT - 22955616 txt
siRNA BHLHE40 Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR626SFM - 22955616 txt
siRNA CEBPZ Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR977SOT - 22955616 txt
siRNA RELB Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold MiaPaCa2 Pancreas Cell line GEO GSE35463 GPL6244 22565310 txt
siRNA SP100 Homo sapiens SAND domain factors alpha-Helices exposed by beta-structures A375 Skin Cell line GEO GSE31534 GPL570 22536322 txt
siRNA PAX3 Homo sapiens Paired box factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA SMAD2 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold BxPC-3 Pancreas Cell line GEO GSE8464 GPL4525 - txt
siRNA SMAD3 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold BxPC-3 Pancreas Cell line GEO GSE8464 GPL4525 - txt
siRNA SMAD7 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA SMAD2 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold Hep3B Liver Cell line GEO GSE6242 GPL4525 - txt
siRNA SMAD3 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold Hep3B Liver Cell line GEO GSE6242 GPL4525 - txt
siRNA SMAD4 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold Hep3B Liver Cell line GEO GSE6242 GPL4525 - txt
siRNA PAX3 Homo sapiens Paired box factors Helix-turn-helix domains NZM12 Skin Cell line GEO GSE16249 GPL570 - txt
siRNA PCNA Homo sapiens Others TcoF-DB_
TcoF
MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA MAPK14 Homo sapiens Others TcoF-DB_
TcoF
MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA KDM3A Homo sapiens Others TcoF-DB_
TcoF
MCF7 Mammary_
gland
Cell line GEO GSE124270 GPL10558 31390833 txt
siRNA PAX3 Homo sapiens Paired box factors Helix-turn-helix domains NZM15 Skin Cell line GEO GSE16249 GPL570 - txt
siRNA BAG1 Homo sapiens Others Unclassified Structure LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA SP100 Homo sapiens SAND domain factors alpha-Helices exposed by beta-structures MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA RUNX2 Homo sapiens Runt domain factors Immunoglobulin fold MCF7VP Mammary_
gland
Cell line GEO GSE28414 GPL570 - txt
siRNA RUNX1 Homo sapiens Runt domain factors Immunoglobulin fold TF-1 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE16238 GPL570 - txt
siRNA RUNX1 Homo sapiens Runt domain factors Immunoglobulin fold SKNO-1 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE34594 GPL10558 22343733 txt
siRNA NFKB1 Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold U251 Central_
nervous_
system
Cell line GEO GSE75003 GPL570 27426982 txt
siRNA HDAC5 Homo sapiens Others TcoF-DB_
TcoF
MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA RELA Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold HEK293 Embryo_
kidney
Cell line GEO GSE1676 GPL201 15892871 txt
siRNA HDAC3 Homo sapiens Others TcoF-DB_
TcoF
MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CENPF Homo sapiens Others TcoF-DB_
TcoF
MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CDK2 Homo sapiens Others TcoF-DB_
TcoF
MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA RELA Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold WI38 Fibroblasts Cell line GEO GSE144397 GPL17586 32514071 txt
siRNA SPDEF Homo sapiens Tryptophan cluster factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE48928 GPL10558 24043118 txt
siRNA CDC2 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CDC20 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA PIAS Homo sapiens Others Zinc-coordinating DNA-binding domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CDC25A Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CDC25B Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA ELK1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains MDA-MB231 Mammary_
gland
Cell line GEO GSE18849 GPL4133 20005852 txt
siRNA ETS1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains A375 Skin Cell line GEO GSE31534 GPL570 22536322 txt
siRNA CDC34 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CDK4 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA ZNF24 Homo sapiens Others Zinc-coordinating DNA-binding domains HEK293 Embryo_
kidney
Cell line GEO GSE14273 GPL6480 - txt
siRNA CDC16 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA IRF4 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains Cutaneous T cell lymphoma HuT-102 cells Skin Primary cell GEO GSE22036 GPL570 21498517 txt
siRNA ERF Homo sapiens Tryptophan cluster factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CDKN2A Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA MYBL2 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA NCOR2 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA TEL2 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CENPE Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA MAPK1 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA MCM2 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA ELF5 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains HCC1937 Mammary_
gland
Cell line GEO GSE30405 GPL6244 23300383 txt
siRNA TP53 Homo sapiens p53 domain factors Immunoglobulin fold HEK293 Embryo_
kidney
Cell line GEO GSE1676 GPL201 15892871 txt
siRNA ARHGEF1 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA ATR Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CCL5 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CCNB1 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA MYB Homo sapiens Tryptophan cluster factors Helix-turn-helix domains PC-3M Prostate Cell line GEO GSE49286 GPL10558 24847116 txt
siRNA TP53 Homo sapiens p53 domain factors Immunoglobulin fold U251 Central_
nervous_
system
Cell line GEO GSE13991 GPL1426 19139068 txt
siRNA CCND3 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA CCNG2 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA MYB Homo sapiens Tryptophan cluster factors Helix-turn-helix domains VCaP Prostate Cell line GEO GSE49286 GPL10558 24847116 txt
siRNA MYB Homo sapiens Tryptophan cluster factors Helix-turn-helix domains LNCaP Prostate Cell line GEO GSE49286 GPL10558 24847116 txt
siRNA SKP2 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA ZEH2 Homo sapiens Others Unclassified Structure MDA-MB-231 Mammary_
gland
Cell line GEO GSE48979 GPL6947 N txt
siRNA ERG Homo sapiens Tryptophan cluster factors Helix-turn-helix domains VCaP Prostate Cell line GEO GSE53994 GPL10558 24591637 txt
siRNA NCOR1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains LNCaP Prostate Cell line GEO GSE60722 GPL570 N txt
siRNA SMARCC1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA MYB Homo sapiens Tryptophan cluster factors Helix-turn-helix domains DU145 Prostate Cell line GEO GSE49286 GPL10558 24847116 txt
siRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold Neonatal foreskin keratinocytes Foreskin Primary cell GEO GSE56640 GPL18627 24823795 txt
siRNA TP53 Homo sapiens p53 domain factors Immunoglobulin fold Neonatal foreskin keratinocytes Foreskin Primary cell GEO GSE56640 GPL18627 24823795 txt
siRNA ELK1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains CD4+ T cells Peripheral_
blood
Primary cell GEO GSE46333 GPL14550 24401939 txt
siRNA MTA2 Homo sapiens Others Zinc-coordinating DNA-binding domains SGC-7901 Stomach Cell line GEO GSE65915 GPL18943 N txt
siRNA EHF Homo sapiens Tryptophan cluster factors Helix-turn-helix domains Corneal epithelial cells Corneal_
epithelial
Primary cell GEO GSE43157 GPL6244 24142692 txt
siRNA POLR2A Homo sapiens Others General Cofactors MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA ETS2 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains H441 Lung Cell line GEO GSE43459 GPL6244 23659968 txt
siRNA E2F5 Homo sapiens Others Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA FLCN Homo sapiens Others Unclassified Structure UOK257-2 Kidney Cell line GEO GSE23614 GPL570 18206534 txt
siRNA ETS1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains WI38 Fibroblasts Cell line GEO GSE144397 GPL17586 32514071 txt
siRNA CASP8AP2 Homo sapiens Others Other Cofactors hTERT-RPE1 Bone_marrow Cell line GEO GSE69148 GPL20234 27929715 txt
siRNA CASP8AP2 Homo sapiens Others Other Cofactors U2OS Bone_marrow Cell line GEO GSE69148 GPL20234 27929715 txt
siRNA ETV5 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains hADSC Soft_tissue Stem cell GEO GSE75692 GPL10558 27732649 txt
siRNA MEP50 Homo sapiens Others Unclassified Structure LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold SCC-012 Head_and_
neck
Cell line GEO GSE4975 GPL570 16885358 txt
siRNA AOF2 Homo sapiens Others Unclassified Structure LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA MYB Homo sapiens Tryptophan cluster factors Helix-turn-helix domains Primary CD14-myeloblasts Cord_blood Primary cell GEO GSE21943 GPL96 20686118 txt
siRNA LMNB2 Homo sapiens Others Unclassified Structure K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR669QED - 22955616 txt
siRNA MYB Homo sapiens Tryptophan cluster factors Helix-turn-helix domains CD34+ progenitor cells Cord_Blood Primary cell GEO GSE13110 GPL96 20686118 txt
siRNA CAV1 Homo sapiens Others Unclassified Structure LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA CDAN1 Homo sapiens Others Unclassified Structure K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR472UFW - 22955616 txt
siRNA TCP1 Homo sapiens Others Unclassified Structure K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR301SWM - 22955616 txt
siRNA MYB Homo sapiens Tryptophan cluster factors Helix-turn-helix domains CD34+ cells Cord_Blood Primary cell GEO GSE60299 GPL13667 N txt
siRNA ERG Homo sapiens Tryptophan cluster factors Helix-turn-helix domains HeLa Cervix Cell line GEO GSE80395 GPL10558 27273514 txt
siRNA ETV6 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains U251 Central_
nervous_
system
Cell line GEO GSE75003 GPL570 27426982 txt
siRNA LMNB1 Homo sapiens Others Unclassified Structure K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR656ZOI - 22955616 txt
siRNA EP300 Homo sapiens Others ENCODE_
TF
LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA RCHY1 Homo sapiens Others Unclassified Structure LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA PRKCL1 Homo sapiens Others Unclassified Structure LNCaP Prostate Cell line GEO GSE66722 GPL19874 N txt
siRNA ZNF658 Homo sapiens Others Zinc-coordinating DNA-binding domains Caco-2 Colon Cell line GEO GSE59385 GPL10558 25582195 txt
siRNA GABPA Homo sapiens Tryptophan cluster factors Helix-turn-helix domains A549 Lung Cell line GEO GSE38332 GPL570 23921124 txt
siRNA SLC2A3 Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA FLI1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains THP-1 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE144625 GPL26944 32508810 txt
siRNA SPIB Homo sapiens Tryptophan cluster factors Helix-turn-helix domains OCI-Ly3 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE50015 GPL10558 24875472 txt
siRNA ETV6 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains LOUCY Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE33820 GPL10558 22162831 txt
siRNA RCOR1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR390GWL - 22955616 txt
siRNA ETS1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains ALLSIL Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE62135 GPL19197 26108691 txt
siRNA TOP2A Homo sapiens Others Unclassified Structure MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
siRNA GFP Homo sapiens Others Unclassified Structure BT-20 cells Mammary_
gland
Cell line GEO GSE2222 GPL96 15958562 txt
siRNA ZNF25 Homo sapiens Others Zinc-coordinating DNA-binding domains hMSC-TERT4 Bone_marrow Cell line GEO GSE83901 GPL16686 27814695 txt
siRNA POLR3A Homo sapiens Others ENCODE_
TF
MCF7 Mammary_
gland
Cell line GEO GSE42239 GPL570 26067234 txt
siRNA ETS1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains WI38 Fibroblasts Cell line GEO GSE122918 GPL17586 32514071 txt
siRNA GFP Homo sapiens Others Unclassified Structure SCC25 Upper_
aerodigestive_
tract
Cell line GEO GSE58074 GPL10558 26018753 25411162 txt
siRNA EP300 Homo sapiens Others ENCODE_
TF
KYSE150 Oesophagus Cell line GEO GSE74742 GPL17586 - txt
siRNA TCEA1 Homo sapiens Others General Cofactors MCF7 Mammary_
gland
Cell line GEO GSE31912 GPL570 22536322 txt
shRNA MYT1L Homo sapiens C2HC zinc finger factors Zinc-coordinating DNA-binding domains SPC04 Fetal_
spinal_
cord
Cell line GEO GSE65857 GPL10558 28470180 txt
shRNA RELB Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold SKOV3 Ovary Cell line GEO GSE62815 GPL6244 N txt
shRNA ZNF622 Homo sapiens Others Zinc-coordinating DNA-binding domains HepG2 Liver Cell line ENCODE ENCSR518JXY - - txt
shRNA SNAI2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Primary human keratinocytes Skin Primary cell GEO GSE55269 GPL570 25793155 txt
shRNA CREB1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE12056 GPL570 18801183 txt
shRNA SALL4 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains SNU398 Liver Cell line GEO GSE35965 GPL6244 - txt
shRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold HaCaT Immortalized_
keratinocyte
Cell line GEO GSE88861 GPL6244 28041841 txt
shRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold HaCaT Immortalized_
keratinocyte
Cell line GEO GSE88832 GPL6244 28041841 txt
shRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold JHU-029 Head_and_
neck
Cell line GEO GSE88833 GPL6244 28041841 txt
shRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold JHU-029 Head_and_
neck
Cell line GEO GSE88861 GPL6244 28041841 txt
shRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold FaDU Head_and_
neck
Cell line GEO GSE88833 GPL6244 28041841 txt
shRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold FaDU Head_and_
neck
Cell line GEO GSE88861 GPL6244 28041841 txt
shRNA ZNF148 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains CD34-derived erythroid progenitors Peripheral_
blood
Primary cell GEO GSE31092 GPL571 21828133 txt
shRNA TP53 Homo sapiens p53 domain factors Immunoglobulin fold JVM2 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE70479 GPL10558 - txt
shRNA HIC1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HBL100 Mammary_
gland
Cell line GEO GSE50061 GPL17077 24295734 txt
shRNA SALL4 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains H661 Lung Cell line GEO GSE68959 GPL6244 27705911 txt
shRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold MCF10A Mammary_
gland
Cell line GEO GSE20286 GPL571 16715076/20194747 txt
shRNA TP63 Homo sapiens p53 domain factors Immunoglobulin fold UC14 Bladder Cell line GEO GSE48124 GPL10558 24525232 txt
shRNA ZFX Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains NOMO-1 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE43021 GPL6244 - txt
shRNA KLF3 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE54437 GPL10558 - txt
shRNA TP53 Homo sapiens p53 domain factors Immunoglobulin fold BJ Skin Cell line GEO GSE20076 GPL6884 20228809 txt
shRNA PAX2 Homo sapiens Paired box factors Helix-turn-helix domains TOV21G Ovary Cell line GEO GSE30501 GPL570 23502471 txt
shRNA CTCF Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Immortalized prostate epithelial cells Prostate Cell line GEO GSE93363 GPL17586 N txt
shRNA IKZF2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains JURKAT Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE41796 GPL10332 23600753 txt
shRNA IKZF1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains JURKAT Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE41796 GPL10332 23600753 txt
shRNA PAX3 Homo sapiens Paired box factors Helix-turn-helix domains Rh30 Soft_tissue Cell line GEO GSE35862 GPL6480 22533991 txt
shRNA EGR3 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains M12 Prostate Cell line GEO GSE52108 GPL570 23342084 txt
shRNA TP53 Homo sapiens p53 domain factors Immunoglobulin fold iPS cells Dermal_
fibroblasts
Induced pluripotent stem cell GEO GSE13334 GPL4133 19668191 txt
shRNA TP53 Homo sapiens p53 domain factors Immunoglobulin fold Mesenchymal stem cells Bone_marrow In vitro differentiated cell GEO GSE28546 GPL6883 - txt
shRNA SPDEF Homo sapiens Tryptophan cluster factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE40985 GPL570 23764000 txt
shRNA GABPA Homo sapiens Tryptophan cluster factors Helix-turn-helix domains LNCaP Prostate Cell line GEO GSE49083 GPL10558 24753418 txt
shRNA Tet2 Mus musculus Others TcoF-DB_
TF
ES cells Embryo Cell line GEO GSE41721 GPL11180 23222540 txt
shRNA Tet2 Mus musculus Others TcoF-DB_
TF
HAFTL Macrophage_
cells
Cell line GEO GSE39666 GPL10333 22981865 txt
shRNA Nfix Mus musculus SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold LSK Muscle Cell line GEO GSE45492 GPL11180 24041575 txt
shRNA GABPA Homo sapiens Tryptophan cluster factors Helix-turn-helix domains C4-2B Prostate Cell line GEO GSE49083 GPL10558 24753418 txt
shRNA Myb Mus musculus Tryptophan cluster factors Helix-turn-helix domains AML cells Hematopoietic Cell line GEO GSE30745 GPL1261 21828272 txt
shRNA Myb Mus musculus Tryptophan cluster factors Helix-turn-helix domains Tracheal epithelial cell Lung Primary cell GEO GSE60365 GPL17543 25103188 txt
shRNA HMGA1 Homo sapiens A.T hook factors beta-Sheet binding to DNA MDA-MB231 Mammary_
gland
Cell line GEO GSE45483 GPL5175 23658826 txt
shRNA MYB Homo sapiens Tryptophan cluster factors Helix-turn-helix domains CD34-derived erythroid progenitors Peripheral_
blood
Primary cell GEO GSE25678 GPL8019 21205891 txt
shRNA FLI1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains SK-N-MC Neuroepithelium Cell line GEO GSE14543 GPL96 19404404 txt
shRNA ELK3 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains MDA-MB231 Mammary_
gland
Cell line GEO GSE83325 GPL15207 - txt
shRNA SPDEF Homo sapiens Tryptophan cluster factors Helix-turn-helix domains MCF7 Mammary_
gland
Cell line GEO GSE37662 GPL96 23592399 txt
shRNA ETV1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains LNCaP Prostate Cell line GEO GSE47750 GPL10558 26731476 txt
shRNA ARID1B Homo sapiens ARID domain factors Helix-turn-helix domains IRM90 Liver Cell line GEO GSE75207 GPL6244 27737960 txt
shRNA ARID1A Homo sapiens ARID domain factors Helix-turn-helix domains IOSE80pc Ovary Cell line GEO GSE37684 GPL10558 21900401 txt
shRNA ARID1A Homo sapiens ARID domain factors Helix-turn-helix domains OSE4 Ovary Cell line GEO GSE37684 GPL10558 21900401 txt
shRNA ARID1A Homo sapiens ARID domain factors Helix-turn-helix domains iEEC16 Uterus Cell line GEO GSE86572 GPL10558 - txt
shRNA IRF4 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains BL2 Lymph Cell line GEO GSE64269 GPL18405 - txt
shRNA TAL1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains HSPCs Bone_marrow Primary cell GEO GSE62634 GPL6244 - txt
shRNA ETV1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains GIST882 Gastrointestinal_
tissue
Cell line GEO GSE19396 GPL6947 20927104 txt
shRNA ETV1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains GIST48 Gastrointestinal_
tissue
Cell line GEO GSE19396 GPL6947 20927104 txt
shRNA ARNT Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains hESC HSF1 Embryo Stem cell GEO GSE61842 GPL570 25418722 txt
shRNA ARNT Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains WA09/H9 Embryo Stem cell GEO GSE76090 GPL10558 - txt
shRNA MLXIP Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains HA1ER Embryo_
kidney
Stem cell GEO GSE11242 GPL4133 18458340 txt
shRNA Prdm2 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains C2C12 Muscle Cell line GEO GSE58676 GPL1261 26040698 26697392 txt
shRNA Atoh8 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains mPAC L20 Pancreas Cell line GEO GSE43537 GPL1261 N txt
shRNA Tsc22d4 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Abdominal fat Adipose_
tissue
Tissue GEO GSE53754 GPL17791 N txt
shRNA Tsc22d4 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Abdominal fat Adipose_
tissue
Tissue GEO GSE53753 GPL17791 N txt
shRNA Cebpa Mus musculus Basic leucine zipper factors (bZIP) Basic domains Marrow progenitors Bone_marrow Primary cell GEO GSE55760 GPL6887 24752325 txt
shRNA Tsc22d4 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Liver Liver Tissue GEO GSE33324 GPL9746 23307490 txt
shRNA Cebpb Mus musculus Basic leucine zipper factors (bZIP) Basic domains 4T1 mammary tumor cells Mammary_
gland
Primary cell GEO GSE40825 GPL15887 N txt
shRNA Junb Mus musculus Basic leucine zipper factors (bZIP) Basic domains Tibialis anterior muscle Tibialis_
anterior_
muscle
Tissue GEO GSE18664 GPL4134 20921137 txt
shRNA Rest Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains NSP Brain Cell line GEO GSE38538 GPL1261 22791895 txt
shRNA Sall4 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Stem cell GEO GSE14219 GPL1261 19350679 txt
shRNA Rest Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Stem cell GEO GSE28141 GPL6885 21632747 txt
shRNA Klf6 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HCC Liver Cell line GEO GSE54762 GPL1261 26876204 txt
shRNA Klf17 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains 168FARN Mammary_
gland
Cell line GEO GSE17081 GPL6238 19801974 txt
shRNA IRF2 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains Primary CD34+ hematopoietic stem/progenitor cells (HSPCs) Fetal_
liver
Primary cell GEO GSE36988 GPL15394 23041383 txt
shRNA ERG Homo sapiens Tryptophan cluster factors Helix-turn-helix domains VCaP Prostate Cell line GEO GSE16671 GPL6883 20713528 txt
shRNA Foxk1 Mus musculus Fork head / winged helix factors Helix-turn-helix domains MEFs Embryonic Primary cell GEO GSE112701 GPL1261 N txt
shRNA Sox2 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains ES cells Embryo Cell line GEO GSE34170 GPL6885 23169531 txt
shRNA Tcf7 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains EML Hematopoietic Cell line GEO GSE30068 GPL6887 22412390 txt
shRNA ETV4 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains PC3 Prostate Cell line GEO GSE21209 GPL4133 21373373 txt
shRNA Mef2d Mus musculus MADS box factors alpha-Helices exposed by beta-structures C2C12 Muscle Cell line GEO GSE63798 GPL19485 25416778 txt
shRNA Mef2c Mus musculus MADS box factors alpha-Helices exposed by beta-structures C2C12 Muscle Cell line GEO GSE63798 GPL19485 25416778 txt
shRNA Mef2b Mus musculus MADS box factors alpha-Helices exposed by beta-structures C2C12 Muscle Cell line GEO GSE63798 GPL19485 25416778 txt
shRNA Mef2a Mus musculus MADS box factors alpha-Helices exposed by beta-structures C2C12 Muscle Cell line GEO GSE63798 GPL19485 25416778 txt
shRNA ETV1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains LNCaP Prostate Cell line GEO GSE46329 GPL6947 23817021 txt
shRNA Esrrb Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE34170 GPL6885 23169531 txt
shRNA CREB1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains H3118 MEC Parotid_
gland
Cell line GEO GSE49673 GPL570 26503699 txt
shRNA TWIST1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains CAF32 Stomach Tissue GEO GSE62738 GPL13607 25368021 txt
shRNA TAL1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains ECFCs Umbilical_
cord_
blood
Primary cell GEO GSE44444 GPL6244 24792117 txt
shRNA TFAP2C Homo sapiens Basic helix-span-helix factors (bHSH) Basic domains MCF7 Mammary_
gland
Cell line GEO GSE44203 GPL14951 - txt
shRNA STAT5 Homo sapiens STAT domain factors Immunoglobulin fold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE61312 GPL6244 - txt
shRNA CREB1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains JURKAT Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE68413 GPL10558 26008971 txt
shRNA TAF15 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR998RZI - 22955616 txt
shRNA STAT1 Homo sapiens STAT domain factors Immunoglobulin fold JURKAT Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE44652 GPL570 23471820 txt
shRNA CREB1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains Molt4 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE68413 GPL10558 26008971 txt
shRNA CREB1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains Nalm6 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE68413 GPL10558 26008971 txt
shRNA CREB1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains RS4;11 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE68413 GPL10558 26008971 txt
shRNA XBP1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains MDA-MB231 Mammary_
gland
Cell line GEO GSE49953 GPL570 24670641 txt
shRNA XBP1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains T47D Mammary_
gland
Cell line GEO GSE49953 GPL570 24670641 txt
shRNA TWIST1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains CAF14 Stomach Tissue GEO GSE62738 GPL13607 25368021 txt
shRNA CREB1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains HSY Parotid_
gland
Cell line GEO GSE49673 GPL570 26503699 txt
shRNA RUNX2 Homo sapiens Runt domain factors Immunoglobulin fold SKOV3 Ovary Cell line GEO GSE46477 GPL4133 24124450 txt
shRNA JUN Homo sapiens Basic leucine zipper factors (bZIP) Basic domains LP6 Soft_tissue Cell line GEO GSE57529 GPL5175 24852265 txt
shRNA RUNX1 Homo sapiens Runt domain factors Immunoglobulin fold MV4-11 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE94835 GPL17692 - txt
shRNA RUNX1 Homo sapiens Runt domain factors Immunoglobulin fold MV4-11 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE98748 GPL17692 - txt
shRNA KLF2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains RPMI8226 Bone_marrow Cell line GEO GSE55667 GPL570 26728187 txt
shRNA RUNX1 Homo sapiens Runt domain factors Immunoglobulin fold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE24778 GPL5188 20959602 txt
shRNA ZFX Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains DAOY Central_
nervous_
system
Cell line GEO GSE45265 GPL6244 - txt
shRNA RUNX1 Homo sapiens Runt domain factors Immunoglobulin fold H9 Embryo Stem cell GEO GSE79598 GPL17586 27720906 txt
shRNA YY2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HeLa Cervix Cell line GEO GSE14964 GPL570 20215434 txt
shRNA YY1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HeLa Cervix Cell line GEO GSE14964 GPL570 20215434 txt
shRNA FLI1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains STA-ET-7.2 Bone_marrow Cell line GEO GSE14543 GPL96 19404404 txt
shRNA IRF6 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains Primary CD34+ hematopoietic stem/progenitor cells (HSPCs) Fetal_
liver
Primary cell GEO GSE36988 GPL15394 23041383 txt
shRNA TAL1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains HEL Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE54075 GPL13497 24874575 txt
shRNA TAL1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains JURKAT Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE20544 GPL6244 26944678 txt
shRNA MYB Homo sapiens Tryptophan cluster factors Helix-turn-helix domains Primary CD34+ hematopoietic stem/progenitor cells (HSPCs) Fetal_
liver
Primary cell GEO GSE36988 GPL15394 23041383 txt
shRNA MLXIP Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains Nalm6 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE33967 GPL6244 22748921 txt
shRNA HES1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains CUTLL1 Haematopoietic_
and_lymphoid_
tissue_
Blood
Cell line GEO GSE65872 GPL10558 25784680 txt
shRNA HIF1A Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains HepG2 Liver Cell line GEO GSE54360 GPL6244 25489981 txt
shRNA HIF1A Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains HepG2 Liver Cell line GEO GSE44943 GPL6244 23649089 txt
shRNA HIF1A Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains HuH7 Liver Cell line GEO GSE55212 GPL14951 25892225 txt
shRNA FLI1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains WE68 Bone_marrow Cell line GEO GSE14543 GPL96 19404404 txt
shRNA FLI1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains TC252 Bone_marrow Cell line GEO GSE14543 GPL96 19404404 txt
shRNA PRDM14 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains H1-hESC Embryo Stem cell GEO GSE22795 GPL6947 20953172 txt
shRNA FLI1 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains STA-ET-1 Bone_marrow Cell line GEO GSE14543 GPL96 19404404 txt
shRNA MYBL2 Homo sapiens Tryptophan cluster factors Helix-turn-helix domains CD34+ BM cells Bone_marrow Primary cell GEO GSE43400 GPL15401 23878725 txt
shRNA TEAD4 Homo sapiens TEA domain factors Helix-turn-helix domains SNU216 Stomach Cell line GEO GSE44383 GPL10558 24325916 txt
shRNA TCF3 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains MDA-MB468 Mammary_
gland
Cell line GEO GSE38893 GPL6244 23090119 txt
shRNA TAL1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains CD34+ Peripheral_
blood
Primary cell GEO GSE20545 GPL6244 21179004 txt
shRNA ARNT Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains CTB Placenta_
tissue
Primary cell GEO GSE80995 GPL10558 28167044 txt
shRNA STAT1 Homo sapiens STAT domain factors Immunoglobulin fold SCC61 Upper_
aerodigestive_
tract
Cell line GEO GSE15845 GPL6244 19891767 txt
shRNA MITF Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains COLO829 Skin Cell line GEO GSE50649 GPL6244 24443471 txt
shRNA STAT5 Homo sapiens STAT domain factors Immunoglobulin fold CWR22Pc Prostate Cell line GEO GSE68993 GPL16686 - txt
shRNA MYC Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains HT1080 Soft_tissue Cell line GEO GSE60558 GPL16686 25793315 txt
shRNA TWIST1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains CAF Stomach Tissue GEO GSE62740 GPL13607 25368021 txt
shRNA FIP1L1 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR116QBU - 22955616 txt
shRNA HNRNPUL1 Homo sapiens Others TcoF-DB_
TcoF
HepG2 Liver Cell line ENCODE ENCSR689ZJC - 22955616 txt
shRNA PRPF4 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR215FRI - - txt
shRNA HNF1B Homo sapiens Homeo domain factors Helix-turn-helix domains RMG2 Ovary Cell line GEO GSE37290 GPL570 - txt
shRNA TARDBP Homo sapiens Others TcoF-DB_
TcoF
HepG2 Liver Cell line ENCODE ENCSR527QNC - 22955616 txt
shRNA SUB1 Homo sapiens Others TcoF-DB_
TcoF
HepG2 Liver Cell line ENCODE ENCSR997FOT - 22955616 txt
shRNA EWSR1 Homo sapiens Others TcoF-DB_
TcoF
HepG2 Liver Cell line ENCODE ENCSR532ZPP - 22955616 txt
shRNA U2AF1 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR342EDG - 22955616 txt
shRNA RBM25 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR149DMY - 22955616 txt
shRNA SATB1 Homo sapiens Homeo domain factors Helix-turn-helix domains CD4+ T cells Peripheral_
blood
Primary cell GEO GSE17241 GPL2507 20522714 txt
shRNA U2AF2 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR904CJQ - 22955616 txt
shRNA TAF15 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR611ZAL - 22955616 txt
shRNA RBM17 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR385TMY - 22955616 txt
shRNA FUBP1 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR736TAW - 22955616 txt
shRNA WRN Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR093FHC - 22955616 txt
shRNA FUBP1 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR608IXR - 22955616 txt
shRNA MARK2 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR016OIX - 22955616 txt
shRNA TARDBP Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR455TNF - 22955616 txt
shRNA MEF2A Homo sapiens MADS box factors alpha-Helices exposed by beta-structures SPC04 Fetal_
spinal_
cord
Cell line GEO GSE65857 GPL10558 28470180 txt
shRNA NUP35 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR953IQF - 22955616 txt
shRNA AGO2 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR495YSS - 22955616 txt
shRNA MEF2D Homo sapiens MADS box factors alpha-Helices exposed by beta-structures Huh7 Liver Cell line GEO GSE37123 GPL6480 N txt
shRNA HNF1A Homo sapiens Homeo domain factors Helix-turn-helix domains HuH7 Liver Cell line GEO GSE103128 GPL18180 29466992 txt
shRNA NR5A1 Homo sapiens Others TcoF-DB_
TF
NCI-H295R Adrenal_
gland
Cell line GEO GSE26529 GPL6244 21239516 txt
shRNA PTEN Homo sapiens Others TcoF-DB_
TcoF
A431 Skin Cell line GEO GSE7562 GPL570 17560336 txt
shRNA PTEN Homo sapiens Others TcoF-DB_
TcoF
SKBR3 Mammary_
gland
Cell line GEO GSE7562 GPL570 17560336 txt
shRNA POU5F1 Homo sapiens Homeo domain factors Helix-turn-helix domains H1-hESC Embryo Stem cell GEO GSE34904 GPL10558 22482508 txt
shRNA NANOG Homo sapiens Homeo domain factors Helix-turn-helix domains H1-hESC Embryo Stem cell GEO GSE34904 GPL10558 22482508 txt
shRNA POU5F1 Homo sapiens Homeo domain factors Helix-turn-helix domains H1-hESC Embryo Stem cell GEO GSE21135 GPL6947 20526341 txt
shRNA TLX1 Homo sapiens Homeo domain factors Helix-turn-helix domains ALLSIL Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE65496 GPL570 27354269 txt
shRNA GTF2F1 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR188IPO - 22955616 txt
shRNA XRCC5 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR715XZS - 22955616 txt
shRNA HNRNPLL Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR490DYI - 22955616 txt
shRNA HNRNPUL1 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR034VBA - 22955616 txt
shRNA PTEN Homo sapiens Others TcoF-DB_
TcoF
MCF10A Mammary_
gland
Cell line GEO GSE54265 GPL6884 24553445 txt
shRNA HOXA5 Homo sapiens Homeo domain factors Helix-turn-helix domains MCF10A Mammary_
gland
Cell line GEO GSE75840 GPL10558 - txt
shRNA PTEN Homo sapiens Others TcoF-DB_
TcoF
HCC827 Lung Cell line GEO GSE7562 GPL570 17560336 txt
shRNA HNRNPL Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR563YIS - 22955616 txt
shRNA PTEN Homo sapiens Others TcoF-DB_
TcoF
A549 Lung Cell line GEO GSE68869 GPL10558 25995385 txt
shRNA AGO1 Homo sapiens Others TcoF-DB_
TcoF
HepG2 Liver Cell line ENCODE ENCSR533HXS - 22955616 txt
shRNA PSIP1 Homo sapiens Others TcoF-DB_
TcoF
HepG2 Liver Cell line ENCODE ENCSR744YVR - 22955616 txt
shRNA SNRNP70 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR635BOO - 22955616 txt
shRNA SRSF3 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR376FGR - 22955616 txt
shRNA ZEB2 Homo sapiens Homeo domain factors Helix-turn-helix domains MDA-MB231 Mammary_
gland
Cell line GEO GSE27966 GPL570 - txt
shRNA ID1 Homo sapiens Others Basic domains GSC8 Neuroepithelium Stem cell GEO GSE40614 GPL6883 27477274 txt
shRNA HNRNPK Homo sapiens Others Other Cofactors HepG2 Liver Cell line ENCODE ENCSR853ZJS - 22955616 txt
shRNA RBFOX2 Homo sapiens Others Other Cofactors HepG2 Liver Cell line ENCODE ENCSR767LLP - 22955616 txt
shRNA SAFB2 Homo sapiens Others Other Cofactors HepG2 Liver Cell line ENCODE ENCSR110ZYD - 22955616 txt
shRNA HDGF Homo sapiens Others Other Cofactors HepG2 Liver Cell line ENCODE ENCSR634KHL - 22955616 txt
shRNA RBM39 Homo sapiens Others Other Cofactors HepG2 Liver Cell line ENCODE ENCSR760EGM - 22955616 txt
shRNA HNRNPK Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR529JNJ - 22955616 txt
shRNA RBFOX2 Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR336DFS - 22955616 txt
shRNA ZC3H8 Homo sapiens C3H zinc finger factors Zinc-coordinating DNA-binding domains HepG2 Liver Cell line ENCODE ENCSR184YDW - 22955616 txt
shRNA CBFB Homo sapiens Others beta-Scaffold Factors PPC1 Prostate Cell line GEO GSE21561 GPL6480 20607802 txt
shRNA ATM Homo sapiens Others ENCODE_
TF
MCF10A Mammary_
gland
Cell line GEO GSE54268 GPL10558 24553445 txt
shRNA ILF2 Homo sapiens Others Other Cofactors HepG2 Liver Cell line ENCODE ENCSR366FFV - 22955616 txt
shRNA RBM15 Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR385UPQ - 22955616 txt
shRNA CCAR2 Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR984CLJ - 22955616 txt
shRNA SAFB2 Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR770LYW - 22955616 txt
shRNA RBM39 Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR678WOA - 22955616 txt
shRNA ILF2 Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR126ARZ - 22955616 txt
shRNA RBM15 Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR627NVU - 22955616 txt
shRNA ID1 Homo sapiens Others Basic domains GSC2 Neuroepithelium Stem cell GEO GSE40614 GPL6883 27477274 txt
shRNA TOX Homo sapiens Others Other all-alpha-helical DNA-binding domains HPB-ALL Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE89607 GPL16686 - txt
shRNA TOX Homo sapiens Others Other all-alpha-helical DNA-binding domains CCRF-CEM Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE89607 GPL16686 - txt
shRNA IRX1 Homo sapiens Others Helix-turn-helix domains 143B Bone_marrow Cell line GEO GSE55958 GPL15491 25822025 txt
shRNA BRD4 Homo sapiens Others TcoF-DB_
TcoF
HEK293 Embryo_
kidney
Cell line GEO GSE39580 GPL6480 22897906 txt
shRNA NONO Homo sapiens NonO domain factors Yet undefined DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR398HXV - 22955616 txt
shRNA NONO Homo sapiens NonO domain factors Yet undefined DNA-binding domains HepG2 Liver Cell line ENCODE ENCSR647NYX - 22955616 txt
shRNA PSIP1 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR611LQB - 22955616 txt
shRNA ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains HCT116 Colon Cell line GEO GSE38690 GPL10739 23720198 txt
shRNA ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains 293T Embryo_
kidney
Cell line GEO GSE69661 GPL17077 - txt
shRNA SUB1 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR047AJA - 22955616 txt
shRNA AGO1 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR268JDD - 22955616 txt
shRNA U2AF1 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR372UWV - 22955616 txt
shRNA EWSR1 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR831YGP - 22955616 txt
shRNA TARDBP Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR134JRE - 22955616 txt
shRNA ZHX2 Homo sapiens Homeo domain factors Helix-turn-helix domains 786-O Kidney Cell line GEO GSE110094 GPL16686 30026228 txt
shRNA NR2E1 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains PBT003 Neuroepithelium Primary cell GEO GSE75945 GPL15207 26838672 txt
shRNA HNF4G Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains 22RV1 Prostate Cell line GEO GSE85242 GPL10558 - txt
shRNA HNRNPL Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR155BMF - 22955616 txt
shRNA AR Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains CWR22Pc Prostate Cell line GEO GSE68993 GPL16686 - txt
shRNA CCAR2 Homo sapiens Others Other Cofactors HepG2 Liver Cell line ENCODE ENCSR237IWZ - - txt
shRNA AR Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains CWR22Rv1 Prostate Cell line GEO GSE86547 GPL16686 28416760 txt
shRNA ILF3 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR942MBU - 22955616 txt
shRNA SRSF9 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR597XHH - 22955616 txt
shRNA SRSF7 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR017PRS - 22955616 txt
shRNA RBM15 Homo sapiens Others Other Cofactors HepG2 Liver Cell line ENCODE ENCSR599PXD - 22955616 txt
shRNA PCBP2 Homo sapiens Others TcoF-DB_
TF
HepG2 Liver Cell line ENCODE ENCSR028ITN - 22955616 txt
shRNA POSTN Homo sapiens Others Unclassified Structure GSC272 Brain Cell line GEO GSE73071 GPL570 27307601 txt
shRNA TAF15 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR031RZS - 22955616 txt
shRNA GRHL2 Homo sapiens Grainyhead domain factors Immunoglobulin fold OVCA429 Ovary Cell line GEO GSE71017 GPL16686 26887977 txt
shRNA GRHL2 Homo sapiens Grainyhead domain factors Immunoglobulin fold SKOV3 Ovary Cell line GEO GSE90132 GPL4133 28278050 txt
shRNA HSF1 Homo sapiens Heat shock factors Helix-turn-helix domains KYN2 Liver Cell line GEO GSE47693 GPL6884 - txt
shRNA RBM22 Homo sapiens Others TcoF-DB_
TF
HepG2 Liver Cell line ENCODE ENCSR330KHN - - txt
shRNA BCLAF1 Homo sapiens Others TcoF-DB_
TF
HepG2 Liver Cell line ENCODE ENCSR481AYC - 22955616 txt
shRNA PCBP1 Homo sapiens Others TcoF-DB_
TF
HepG2 Liver Cell line ENCODE ENCSR635FRH - 22955616 txt
shRNA HSF1 Homo sapiens Heat shock factors Helix-turn-helix domains A375 Skin Cell line GEO GSE44867 GPL570 23615731 txt
shRNA CEBPZ Homo sapiens Others TcoF-DB_
TF
HepG2 Liver Cell line ENCODE ENCSR929PXS - 22955616 txt
shRNA CPEB1 Homo sapiens Others Unclassified Structure HeLa Cervix Cell line GEO GSE15549 GPL4133 20364142 txt
shRNA NFYA Homo sapiens Heteromeric CCAAT-binding factors Other all-alpha-helical DNA-binding domains HeLaS3 Cervix Cell line GEO GSE40215 GPL570 23595228 txt
shRNA RBM34 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR560AYQ - 22955616 txt
shRNA U2AF2 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR426UUG - 22955616 txt
shRNA NFYA Homo sapiens Heteromeric CCAAT-binding factors Other all-alpha-helical DNA-binding domains HCT1163 Colon Cell line GEO GSE70543 GPL17889 - txt
shRNA BCLAF1 Homo sapiens Others TcoF-DB_
TF
RKO Colon Cell line GEO GSE52990 GPL570 25091051 txt
shRNA GTF2F1 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR295XKC - - txt
shRNA U2AF2 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR622MCX - 22955616 txt
shRNA FIP1L1 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR511BNY - 22955616 txt
shRNA ILF3 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR269HQA - 22955616 txt
shRNA XRCC5 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR732IYM - 22955616 txt
shRNA FOXO1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains 018Z Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE86066 GPL6244 - txt
shRNA POLR2G Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR936TED - 22955616 txt
shRNA YBX3 Homo sapiens Cold-shock domain factors beta-Barrel DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR306EIU - 22955616 txt
shRNA PTBP1 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR527IVX - 22955616 txt
shRNA YBX3 Homo sapiens Cold-shock domain factors beta-Barrel DNA-binding domains HepG2 Liver Cell line ENCODE ENCSR494VSD - - txt
shRNA YBX1 Homo sapiens Cold-shock domain factors beta-Barrel DNA-binding domains MDA Mammary_
gland
Cell line GEO GSE63565 GPL10558 25957686 txt
shRNA YBX1 Homo sapiens Cold-shock domain factors beta-Barrel DNA-binding domains MDA Mammary_
gland
Cell line GEO GSE63564 GPL10558 25957686 txt
shRNA YBX1 Homo sapiens Cold-shock domain factors beta-Barrel DNA-binding domains MDA Mammary_
gland
Cell line GEO GSE63563 GPL10558 25957686 txt
shRNA YBX1 Homo sapiens Cold-shock domain factors beta-Barrel DNA-binding domains MDA Mammary_
gland
Cell line GEO GSE63562 GPL10558 25957686 txt
shRNA YBX1 Homo sapiens Cold-shock domain factors beta-Barrel DNA-binding domains MDA-LM2 Mammary_
gland
Cell line GEO GSE63562 GPL10558 25957686 txt
shRNA FOXO1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains EWS-FLI1 Bone Cell line GEO GSE37409 GPL570 23995784 txt
shRNA PTBP1 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR239BCO - 22955616 txt
shRNA FOXO1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains BL41 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE109911 GPL6244 31557894 txt
shRNA SRSF7 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR464ADT - 22955616 txt
shRNA SRSF9 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR113HRG - 22955616 txt
shRNA RBM17 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR898OPN - 22955616 txt
shRNA FOXO1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains Namalwa Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE109911 GPL6244 31557894 txt
shRNA FOXO1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains RS4;11 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE86066 GPL6244 - txt
shRNA SSB Homo sapiens Others Unclassified Structure HepG2 Liver Cell line ENCODE ENCSR278CHI - - txt
shRNA FOXA1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains 22RV1 Prostate Cell line GEO GSE37314 GPL10558 23539448 txt
shRNA DROSHA Homo sapiens Others Unclassified Structure K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR624XHG - 22955616 txt
shRNA SSB Homo sapiens Others Unclassified Structure K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR891AXF - 22955616 txt
shRNA PCBP2 Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR648QFY - 22955616 txt
shRNA TCF7L1 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains HCT116 Colon Cell line GEO GSE92446 GPL10558 28450117 txt
shRNA FUS Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR325OOM - 22955616 txt
shRNA PTBP1 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR064DXG - 22955616 txt
shRNA RBM25 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR610AEI - 22955616 txt
shRNA SOX2 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains H1-hESC Embryo Stem cell GEO GSE34918 GPL10558 22482508 txt
shRNA SRSF4 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR697GLD - 22955616 txt
shRNA SOX2 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains H1-hESC Embryo Stem cell GEO GSE34904 GPL10558 22482508 txt
shRNA FUS Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR927JXU - 22955616 txt
shRNA RBM22 Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR947OIM - 22955616 txt
shRNA PCBP1 Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR545AIK - 22955616 txt
shRNA BCLAF1 Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR410ZPU - 22955616 txt
shRNA RBM34 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR318HAT - 22955616 txt
shRNA SOX11 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains MCL Lymph Cell line GEO GSE52892 GPL570 25092176 txt
shRNA NFYA Homo sapiens Heteromeric CCAAT-binding factors Other all-alpha-helical DNA-binding domains H322 Lung Cell line GEO GSE70543 GPL17889 - txt
shRNA NKRF Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR231PWH - 22955616 txt
shRNA SOX4 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains MDA-MB231 Mammary_
gland
Cell line GEO GSE63957 GPL10904 - txt
shRNA SOX2 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains HF2303 Neuroepithelium Primary cell GEO GSE51441 GPL10558 24726753 txt
shRNA SOX4 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains ACC3 Parotid_
gland
Cell line GEO GSE4225 GPL96 16636670 txt
shRNA PHB Homo sapiens Others TcoF-DB_
TF
Embryonic stem cells (ESCs) Embryo Stem cell GEO GSE71765 GPL570 N txt
RNAi Npas4 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Hippocampal Neurons Brain Primary cell GEO GSE11258 GPL1261 18815592 txt
knockout Shox2 Mus musculus Homeo domain factors Helix-turn-helix domains Right atria Heart Tissue GEO GSE39924 GPL13730 23455426 txt
knockout Nr2f2 Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains E14.5 Ovary Ovary Tissue GEO GSE100015 GPL1261 28818950 txt
knockout Lhx8 Mus musculus Homeo domain factors Helix-turn-helix domains Oocytes Gonads Primary cell GEO GSE109473 GPL6887 29329412 txt
knockout Runx2 Mus musculus Runt domain factors Immunoglobulin fold Embryonic humeri Humeri Tissue GEO GSE4911 GPL82 16829211 txt
knockout Srf Mus musculus MADS box factors alpha-Helices exposed by beta-structures Denate gyrus of hippocampus Brain Tissue GEO GSE60772 GPL17543 25636686 txt
knockout Stat4 Mus musculus STAT domain factors Immunoglobulin fold Lamina propria lymphocytes Lymph Primary cell GEO GSE124078 GPL11202 30770344 txt
knockout Meis1 Mus musculus Homeo domain factors Helix-turn-helix domains KSL hematopoietic cells Hematopoietic Stem cell GEO GSE38336 GPL4134 24498346 txt
knockout Nr2f2 Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains E16.5 Ovary Ovary Tissue GEO GSE100015 GPL1261 28818950 txt
knockout Vdr Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Skin Skin Tissue GEO GSE68729 GPL6885 N txt
knockout Tbx1 Mus musculus T-Box factors Immunoglobulin fold Otic vesicles Ear Tissue GEO GSE34065 GPL1261 N txt
knockout Vax2 Mus musculus Homeo domain factors Helix-turn-helix domains Whole eye Eye Tissue GEO GSE19626 GPL8321 21148184 txt
knockout Otx2 Mus musculus Homeo domain factors Helix-turn-helix domains Retina Eye Tissue GEO GSE21900 GPL1261 21602925 txt
knockout Pitx2 Mus musculus Homeo domain factors Helix-turn-helix domains Cornea Eye Tissue GEO GSE76047 GPL10787 26968737 txt
knockout Adnp Mus musculus Homeo domain factors Helix-turn-helix domains Whole embryonic body Embryo Tissue GEO GSE4068 GPL339 30106381 txt
knockout Vdr Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Bone marrow-derived macrophages Bone_marrow Primary cell GEO GSE2421 GPL339 16118315 txt
knockout Stat3 Mus musculus STAT domain factors Immunoglobulin fold Lung typeII cells Lung Cell line GEO GSE6846 GPL1261 18070348 txt
knockout Otx2 Mus musculus Homeo domain factors Helix-turn-helix domains Ganglionic eminences and septum Brain Tissue GEO GSE69547 GPL7202 26166575 txt
knockout Stat6 Mus musculus STAT domain factors Immunoglobulin fold Bone marrow-derived macrophages Bone_marrow Primary cell GEO GSE25088 GPL1261 21093321 24314139 txt
knockout En2 Mus musculus Homeo domain factors Helix-turn-helix domains Cerebellum Brain Tissue GEO GSE51612 GPL7202 24355397 txt
knockout Smad1 Mus musculus SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold Lung left lobe Lung Tissue GEO GSE26502 GPL1261 21270055 txt
knockout Runx2 Mus musculus Runt domain factors Immunoglobulin fold Embryonic humeri Humeri Tissue GEO GSE4911 GPL81 16829211 txt
knockout Smad4 Mus musculus SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold Aortic arteries Aorta Tissue GEO GSE67182 GPL1261 N txt
knockout Runx1 Mus musculus Runt domain factors Immunoglobulin fold ProB cells Lymph Cell line GEO GSE45424 GPL7202 23704093 txt
knockout Runx1 Mus musculus Runt domain factors Immunoglobulin fold Luminal epithelial cells Mammary_
gland
Primary cell GEO GSE47375 GPL1261 25415051 txt
knockout Gata5 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Left lung Lung Tissue GEO GSE47425 GPL1261 24199649 txt
knockout Srf Mus musculus MADS box factors alpha-Helices exposed by beta-structures Aorta Aorta Tissue GEO GSE34545 GPL1261 N txt
knockout Irf6 Mus musculus Tryptophan cluster factors Helix-turn-helix domains Skin Skin Tissue GEO GSE5800 GPL1261 17041601 txt
knockout Elf5 Mus musculus Tryptophan cluster factors Helix-turn-helix domains Mammary gland Mammary_
gland
Tissue GEO GSE32103 GPL1261 23086238 txt
knockout Mbd2 Mus musculus Others TcoF-DB_
TF
GFP+ BM leukemia cells Lymph Primary cell GEO GSE105763 GPL1261 29330145 txt
knockout Tet2 Mus musculus Others TcoF-DB_
TF
Kidney Kidney Tissue GEO GSE116911 GPL1261 N txt
knockout Irf8 Mus musculus Tryptophan cluster factors Helix-turn-helix domains Splenic CD11b+Gr-1 cells Lymph Primary cell GEO GSE39228 GPL6887 24091328 txt
knockout Mkx Mus musculus Homeo domain factors Helix-turn-helix domains PDL Tooth Tissue GEO GSE92331 GPL21810 27993989 txt
knockout Hoxc13 Mus musculus Homeo domain factors Helix-turn-helix domains Skin Skin Tissue GEO GSE23759 GPL9746 N txt
knockout Lhx8 Mus musculus Homeo domain factors Helix-turn-helix domains Ovary Ovary Tissue GEO GSE7774 GPL1261 18509161 txt
knockout Mbd2 Mus musculus Others TcoF-DB_
TF
CD4+CD8+ thymocytes Thymus Primary cell GEO GSE105763 GPL1261 29330145 txt
knockout Shox2 Mus musculus Homeo domain factors Helix-turn-helix domains Embryonic forelimb Muscle Tissue GEO GSE51523 GPL17791 24347445 txt
knockout Nelfb Mus musculus Others General Cofactors Embryonic fibroblasts Embryo Stem cell GEO GSE24114 GPL6885 21865163 txt
knockout Prox1 Mus musculus Homeo domain factors Helix-turn-helix domains Liver Liver Tissue GEO GSE36583 GPL1261 24449835 txt
knockout Cbx2 Mus musculus Others Chromatin Remodeling Factors Embryonic gonads Gonads Tissue GEO GSE29485 GPL1261 22186409 txt
knockout Il4r Mus musculus Others Unclassified Structure Whole lung Lung Tissue GEO GSE26476 GPL1261 21464224 txt
knockout Vdr Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Skin Skin Tissue GEO GSE68727 GPL6885 N txt
knockout Lmx1b Mus musculus Homeo domain factors Helix-turn-helix domains Proximal limb Limb Tissue GEO GSE10516 GPL1261 18351676 txt
knockout Lmx1b Mus musculus Homeo domain factors Helix-turn-helix domains Kidney Kidney Tissue GEO GSE12008 GPL4134 18996370 txt
knockout Gata2 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains renal collecting duct cells Kidney Tissue GEO GSE52448 GPL4134 24636993 txt
knockout Spdef Mus musculus Tryptophan cluster factors Helix-turn-helix domains Colon Colon Tissue GEO GSE20299 GPL8759 20801882 txt
knockout Hnf1a Mus musculus Homeo domain factors Helix-turn-helix domains Jejunum Intestine Tissue GEO GSE23040 GPL1261 20808783 txt
knockout En2 Mus musculus Homeo domain factors Helix-turn-helix domains Hippocampus Hippocampus Tissue GEO GSE51612 GPL7202 24355397 txt
knockout Pax5 Mus musculus Paired box factors Helix-turn-helix domains B220+ cells Bone_marrow Primary cell GEO GSE39554 GPL1261 23019372 txt
knockout Gata4 Mus musculus Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains Jejunum Intestine Tissue GEO GSE11194 GPL1261 18812176 txt
knockout Pax6 Mus musculus Paired box factors Helix-turn-helix domains Surface ectoderm Embryo Tissue GEO GSE49228 GPL6887 21540023 txt
knockout Runx1 Mus musculus Runt domain factors Immunoglobulin fold KSL cells Bone_marrow Primary cell GEO GSE40155 GPL8321 22919028 txt
knockout Tbx1 Mus musculus T-Box factors Immunoglobulin fold Otic vesicles Ear Tissue GEO GSE34064 GPL1261 N txt
knockout Spdef Mus musculus Tryptophan cluster factors Helix-turn-helix domains Stomach Stomach Tissue GEO GSE20299 GPL8759 20801882 txt
knockout Runx1 Mus musculus Runt domain factors Immunoglobulin fold Embryo Embryo Tissue GEO GSE2592 GPL1261 18671852 txt
knockout Runx2 Mus musculus Runt domain factors Immunoglobulin fold Embryonic humeri Humeri Tissue GEO GSE4911 GPL83 16829211 txt
knockout Vdr Mus musculus Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains Skin Skin Tissue GEO GSE68723 GPL6885 N txt
knockout Bcl11a Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Bone marrow erythoid progenitors Bone_marrow Primary cell GEO GSE28333 GPL1261 21998251 txt
knockout Atf4 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Embryonic neurons Brain Primary cell GEO GSE10470 GPL6100 18458112 txt
knockout Mafg Mus musculus Basic leucine zipper factors (bZIP) Basic domains Whole embryo Embryo Tissue GEO GSE29558 GPL4134 22158967 txt
knockout Atf3 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Breast tumor-associated macrophage Mammary_
gland
Primary cell GEO GSE36904 GPL7202 23921126 txt
knockout Cebpb Mus musculus Basic leucine zipper factors (bZIP) Basic domains Mammary epithlial cells (MECs) Mammary_
gland
Cell line GEO GSE16380 GPL1261 20054865 txt
knockout Atf4 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Quadriceps femoris muscles Muscle Cell line GEO GSE72658 GPL6885 26338703 txt
knockout Thap1 Mus musculus C2CH THAP-type zinc finger factors Zinc-coordinating DNA-binding domains Cerebellum Brain Tissue GEO GSE97372 GPL6885 28697333 txt
knockout Thap1 Mus musculus C2CH THAP-type zinc finger factors Zinc-coordinating DNA-binding domains Cortex Brain Tissue GEO GSE97372 GPL6885 28697333 txt
knockout Thap1 Mus musculus C2CH THAP-type zinc finger factors Zinc-coordinating DNA-binding domains Striatum Brain Tissue GEO GSE97372 GPL6885 28697333 txt
knockout Thap11 Mus musculus C2CH THAP-type zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Stem cell GEO GSE120008 GPL1261 N txt
knockout Thap11 Mus musculus C2CH THAP-type zinc finger factors Zinc-coordinating DNA-binding domains Heart Heart Tissue GEO GSE103959 GPL6887 29117561 txt
knockout Nfil3 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Prepro NK cells Bone_marrow Primary cell GEO GSE45955 GPL11180 N txt
knockout Bcl6 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Bone marrow-derived macrophages Bone_marrow Primary cell GEO GSE16527 GPL1261 N txt
knockout Bcl6 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Myeloid cells Bone_marrow Primary cell GEO GSE24813 GPL1261 21911423 txt
knockout Gfi1b Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Ter119 positive erythroid cells Bone_marrow Primary cell GEO GSE54205 GPL1261 24800817 txt
knockout Rest Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Brain Brain Tissue GEO GSE68459 GPL1261 26745185 txt
knockout Rest Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Brain Brain Tissue GEO GSE68368 GPL6885 26745185 txt
knockout Gfi1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains T-cells Cord_Blood Primary cell GEO GSE4940 GPL339 18034420 txt
knockout Snai1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Embryoid body Embryo Tissue GEO GSE53106 GPL1261 24401905 txt
knockout Snai1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Embryonic stem cells (ESCs) Embryo Stem cell GEO GSE53108 GPL11180 24401905 txt
knockout Snai1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Embryonic stem cells (ESCs) Embryo Stem cell GEO GSE53107 GPL1261 24401905 txt
knockout Bhlha9 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Whole limb bud Limb Tissue GEO GSE81223 GPL1261 28324176 txt
knockout Arid1a Mus musculus ARID domain factors Helix-turn-helix domains Liver Liver Tissue GEO GSE58964 GPL7202 N txt
knockout Arid1a Mus musculus ARID domain factors Helix-turn-helix domains Ovary Ovary Tissue GEO GSE67695 GPL1261 26279473 txt
knockout Jarid2 Mus musculus ARID domain factors Helix-turn-helix domains Embryonic pancreas Pancreas Tissue GEO GSE77238 GPL1261 28912479 txt
knockout Neurod1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Pineal gland Eye Tissue GEO GSE6030 GPL1261 17630985 txt
knockout Neurod1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Pineal gland Eye Tissue GEO GSE35396 GPL1261 22784109 txt
knockout Nhlh2 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Retina Eye Tissue GEO GSE16756 GPL8321 N txt
knockout Neurod1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Retina Eye Tissue GEO GSE35396 GPL1261 22784109 txt
knockout TP53 Homo sapiens p53 domain factors Immunoglobulin fold MM1S Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE73665 GPL10558 N txt
knockout TP53 Homo sapiens p53 domain factors Immunoglobulin fold MOLP8 Haematopoietic_
and_lymphoid_
tissue
Cell line GEO GSE73665 GPL10558 N txt
knockout Atoh1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Intestinal epithelial Lgr5(hi) stem cells Gastrointestinal_
tissue
Stem cell GEO GSE41541 GPL8321 23428873 txt
knockout Pbx1 Mus musculus Homeo domain factors Helix-turn-helix domains BM cells Bone_marrow Primary cell GEO GSE30028 GPL1261 23660001 txt
knockout Ahr Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Liver Liver Tissue GEO GSE10082 GPL1261 16214954 txt
knockout Ahr Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Lung Lung Tissue GEO GSE48130 GPL4134 25119038 txt
knockout Sohlh2 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Ovary Ovary Tissue GEO GSE24816 GPL6887 N txt
knockout Sohlh1 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Ovary Ovary Tissue GEO GSE24816 GPL6887 N txt
knockout Id2 Mus musculus Basic helix-loop-helix factors (bHLH) Basic domains Distal half of midgut Small_
intestine
Tissue GEO GSE43014 GPL2995 29463648 txt
knockout Tcfap2c Mus musculus Basic helix-span-helix factors (bHSH) Basic domains Embryonic stem cells (ESCs) Embryo Stem cell GEO GSE45941 GPL1261 23967156 txt
knockout Tcfap2c Mus musculus Basic helix-span-helix factors (bHSH) Basic domains Primordial germ cells (PGCs) Embryonic Primary cell GEO GSE45941 GPL1261 23967156 txt
knockout Cebpe Mus musculus Basic leucine zipper factors (bZIP) Basic domains Bone marrow-derived macrophages Bone_marrow Primary cell GEO GSE23821 GPL1261 21072215 txt
knockout Cebpb Mus musculus Basic leucine zipper factors (bZIP) Basic domains Bone marrow-derived macrophages Bone_marrow Primary cell GEO GSE23821 GPL1261 21072215 txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Juvenile testes Testis Tissue GEO GSE22500 GPL10572 20616082 txt
knockout Sox9 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Trachea Lung Tissue GEO GSE97788 GPL6885 27941074 txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Ovary Ovary Tissue GEO GSE41897 GPL1261 N txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Ovary Ovary Tissue GEO GSE41896 GPL1261 N txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Juvenile testes Testis Tissue GEO GSE22510 GPL10572 20616082 txt
knockout Sox6 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Cardiac ventricle Heart Tissue GEO GSE60958 GPL6887 27832192 txt
knockout Sox11 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Retina Eye Tissue GEO GSE43089 GPL1261 N txt
knockout Sox11 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Cortex Brain Tissue GEO GSE44308 GPL1261 23483698 txt
knockout Hsf4 Mus musculus Heat shock factors Helix-turn-helix domains Lens Eye Tissue GEO GSE12415 GPL1261 N txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Juvenile testes Testis Tissue GEO GSE22508 GPL10572 20616082 txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Juvenile testes Testis Tissue GEO GSE22507 GPL10572 20616082 txt
knockout ATF3 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains HCT116 Colon Cell line GEO GSE74362 GPL10558 27146783 txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Testes Testis Tissue GEO GSE41897 GPL1261 N txt
knockout Grhl2 Mus musculus Grainyhead domain factors Immunoglobulin fold V6.5 Embryo Cell line GEO GSE93146 GPL6885 30017589 txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Testes Testis Tissue GEO GSE41895 GPL1261 N txt
knockout Dmrt1 Mus musculus DM-type intertwined zinc finger factors Zinc-coordinating DNA-binding domains Testes Testis Tissue GEO GSE18396 GPL1261 20007774 txt
knockout E2f4 Mus musculus Fork head / winged helix factors Helix-turn-helix domains Forebrain Brain Tissue GEO GSE10401 GPL340 N txt
knockout E2f4 Mus musculus Fork head / winged helix factors Helix-turn-helix domains Forebrain Brain Tissue GEO GSE10401 GPL339 N txt
knockout Foxo1 Mus musculus Fork head / winged helix factors Helix-turn-helix domains Ventromedial hypothalamus Brain Tissue GEO GSE36948 GPL6887 N txt
knockout Foxa2 Mus musculus Fork head / winged helix factors Helix-turn-helix domains Whole lung Lung Tissue GEO GSE19204 GPL1261 20483781 txt
knockout Foxp1 Mus musculus Fork head / winged helix factors Helix-turn-helix domains Lens Eye Tissue GEO GSE93693 GPL10787 28384713 txt
knockout Sall1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Kidney Kidney Tissue GEO GSE45841 GPL10787 24744442 txt
knockout Prdm14 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains ES cells Embryo Cell line GEO GSE45507 GPL6887 23670199 txt
knockout Snai1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Teratoma Embryo Tissue GEO GSE53106 GPL1261 24401905 txt
knockout Sp3 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Heart Heart Tissue GEO GSE9124 GPL1261 17923686 txt
knockout Yy1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Jejunum crypt epithelium Intestine Tissue GEO GSE53496 GPL1261 24821761 txt
knockout Prdm1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Mid-intestine Intestine Tissue GEO GSE30556 GPL6885 21878906 txt
knockout Snai1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Small intestinal organoid Intestine Tissue GEO GSE65005 GPL6887 27054090 txt
knockout Plagl2 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Small intestine Intestine Tissue GEO GSE9123 GPL1261 17983586 txt
knockout Wt1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Kidney Kidney Tissue GEO GSE58073 GPL2995 25031030 txt
knockout Sall1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Kidney Kidney Tissue GEO GSE45844 GPL7202 24744442 txt
knockout Klf6 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Liver Liver Tissue GEO GSE85381 GPL11180 N txt
knockout Gfi1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains RAW264.7 Macrophage_
cells
Cell line GEO GSE152868 GPL1261 N txt
knockout Yy1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Skeletal muscle Muscle Tissue GEO GSE39009 GPL8321 22711985 txt
knockout STAT1 Homo sapiens STAT domain factors Immunoglobulin fold Huh-7.5 Liver Cell line GEO GSE84693 GPL16686 27929099 txt
knockout Meis1 Mus musculus Homeo domain factors Helix-turn-helix domains Immortalized myeloid cell Bone_marrow Primary cell GEO GSE50645 GPL11180 27018596 txt
knockout Sox21 Mus musculus High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains Incisor Tooth Tissue GEO GSE99359 GPL13912 32674056 txt
knockout Wt1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Oviduct Oviduct Tissue GEO GSE75924 GPL1261 28334862 txt
knockout Yy1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Subcutaneous white adipose tissue White_
adipose_
tissue
Tissue GEO GSE68382 GPL8321 26503783 txt
knockout Yy1 Mus musculus C2H2 zinc finger factors Zinc-coordinating DNA-binding domains Visceral white adipose tissue White_
adipose_
tissue
Tissue GEO GSE70562 GPL8321 26503783 txt
knockdown Erg Mus musculus Tryptophan cluster factors Helix-turn-helix domains HSPCs Bone_marrow Primary cell GEO GSE48600 GPL1261 28436588 txt
knockdown Cbfb Mus musculus Others beta-Scaffold Factors Peripheral CD4+CD25hi cells Peripheral_
blood
Primary cell GEO GSE18148 GPL1261 19800266 txt
knockdown Batf2 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Bone marrow-derived macrophages Bone_marrow Primary cell GEO GSE59210 GPL6887 25957166 txt
knockdown Atf3 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Ly6G+ neutrophils Bone_marrow Primary cell GEO GSE53973 GPL13912 24470589 txt
knockdown Tet2 Mus musculus Others TcoF-DB_
TF
GMPs Muscle Cell line GEO GSE42666 GPL13912 24218139 txt
knockdown Tet2 Mus musculus Others TcoF-DB_
TF
LSK Muscle Cell line GEO GSE42666 GPL13912 24218139 txt
knockdown Nrf1 Mus musculus Basic leucine zipper factors (bZIP) Basic domains Liver Liver Tissue GEO GSE35124 GPL4134 22586274 txt
knockdown SOX9 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains HepG2 Liver Cell line GEO GSE143477 GPL15207 N txt
esiRNA BACH1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains HEK293T Embryo_
kidney
Cell line GEO GSE28050 GPL570 21555518 txt
CRISPRko GRHL2 Homo sapiens Grainyhead domain factors Immunoglobulin fold A2780s Ovary Cell line GEO GSE90132 GPL4133 28278050 txt
CRISPRi SETDB1 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR819PCU - 22955616 txt
CRISPRi RBBP7 Homo sapiens Others Chromatin Remodeling Factors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR235ZEI - 22955616 txt
CRISPRi NFE2L1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR385ZTW - 22955616 txt
CRISPRi THAP1 Homo sapiens C2CH THAP-type zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR294ZCD - 22955616 txt
CRISPRi SIX5 Homo sapiens Homeo domain factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR104QKG - 22955616 txt
CRISPRi HOXB4 Homo sapiens Homeo domain factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR359VJC - - txt
CRISPRi HMBOX1 Homo sapiens Homeo domain factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR942XXL - 22955616 txt
CRISPRi DLX1 Homo sapiens Homeo domain factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR862UHT - 22955616 txt
CRISPRi MEIS2 Homo sapiens Homeo domain factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR733TFF - 22955616 txt
CRISPRi HOXB9 Homo sapiens Homeo domain factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR810RIC - 22955616 txt
CRISPRi SMAD5 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR731FEO - 22955616 txt
CRISPRi CTBP1 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR171RTN - 22955616 txt
CRISPRi STAT1 Homo sapiens STAT domain factors Immunoglobulin fold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR184VVN - 22955616 txt
CRISPRi JUND Homo sapiens Basic leucine zipper factors (bZIP) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR389OCD - 22955616 txt
CRISPRi BACH1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR190RZZ - 22955616 txt
CRISPRi UBTF Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR608ORR - 22955616 txt
CRISPRi ATF3 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR123IMQ - 22955616 txt
CRISPRi NRF1 Homo sapiens Basic leucine zipper factors (bZIP) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR299HUJ - 22955616 txt
CRISPRi STAT5A Homo sapiens STAT domain factors Immunoglobulin fold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR376CFR - 22955616 txt
CRISPRi STAT6 Homo sapiens STAT domain factors Immunoglobulin fold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR024HAR - 22955616 txt
CRISPRi STAT1 Homo sapiens STAT domain factors Immunoglobulin fold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR184VVN - 22955616 txt
CRISPRi STAT2 Homo sapiens STAT domain factors Immunoglobulin fold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR469EFL - 22955616 txt
CRISPRi TBL1XR1 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR800PWS - 22955616 txt
CRISPRi HMGN3 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR160YSN - 22955616 txt
CRISPRi HDAC8 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR369BHC - 22955616 txt
CRISPRi RNF2 Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR043UMW - 22955616 txt
CRISPRi TARDBP Homo sapiens Others TcoF-DB_
TcoF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR731XIE - 22955616 txt
CRISPRi ZNF143 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR781XJD - 22955616 txt
CRISPRi TFDP1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR552HTC - 22955616 txt
CRISPRi RFX5 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR619EYC - 22955616 txt
CRISPRi FOXM1 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR701TVL - 22955616 txt
CRISPRi FOXK2 Homo sapiens Fork head / winged helix factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR773VKE - 22955616 txt
CRISPRi HMGN2 Homo sapiens Others Unclassified Structure K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR243VNX - 22955616 txt
CRISPRi HMGN1 Homo sapiens Others Unclassified Structure K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR011GAO - 22955616 txt
CRISPRi HSF1 Homo sapiens Heat shock factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR734VBC - 22955616 txt
CRISPRi NFYB Homo sapiens Heteromeric CCAAT-binding factors Other all-alpha-helical DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR171KMM - 22955616 txt
CRISPRi ZNF384 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR103URL - 22955616 txt
CRISPRi KLF2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR620DOP - 22955616 txt
CRISPRi HINFP Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR713AEC - 22955616 txt
CRISPRi SP2 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR715EDZ - 22955616 txt
CRISPRi HMGA1 Homo sapiens A.T hook factors beta-Sheet binding to DNA K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR069OUL - 22955616 txt
CRISPRi SP1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR650QAK - 22955616 txt
CRISPRi ZBTB33 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR223QTD - 22955616 txt
CRISPRi NFYA Homo sapiens Heteromeric CCAAT-binding factors Other all-alpha-helical DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR096VPS - 22955616 txt
CRISPRi NFYB Homo sapiens Heteromeric CCAAT-binding factors Other all-alpha-helical DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR171KMM - 22955616 txt
CRISPRi ZC3H11A Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR911BML - 22955616 txt
CRISPRi SMARCA4 Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR126GEQ - 22955616 txt
CRISPRi ZNF395 Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR267BHU - 22955616 txt
CRISPRi MAF1 Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR733ROU - 22955616 txt
CRISPRi RELA Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR052ZPX - 22955616 txt
CRISPRi NFATC1 Homo sapiens Rel homology region (RHR) factors Immunoglobulin fold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR381TNV - 22955616 txt
CRISPRi WHSC1 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR181WYS - 22955616 txt
CRISPRi ERF Homo sapiens Tryptophan cluster factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR268DNJ - 22955616 txt
CRISPRi ILF2 Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR073QLQ - 22955616 txt
CRISPRi TLE2 Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR399QAP - 22955616 txt
CRISPRi GATA1 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR850LOZ - 22955616 txt
CRISPRi SNW1 Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR409OFU - 22955616 txt
CRISPRi GATA2 Homo sapiens Other C4 zinc finger-type factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR557BMX - 22955616 txt
CRISPRi USF2 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR052BWT - 22955616 txt
CRISPRi USF1 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR545HTM - 22955616 txt
CRISPRi MXD3 Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR104JMN - 22955616 txt
CRISPRi MITF Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR905SEH - - txt
CRISPRi LDB1 Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR046FQX - 22955616 txt
CRISPRi DPF2 Homo sapiens Others Chromatin Remodeling Factors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR028FBD - 22955616 txt
CRISPRi TEAD2 Homo sapiens TEA domain factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR074FBG - 22955616 txt
CRISPRi SRF Homo sapiens MADS box factors alpha-Helices exposed by beta-structures K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR084NTT - 22955616 txt
CRISPRi TRIM28 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR591QYK - 22955616 txt
CRISPRi CITED2 Homo sapiens Others Co-activator/repressors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR200UDS - 22955616 txt
CRISPRi ARID3A Homo sapiens ARID domain factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR898UNK - 22955616 txt
CRISPRi NR2F2 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR688UTN - 22955616 txt
CRISPRi TEAD4 Homo sapiens TEA domain factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR550FIL - 22955616 txt
CRISPRi NONO Homo sapiens NonO domain factors Yet undefined DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR039VEQ - 22955616 txt
CRISPRi NR2C2 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR808HQN - 22955616 txt
CRISPRi NR4A1 Homo sapiens Nuclear receptors with C4 zinc fingers Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR357LVC - 22955616 txt
CRISPRedit DROSHA Homo sapiens Others Unclassified Structure HepG2 Liver Cell line ENCODE ENCSR991XFO - - txt
CRISPRedit SYNCRIP Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR680OJB - - txt
CRISPRedit SRSF4 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR905NIK - - txt
CRISPRedit SRSF7 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR139LOF - - txt
CRISPRedit SRSF4 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR471INA - - txt
CRISPRedit CEBPZ Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR637EFF - - txt
CRISPRedit SRSF9 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR972AZD - 22955616 txt
CRISPRedit SRSF7 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR845MNM - - txt
CRISPRedit POLR2G Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR580TGX - - txt
CRISPRedit PTBP1 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR415DJT - - txt
CRISPRedit SAFB Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR336TYW - - txt
CRISPRedit RBM14 Homo sapiens Others Other Cofactors HepG2 Liver Cell line ENCODE ENCSR166MWM - - txt
CRISPRedit HNRNPH1 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR354RSR - - txt
CRISPR ANXA2 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR862BCF - 22955616 txt
CRISPR PAN2 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR874MHJ - 22955616 txt
CRISPR MYCN Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains CHP-134 Neuroblastoma Cell line GEO GSE121529 GPL17077 30584073 txt
CRISPR XRCC5 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR276GMG - 22955616 txt
CRISPR RPS3 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR865UKM - 22955616 txt
CRISPR PAN2 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR204OEJ - 22955616 txt
CRISPR ZNF574 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HepG2 Liver Cell line ENCODE ENCSR821GQN - 22955616 txt
CRISPR E4F1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HepG2 Liver Cell line ENCODE ENCSR308EYT - 22955616 txt
CRISPR CTCF Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains HepG2 Liver Cell line ENCODE ENCSR871XPX - 22955616 txt
CRISPR CIZ1 Homo sapiens Others TcoF-DB_
TF
HepG2 Liver Cell line ENCODE ENCSR749QMU - 22955616 txt
CRISPR ARID2 Homo sapiens ARID domain factors Helix-turn-helix domains JHH4 Liver Cell line GEO GSE144021 GPL570 32113157 txt
CRISPR E4F1 Homo sapiens Zinc-coordinating DNA-binding domains C2H2 zinc finger factors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR916PCG - 22955616 txt
CRISPR FUBP3 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR619GGE - 22955616 txt
CRISPR SRPK2 Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR929EIP - 22955616 txt
CRISPR EIF2AK2 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR628AFF - 22955616 txt
CRISPR DDX59 Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR126UCL - 22955616 txt
CRISPR HIC1 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains PC3 Prostate Cell line GEO GSE141642 GPL21185 N txt
CRISPR APTX Homo sapiens Others ENCODE_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR049HPU - 22955616 txt
CRISPR NFX1 Homo sapiens NFX1-type putative zinc finger factors Zinc-coordinating DNA-binding domains HepG2 Liver Cell line ENCODE ENCSR548ORV - 22955616 txt
CRISPR YBX1 Homo sapiens Cold-shock domain factors beta-Barrel DNA-binding domains HepG2 Liver Cell line ENCODE ENCSR548OTL - 22955616 txt
CRISPR YBX1 Homo sapiens Cold-shock domain factors beta-Barrel DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR659UXO - 22955616 txt
CRISPR PRRX1 Homo sapiens Homeo domain factors Helix-turn-helix domains 691-MES Neuroblastoma Cell line GEO GSE97426 GPL570 30948783 txt
CRISPR SMAD5 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR649MBU - 22955616 txt
CRISPR SMAD4 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR965MSX - 22955616 txt
CRISPR SMAD2 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR016WTN - 22955616 txt
CRISPR SMAD5 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold HepG2 Liver Cell line ENCODE ENCSR383QYT - 22955616 txt
CRISPR SOX2 Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains TCam-2 Seminoma-like Tissue GEO GSE79065 GPL10558 27283990 txt
CRISPR MECP2 Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR665DMA - 22955616 txt
CRISPR CIZ1 Homo sapiens Others TcoF-DB_
TF
K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR765HSN - 22955616 txt
CRISPR SMAD4 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold HepG2 Liver Cell line ENCODE ENCSR700FWD - 22955616 txt
CRISPR SMAD2 Homo sapiens SMAD/NF-1 DNA-binding domain factors beta-Hairpin exposed by an alpha/beta-scaffold HepG2 Liver Cell line ENCODE ENCSR036ANR - 22955616 txt
CRISPR CIC Homo sapiens High-mobility group (HMG) domain factors Other all-alpha-helical DNA-binding domains HEK293a Embryo_
kidney
Cell line GEO GSE80359 GPL16686 28295365 txt
CRISPR CHCHD3 Homo sapiens Others Co-activator/repressors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR221MPE - 22955616 txt
CRISPR STAT3 Homo sapiens STAT domain factors Immunoglobulin fold hESC Embryo Stem cell GEO GSE132561 GPL13497 N txt
CRISPR ERN1 Homo sapiens Others Other Cofactors K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR026FEM - 22955616 txt
CRISPR APTX Homo sapiens Others ENCODE_
TF
HepG2 Liver Cell line ENCODE ENCSR731TJP - 22955616 txt
CRISPR CDC5L Homo sapiens Tryptophan cluster factors Helix-turn-helix domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR608EQY - 22955616 txt
CRISPR ZNF574 Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR064VKV - 22955616 txt
CRISPR CTCF Homo sapiens C2H2 zinc finger factors Zinc-coordinating DNA-binding domains K562 Haematopoietic_
and_lymphoid_
tissue
Cell line ENCODE ENCSR613LSQ - 22955616 txt
CRISPR MECP2 Homo sapiens Others TcoF-DB_
TF
HepG2 Liver Cell line ENCODE ENCSR266XKN - 22955616 txt
CRISPR ERN1 Homo sapiens Others Other Cofactors HepG2 Liver Cell line ENCODE ENCSR005UDT - 22955616 txt
CRISPR MYCN Homo sapiens Basic helix-loop-helix factors (bHLH) Basic domains CHP-134 Neuroblastoma Cell line GEO GSE121530 GPL17077 30584073 txt

Download Differentially Expressed Genes of All Datasets

Human Differential Expression of Genes: txt Mouse Differential Expression of Genes: txt

Download Promoter, SE and TE Information of Each Gene

Human Promoter: txt Mouse Promoter: txt
Human Super-Enhancer: txt Mouse Super-Enhancer: txt
Human Typical Enhancer: txt Mouse Typical Enhancer: txt
Human TF Motif: txt Mouse TF Motif: txt
Human TF ChIP-seq: txt Mouse TF ChIP-seq: txt