SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000145040
Gene: UCN2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:48561718-48563781 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_143500063 chr3:48458318-48515760 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 63 10 1312 112 1 110 2561 SHISA5,ATRIP,TREX1,PLXNB1,TMA7,UCN2,CCDC51,PFKFB4,MIR6823
SE_02_143400056 chr3:48459795-48516286 Sample_02_1434 Trophoblast trophoblast stem cells 56 7 1283 107 1 108 2480 SHISA5,ATRIP,TREX1,PLXNB1,TMA7,UCN2,CCDC51,PFKFB4,MIR6823
SE_02_124800022 chr3:48463079-48519349 Sample_02_1248 Bladder RT4 22 15 1295 116 1 96 2564 SHISA5,ATRIP,TREX1,PFKFB4,PLXNB1,TMA7,UCN2,CCDC51,MIR6823
SE_02_138500194 chr3:48463105-48525813 Sample_02_1385 Other iPSCs 194 14 1442 125 1 110 3083 SHISA5,ATRIP,TREX1,PFKFB4,PLXNB1,TMA7,UCN2,CCDC51,MIR6823
SE_02_104801412 chr3:48507720-48525608 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1412 11 422 35 0 17 828 PFKFB4,SHISA5,UCN2,MIR6823,TREX1
SE_02_103900487 chr3:48514426-48539527 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 487 5 574 38 1 45 1236 PFKFB4,MIR711,SHISA5,UCN2,MIR6823,TREX1
SE_00_005501186 chr3:48527212-48561146 Sample_00_0055 Spleen spleen 34y 1186 14 745 45 1 101 1084 PFKFB4,MIR6823,UCN2,MIR711,SHISA5,UQCRC1,COL7A1,TMEM89,TREX1
SE_02_129900516 chr3:48546358-48561555 Sample_02_1299 Liver liver 516 5 343 22 0 62 583 PFKFB4,MIR6823,UCN2,MIR711,SHISA5,UQCRC1,COL7A1
SE_02_021500415 chr3:48550106-48560343 Sample_02_0215 Skin NHEK_siGRHL3 415 2 229 12 0 44 304 PFKFB4,COL7A1,UCN2,MIR711,UQCRC1,SHISA5
SE_02_077501461 chr3:48550772-48560611 Sample_02_0775 Pancreas EndoC-BH1_SE 1461 5 221 12 0 46 244 PFKFB4,UCN2,MIR711,SHISA5,MIR6823,UQCRC1,COL7A1
SE_02_021600872 chr3:48567513-48585253 Sample_02_0216 Skin NHEK_scramble 872 4 501 14 0 229 4049 MIR711,COL7A1,UCN2,PFKFB4,TMEM89,UQCRC1,SLC26A6
SE_02_039600279 chr3:48581974-48602051 Sample_02_0396 Skin NHEK-D 279 1 574 18 2 247 3442 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,MIR711,SLC26A6
SE_02_076201987 chr3:48583279-48595440 Sample_02_0762 Podocyte podocyte_CTL 1987 1 363 11 1 161 2588 COL7A1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,UQCRC1,MIR4793,PFKFB4,TMEM89
SE_04_001000722 chr3:48583452-48600195 Sample_04_0010 Lung A549 TGFb 722 3 478 16 2 220 2816 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_01_006100084 chr3:48585666-48604390 Sample_01_0061 Prostate RWPE1 84 4 523 16 2 219 2690 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,MIR711,SLC26A6
SE_02_005600452 chr3:48585829-48601968 Sample_02_0056 Mammary gland HMEC 452 4 457 14 2 208 2499 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,MIR711,SLC26A6
SE_02_050500678 chr3:48586619-48607812 Sample_02_0505 Esophagus KYSE70_1 678 11 593 21 2 218 2669 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_051600678 chr3:48586619-48607812 Sample_02_0516 Esophagus KYSE70 678 10 593 21 2 218 2669 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_078000156 chr3:48587609-48615627 Sample_02_0780 Liver SMMC-7721 156 8 741 31 1 211 2666 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,MIR4793,PFKFB4,TMEM89
SE_02_076300880 chr3:48588808-48600051 Sample_02_0763 Podocyte podocyte_DEX 880 1 289 10 1 132 1543 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_064800733 chr3:48589367-48600202 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 733 2 275 10 1 133 1452 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_048000608 chr3:48589471-48600424 Sample_02_0480 Gingival epithelial HGEP 608 6 277 10 1 133 1468 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_079500167 chr3:48590165-48600152 Sample_02_0795 Brain 1953 167 3 253 9 1 122 1279 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_154100243 chr3:48590173-48616515 Sample_02_1541 Nasopharyngeal HNE1 243 8 675 33 1 182 2103 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,MIR4793,PFKFB4,TMEM89
SE_02_051700893 chr3:48590305-48606147 Sample_02_0517 Esophagus TE5 893 8 408 13 1 167 1871 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_006300480 chr3:48591073-48614965 Sample_02_0063 Skin Keratinocytes 480 3 611 23 1 174 1929 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,CELSR3,MIR711,SLC26A6
SE_02_114800507 chr3:48592084-48599812 Sample_02_1148 Kidney WT 9-12_control_vehicle 507 2 190 6 1 106 838 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_088600934 chr3:48592085-48600115 Sample_02_0886 Skin foreskin_ p63KLF4 934 1 199 6 1 109 917 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_137600504 chr3:48592205-48600803 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 504 1 218 6 1 108 1010 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_047900529 chr3:48592227-48615079 Sample_02_0479 Head and neck SCC25 529 9 580 22 1 164 1714 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,MIR4793,PFKFB4,TMEM89
SE_02_107300659 chr3:48592278-48600154 Sample_02_1073 Keratinocyte keratinocytes stem cell 659 2 193 6 1 103 873 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_137500464 chr3:48592592-48600227 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 464 1 193 6 1 94 815 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_074701124 chr3:48592744-48606651 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 1124 6 360 12 1 136 1390 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_112000490 chr3:48592761-48599929 Sample_02_1120 Neonatal foreskin keratinocytes_CTR 490 5 176 6 1 82 709 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_102600393 chr3:48592804-48600438 Sample_02_1026 Esophagus KYSE200 393 3 191 6 1 87 807 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_153900591 chr3:48592893-48600848 Sample_02_1539 Nasopharyngeal C666-1 591 3 204 6 1 92 862 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_064601065 chr3:48593083-48599918 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1065 2 165 6 1 78 633 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_112100299 chr3:48593083-48606572 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 299 7 345 12 1 132 1314 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_072700212 chr3:48593110-48619051 Sample_02_0727 Fetal lung IMR90_Etoposide 212 7 661 34 1 141 1515 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,MIR4793,PFKFB4,TMEM89,NCKIPSD
SE_02_026200555 chr3:48593291-48620870 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 555 3 702 34 1 139 1536 UQCRC1,COL7A1,TMEM89,UCN2,PFKFB4,CELSR3,MIR711,SLC26A6
SE_02_015800688 chr3:48593455-48600334 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 688 1 171 6 1 69 657 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,MIR711,SLC26A6
SE_02_065200374 chr3:48593622-48600222 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 374 1 161 6 1 68 599 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_005400661 chr3:48593668-48615032 Sample_02_0054 Lung IMR-90_DMSO_1 661 2 540 22 1 128 1402 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,CELSR3,MIR711,SLC26A6
SE_02_059600314 chr3:48593680-48619271 Sample_02_0596 Mammary gland MCF10A_ DMSO 314 4 646 34 1 128 1400 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,MIR4793,PFKFB4,TMEM89
SE_02_063600544 chr3:48593691-48600378 Sample_02_0636 Skin BJ5ta 544 1 163 6 1 68 613 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_005500274 chr3:48593715-48619373 Sample_02_0055 Lung IMR-90_Nutlin-3a 274 3 648 34 1 128 1388 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,CELSR3,MIR711,SLC26A6
SE_02_050300440 chr3:48593717-48600618 Sample_02_0503 Esophagus KYSE140_1 440 2 175 6 1 70 650 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_051500443 chr3:48593717-48600625 Sample_02_0515 Esophagus KYSE140 443 2 175 6 1 70 651 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_113200621 chr3:48593719-48617038 Sample_02_1132 Pancreas KLM1 wt 621 10 598 32 1 128 1388 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,MIR4793,PFKFB4,TMEM89
SE_02_102500968 chr3:48593931-48600338 Sample_02_1025 Esophagus KYSE150 968 1 156 6 1 68 558 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_114900438 chr3:48594001-48600198 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 438 1 153 6 1 68 533 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_029400888 chr3:48594027-48614915 Sample_02_0294 Pancreatic L3-6_DMSO 888 3 532 22 1 128 1352 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,CELSR3,MIR711,SLC26A6
SE_02_044800828 chr3:48594102-48599779 Sample_02_0448 Bone MNNG 828 1 138 6 1 63 439 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_060601150 chr3:48594124-48600057 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 1150 1 146 6 1 64 504 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_063700753 chr3:48594151-48600286 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 753 2 153 6 1 68 550 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_086900587 chr3:48594185-48600826 Sample_02_0869 Fibroblast VH10_NO_UV 587 1 170 6 1 71 638 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_02_085800593 chr3:48594515-48612436 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 593 2 481 21 1 126 1277 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,MIR4793,PFKFB4,TMEM89
SE_00_003401056 chr3:48594901-48602152 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 1056 1 187 7 1 86 671 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,MIR711,SLC26A6
SE_02_053000457 chr3:48595699-48620231 Sample_02_0530 Mammary gland MCF10A 457 13 624 33 1 115 1096 UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,COL7A1,MIR4793,PFKFB4,TMEM89
SE_00_005300973 chr3:48595781-48599662 Sample_00_0053 Embryo trophoblast cell originated from H1 973 3 96 5 0 48 164 UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,COL7A1,MIR4793,PFKFB4,TMEM89
SE_02_064701137 chr3:48595796-48600394 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1137 1 117 5 1 54 316 UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,COL7A1,MIR4793,PFKFB4,TMEM89
SE_00_004601010 chr3:48596472-48604972 Sample_00_0046 Heart right ventricle_34y 1010 6 220 7 1 86 809 UQCRC1,UCN2,MIR711,MIR6824,MIR6823,SLC26A6,COL7A1,MIR4793,PFKFB4,TMEM89
SE_01_002900710 chr3:48596881-48600054 Sample_01_0029 Lung fibroblast-of-lung 710 1 82 3 1 43 247 UQCRC1,UCN2,PFKFB4,TMEM89,COL7A1,MIR711,SLC26A6
SE_02_046600889 chr3:48597058-48631198 Sample_02_0466 Adipose visceral adipocytes 889 10 908 48 3 160 2417 SLC26A6,UQCRC1,TMEM89,UCN2,MIR711,MIR6824,CELSR3,MIR6823,CELSR3-AS1,COL7A1,MIR4793,PFKFB4
SE_02_072500143 chr3:48597072-48618898 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 143 10 564 31 1 107 1096 UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,COL7A1,MIR4793,PFKFB4,TMEM89
Genomic distribution of SEs associated with UCN2
Genome Browser

The strength of the tissue affected by the gene

Expression of UCN2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)