SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000139722
Gene: VPS37B Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:122865330-122896127 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077500407 chr12:122786120-122857188 Sample_02_0775 Pancreas EndoC-BH1_SE 407 30 1985 257 4 201 2196 CCDC62,HIP1R,DENR,VPS37B
SE_02_003300601 chr12:122812697-122847369 Sample_02_0033 Pancreas pancreatic-islets-F 601 4 932 138 2 79 492 HIP1R,CCDC62,VPS37B
SE_02_085701139 chr12:122819033-122853813 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1139 4 960 127 2 99 1137 CCDC62,HIP1R,VPS37B
SE_02_048101184 chr12:122822611-122863405 Sample_02_0481 Mammary gland MDA-MB231 1184 13 1275 146 1 204 3173 CCDC62,HIP1R,VPS37B
SE_02_118700654 chr12:122826066-122853712 Sample_02_1187 Brain GBM16 654 7 744 96 1 96 1101 CCDC62,HIP1R,VPS37B
SE_02_015800671 chr12:122830934-122861042 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 671 4 937 102 1 179 2543 HIP1R,VPS37B
SE_02_153700659 chr12:122831174-122853028 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 659 3 591 75 1 81 1008 HIP1R,VPS37B
SE_02_021600449 chr12:122831242-122863031 Sample_02_0216 Skin NHEK_scramble 449 7 1021 108 1 189 3020 HIP1R,VPS37B
SE_02_004700654 chr12:122834247-122848596 Sample_02_0047 Pancreatic endoderm IIDP/donor790 654 1 362 52 1 58 470 HIP1R,VPS37B
SE_02_003200384 chr12:122835927-122848842 Sample_02_0032 Pancreas pancreatic-islets-M 384 1 353 51 1 54 229 HIP1R,VPS37B
SE_02_100700026 chr12:122837811-122860998 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 26 14 789 83 1 147 2229 HIP1R,VPS37B
SE_02_121000268 chr12:122839866-122854106 Sample_02_1210 Brain GBM17 268 10 447 53 1 45 757 HIP1R,VPS37B
SE_02_100400048 chr12:122840832-122854920 Sample_02_1004 Brain Lateral temporal lobe_10T_Old 48 6 450 59 1 54 836 HIP1R,VPS37B
SE_02_101000018 chr12:122840835-122853776 Sample_02_1010 Brain Lateral temporal lobe_3T_AD 18 9 408 52 1 45 704 HIP1R,VPS37B
SE_02_101200011 chr12:122841311-122857289 Sample_02_1012 Brain Lateral temporal lobe_8T_AD 11 13 543 64 1 96 1400 HIP1R,VPS37B
SE_02_100200012 chr12:122841666-122853941 Sample_02_1002 Brain Lateral temporal lobe_18T_Young 12 3 385 49 1 40 726 HIP1R,VPS37B
SE_02_101400031 chr12:122841848-122860300 Sample_02_1014 Brain Lateral temporal lobe_7T_AD 31 15 655 64 1 105 2052 HIP1R,VPS37B
SE_02_079000031 chr12:122842516-122853856 Sample_02_0790 Brain DI28 31 5 357 43 0 28 704 HIP1R,VPS37B
SE_02_100100040 chr12:122842869-122850110 Sample_02_1001 Brain Lateral temporal lobe_17T_Young 40 4 225 32 0 17 361 HIP1R,VPS37B
SE_02_100300026 chr12:122843532-122856300 Sample_02_1003 Brain Lateral temporal lobe_19T_Young 26 9 436 46 0 58 1193 HIP1R,VPS37B
SE_02_035000468 chr12:122845426-122850416 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 468 1 159 19 0 15 451 HIP1R,VPS37B
SE_02_104600934 chr12:122905043-122969293 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 934 17 1524 100 3 154 2185 ABCB9,OGFOD2,VPS37B,MIR4304,ARL6IP4
SE_02_154100524 chr12:122916094-122952275 Sample_02_1541 Nasopharyngeal HNE1 524 11 865 61 1 102 1802 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_082700214 chr12:122918068-122949582 Sample_02_0827 Stomach normal gastric 214 6 741 54 1 93 1546 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_108000829 chr12:122921762-122964383 Sample_02_1080 Muscle JR1 shCtrl 829 14 1016 61 3 132 1945 ABCB9,OGFOD2,VPS37B,MIR4304,ARL6IP4
SE_02_122700599 chr12:122921885-122952458 Sample_02_1227 Bone marrow U266 599 12 745 49 1 98 1744 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_115600184 chr12:122924706-122952440 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 184 16 656 46 1 95 1701 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_078400549 chr12:122924807-122952462 Sample_02_0784 Blood OSU-CLL 549 9 652 45 1 95 1685 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_121900226 chr12:122925009-122952357 Sample_02_1219 Bone marrow H929 226 7 645 44 1 95 1672 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_036900624 chr12:122925011-122956402 Sample_02_0369 Skeletal muscle RD 624 4 742 48 2 96 1672 ABCB9,VPS37B,OGFOD2,ARL6IP4
SE_02_037900624 chr12:122925011-122956402 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 624 4 742 48 2 96 1672 ABCB9,VPS37B,OGFOD2,ARL6IP4
SE_02_037800358 chr12:122925914-122947999 Sample_02_0378 Skeletal muscle SCMC 358 3 517 38 1 74 1289 ABCB9,VPS37B,OGFOD2,ARL6IP4
SE_02_115700255 chr12:122925953-122952161 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 255 17 624 41 1 92 1672 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_107800276 chr12:122927239-122970345 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 276 13 1015 63 3 131 2055 ABCB9,OGFOD2,VPS37B,MIR4304,ARL6IP4
SE_02_074100832 chr12:122927514-122964514 Sample_02_0741 Muscle RH30 832 11 867 49 3 125 1873 ABCB9,OGFOD2,VPS37B,MIR4304,ARL6IP4
SE_02_151000579 chr12:122934047-122964786 Sample_02_1510 Lung H3122_LR_Pano 579 9 730 37 2 91 1264 ABCB9,OGFOD2,VPS37B,MIR4304,ARL6IP4
SE_02_120100246 chr12:122937531-122964300 Sample_02_1201 Brain GBM37 246 9 650 35 2 84 1149 ABCB9,OGFOD2,VPS37B,MIR4304,ARL6IP4
SE_02_035400779 chr12:122938856-122952610 Sample_02_0354 Colon Colo205 779 5 353 22 0 51 948 ABCB9,VPS37B,OGFOD2,ARL6IP4
SE_02_006800152 chr12:122940663-122964283 Sample_02_0068 Skin A375_DMSO 152 6 566 31 2 77 940 ABCB9,VPS37B,OGFOD2,MIR4304,ARL6IP4
SE_02_087300410 chr12:122940770-122951112 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 410 6 272 18 0 44 716 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_048101926 chr12:122940789-122952452 Sample_02_0481 Mammary gland MDA-MB231 1926 6 297 18 0 44 715 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_113600953 chr12:122941277-122964405 Sample_02_1136 Bone U2OS-anaphase/telophase 953 9 553 29 2 70 827 ABCB9,OGFOD2,VPS37B,MIR4304,ARL6IP4
SE_02_113701071 chr12:122941317-122952385 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1071 4 285 17 0 36 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_108500554 chr12:122941524-122952392 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 554 5 279 17 0 36 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_099100868 chr12:122941657-122952286 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 868 6 277 17 0 36 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_085800552 chr12:122941669-122952427 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 552 2 279 17 0 36 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_153700484 chr12:122941701-122952555 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 484 3 282 17 0 36 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_057101005 chr12:122941718-122951893 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 1005 7 265 17 0 36 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_111500269 chr12:122941724-122959090 Sample_02_1115 Liver HepG2 269 7 428 26 1 37 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_126800512 chr12:122941726-122952135 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 512 4 273 17 0 36 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_132200478 chr12:122941833-122952582 Sample_02_1322 Connective Tissue HT1080_WT 478 4 276 16 0 37 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_111300553 chr12:122941868-122959053 Sample_02_1113 Bone U2OS 553 10 421 25 1 37 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_143001010 chr12:122941905-122948165 Sample_02_1430 Blood Kasumi-3_mock-infected 1010 2 163 13 0 18 243 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_082600873 chr12:122942113-122968952 Sample_02_0826 Stomach gastric tumor 873 14 645 38 2 76 1009 ABCB9,OGFOD2,VPS37B,MIR4304,ARL6IP4
SE_02_058501012 chr12:122942163-122959566 Sample_02_0585 Umbilical vein HUVEC 0hour 1012 8 426 25 1 37 640 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_083101079 chr12:122942260-122960098 Sample_02_0831 Umblical vein HUVECs_TNF0min 1079 10 433 25 1 56 755 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_147100712 chr12:122942483-122959351 Sample_02_1471 Blood Outgrowth Endothelia BOEC 712 3 406 21 1 37 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_132000667 chr12:122942789-122952458 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 667 6 240 12 0 36 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_062000685 chr12:122942860-122958921 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 685 7 386 21 1 37 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_151900675 chr12:122942930-122959207 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 675 14 392 21 1 37 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_151800554 chr12:122942939-122959241 Sample_02_1518 Umbilical vein HUVEC_Scr 554 11 392 21 1 37 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_079500381 chr12:122942942-122950480 Sample_02_0795 Brain 1953 381 3 191 11 0 36 553 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_152000635 chr12:122942951-122959170 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 635 12 391 21 1 37 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_035900891 chr12:122942977-122952438 Sample_02_0359 Colon Colo741 891 1 238 12 0 36 626 ABCB9,VPS37B,OGFOD2,ARL6IP4
SE_02_057201228 chr12:122943265-122951968 Sample_02_0572 Brain LN229_1_mM_glucose 1228 5 214 11 0 36 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
SE_02_113400539 chr12:122943668-122959104 Sample_02_1134 Bone U2OS-interphase 539 5 367 18 1 37 626 ABCB9,OGFOD2,VPS37B,ARL6IP4
Genomic distribution of SEs associated with VPS37B
Genome Browser

The strength of the tissue affected by the gene

Expression of VPS37B

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)