SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000130560
Gene: UBAC1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr9:135932969-135961373 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_139200310 chr9:135847599-135929499 Sample_02_1392 Peripheral blood Mac-2A_ALK- 310 18 2541 162 1 101 547 CAMSAP1,UBAC1
SE_02_104901235 chr9:135875229-135911906 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1235 22 1101 68 0 53 352 CAMSAP1,UBAC1
SE_02_105800388 chr9:135963534-135994324 Sample_02_1058 Bone A673_SA2 Rescue 388 19 1122 39 0 60 0 UBAC1
SE_02_087400274 chr9:135965334-136005293 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 274 8 1428 50 1 65 0 UBAC1
SE_02_105900580 chr9:135965530-135994778 Sample_02_1059 Bone A673_WT 580 9 1061 37 0 60 0 UBAC1
SE_02_147300587 chr9:135965530-135994778 Sample_02_1473 Bone A-673 587 9 1061 37 0 60 0 UBAC1
SE_02_027500157 chr9:135966100-136018754 Sample_02_0275 Retina FW14 157 11 1914 73 1 206 1506 NACC2,UBAC1
SE_02_121300498 chr9:135966599-136025578 Sample_02_1213 Brain GBM31 498 20 2129 81 1 217 1506 NACC2,UBAC1
SE_02_128001362 chr9:135967073-135993959 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1362 8 997 37 0 60 0 UBAC1
SE_02_096200521 chr9:135967107-136003927 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 521 11 1328 50 1 65 0 UBAC1
SE_02_101300179 chr9:135967154-136025332 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 179 15 2110 80 1 217 1506 NACC2,UBAC1
SE_02_120300877 chr9:135967261-135993584 Sample_02_1203 Brain NB1 877 8 979 36 0 59 0 UBAC1
SE_02_120200730 chr9:135967309-135994217 Sample_02_1202 Brain GBM38 730 9 997 36 0 60 0 UBAC1
SE_02_095700087 chr9:135967350-136025366 Sample_02_0957 Brain 429_Tumor_H3.3K27WT 87 14 2106 79 1 217 1506 NACC2,UBAC1
SE_02_118100502 chr9:135967408-135993714 Sample_02_1181 Brain GBM10 502 6 978 36 0 59 0 UBAC1
SE_02_120400612 chr9:135967436-135993671 Sample_02_1204 Brain NB2 612 9 976 36 0 59 0 UBAC1
SE_00_002200229 chr9:135967829-136029155 Sample_00_0022 Lung lung_30y 229 11 2191 86 1 217 1506 NACC2,UBAC1
SE_02_139000348 chr9:135967913-135978317 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 348 2 376 7 0 32 0 UBAC1
SE_02_118400422 chr9:135968212-135994495 Sample_02_1184 Brain GBM13 422 9 964 36 0 60 0 UBAC1
SE_02_119600682 chr9:135968316-136025447 Sample_02_1196 Brain GBM32 682 15 2062 79 1 217 1506 NACC2,UBAC1
SE_02_119100698 chr9:135968442-136025321 Sample_02_1191 Brain GBM25 698 17 2057 79 1 217 1506 NACC2,UBAC1
SE_02_119300802 chr9:135968564-136032213 Sample_02_1193 Brain GBM27 802 15 2277 89 2 216 1506 NACC2,UBAC1
SE_02_116100207 chr9:135968593-136015689 Sample_02_1161 Embryo H1_shZNF587 207 8 1713 67 1 182 1408 NACC2,UBAC1
SE_02_117400421 chr9:135968610-136025316 Sample_02_1174 Brain GBM02 421 21 2052 79 1 216 1506 NACC2,UBAC1
SE_02_061300357 chr9:135969017-136033028 Sample_02_0613 Liposarcoma MLPS_T1 357 15 2291 90 2 216 1506 NACC2,UBAC1
SE_02_097700134 chr9:135969051-136025489 Sample_02_0977 Brain 2089_H3.3K27WT 134 17 2042 79 1 216 1506 NACC2,UBAC1
SE_02_103900405 chr9:135970474-135992836 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 405 6 827 36 0 36 0 UBAC1
SE_02_110400223 chr9:135971966-136025263 Sample_02_1104 Brain NB-69 223 16 1931 77 1 196 1506 NACC2,UBAC1
SE_02_061100201 chr9:135976488-136058439 Sample_02_0611 Liposarcoma DDLPS_T1 201 22 2264 108 3 287 1852 NACC2,UBAC1
SE_00_002500933 chr9:135976521-136013192 Sample_00_0025 Muscle of leg muscle-of-leg 933 7 1322 53 1 136 1212 NACC2,UBAC1
SE_02_117900494 chr9:135976692-135993700 Sample_02_1179 Brain GBM08 494 7 632 29 0 27 0 UBAC1
SE_02_001900406 chr9:135976716-136012747 Sample_02_0019 Embryo Neural crest cells 406 14 1300 52 1 117 1167 NACC2,UBAC1
SE_02_107800570 chr9:135976728-136001567 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 570 14 895 37 0 33 0 UBAC1
SE_02_096600246 chr9:135976791-136025085 Sample_02_0966 Brain H3.3K27M_JN29-BS3 246 14 1738 70 1 185 1506 NACC2,UBAC1
SE_02_117700559 chr9:135976901-136024836 Sample_02_1177 Brain GBM05 559 10 1721 70 1 185 1506 NACC2,UBAC1
SE_02_093200046 chr9:135977150-136019173 Sample_02_0932 Embryo H9 WT_1 46 19 1528 65 1 185 1506 NACC2,UBAC1
SE_02_118700507 chr9:135977200-136024468 Sample_02_1187 Brain GBM16 507 14 1695 70 1 185 1506 NACC2,UBAC1
SE_02_121200643 chr9:135978158-135994298 Sample_02_1212 Brain GBM30 643 4 599 29 0 28 0 UBAC1
SE_02_138400045 chr9:135978655-136019832 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 45 20 1510 67 1 185 1506 NACC2,UBAC1
SE_02_120000386 chr9:135978688-136025115 Sample_02_1200 Brain GBM36 386 13 1681 70 1 185 1506 NACC2,UBAC1
SE_02_078500331 chr9:135978758-135993635 Sample_02_0785 Brain 2097 331 8 565 29 0 27 0 UBAC1
SE_02_119200708 chr9:135978769-136024895 Sample_02_1192 Brain GBM26 708 15 1674 70 1 185 1506 NACC2,UBAC1
SE_00_002600676 chr9:135978771-136013069 Sample_00_0026 Muscle of trunk muscle-of-trunk 676 6 1246 52 1 136 1171 NACC2,UBAC1
SE_02_097100793 chr9:135978811-136024463 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 793 10 1656 70 1 185 1506 NACC2,UBAC1
SE_02_101500483 chr9:135978898-136019490 Sample_02_1015 Embryo H9_ Undifferentiated 483 15 1496 65 1 185 1506 NACC2,UBAC1
SE_02_104800900 chr9:135978916-136004059 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 900 10 910 42 1 33 0 UBAC1
SE_02_110700508 chr9:135978947-136024616 Sample_02_1107 Brain SK-N-AS 508 26 1654 70 1 185 1506 NACC2,UBAC1
SE_02_124400465 chr9:135979006-136003701 Sample_02_1244 Brain KCNR_ATRA 465 8 893 42 1 33 0 UBAC1
SE_02_142000390 chr9:135979188-135994891 Sample_02_1420 Brain DIPG007 390 4 584 30 0 28 0 UBAC1
SE_02_087300427 chr9:135979251-136003829 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 427 5 888 42 1 33 0 UBAC1
SE_02_087100168 chr9:135979360-135998788 Sample_02_0871 Colon HCT116_GLIS2.2-DMSO 168 3 722 35 0 33 0 UBAC1
SE_02_087200460 chr9:135980533-136011270 Sample_02_0872 Colon HCT116_siCtrl-5FU 460 10 1115 49 1 82 969 NACC2,UBAC1
SE_01_004700048 chr9:135980793-136018776 Sample_01_0047 Embryo mid-neurogenesis-radial-glial-cells 48 5 1399 63 1 174 1506 NACC2,UBAC1
SE_02_082200111 chr9:135984288-136022964 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 111 8 1397 61 1 172 1506 NACC2,UBAC1
SE_02_082100077 chr9:135984314-136032901 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 77 8 1727 74 2 172 1506 NACC2,UBAC1
SE_02_082300106 chr9:135984396-136022670 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 106 8 1384 61 1 172 1506 NACC2,UBAC1
SE_02_093400062 chr9:135985867-136012726 Sample_02_0934 Embryo H7-WT 62 17 967 35 1 104 1167 NACC2,UBAC1
SE_02_021600972 chr9:135985929-136007792 Sample_02_0216 Skin NHEK_scramble 972 5 771 26 1 34 128 UBAC1
SE_02_116000330 chr9:135986014-136018466 Sample_02_1160 Embryo H1_shLuc 330 9 1186 46 1 160 1506 NACC2,UBAC1
SE_02_093100213 chr9:135986157-136017829 Sample_02_0931 Embryo H9 UTXKO 213 15 1147 46 1 158 1506 NACC2,UBAC1
SE_02_027700292 chr9:135987571-136018924 Sample_02_0277 Retina FW18 292 4 1146 40 1 168 1506 NACC2,UBAC1
SE_02_027600381 chr9:135988901-136013041 Sample_02_0276 Retina FW15 381 4 859 26 1 123 1169 NACC2,UBAC1
SE_02_093300084 chr9:135989231-136012319 Sample_02_0933 Embryo H7 UTXKO 84 12 818 25 1 100 1167 NACC2,UBAC1
SE_01_009000557 chr9:135989533-136015950 Sample_01_0090 Lung upper-lobe-of-left-lung 557 6 949 32 1 134 1408 NACC2,UBAC1
SE_02_155900516 chr9:135989888-136013071 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 516 7 814 24 1 119 1171 NACC2,UBAC1
SE_02_155300414 chr9:135989909-136033223 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 414 17 1514 55 2 168 1506 NACC2,UBAC1
SE_01_010401058 chr9:135990580-136014908 Sample_01_0104 Lung upper lobe of left lung 1058 5 856 29 1 127 1408 NACC2,UBAC1
SE_02_095000797 chr9:135990677-136033133 Sample_02_0950 Umbilical vein HUVEC_WT 797 13 1480 55 2 161 1506 NACC2,UBAC1
SE_02_001500220 chr9:135990769-136014004 Sample_02_0015 Liver HepG2_shNS 220 5 819 29 1 126 1361 NACC2,UBAC1
SE_02_155400652 chr9:135990795-136034483 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 652 11 1491 55 2 161 1506 NACC2,UBAC1
SE_02_001700415 chr9:135990801-136019061 Sample_02_0017 Embryo H9_ESC 415 6 1017 37 1 160 1506 NACC2,UBAC1
SE_02_139000506 chr9:135990857-135995195 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 506 1 145 2 0 4 0 UBAC1
SE_02_124200491 chr9:135990923-136012939 Sample_02_1242 Skin UISO_virus_negative 491 5 775 24 1 108 1167 NACC2,UBAC1
SE_00_005100555 chr9:135990930-136025320 Sample_00_0051 Adrenal gland adrenal gland 30y 555 17 1224 44 1 161 1506 NACC2,UBAC1
SE_02_067900289 chr9:135990992-136011094 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 289 7 697 23 1 58 912 NACC2,UBAC1
SE_02_055800211 chr9:135991006-136012510 Sample_02_0558 iPSCs FX52 iPSCs mock 211 10 761 24 1 93 1167 NACC2,UBAC1
SE_02_072800582 chr9:135991007-136019328 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 582 13 1022 37 1 161 1506 NACC2,UBAC1
SE_02_072900466 chr9:135991009-136018122 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 466 7 981 37 1 147 1506 NACC2,UBAC1
SE_02_108000775 chr9:135991010-135994295 Sample_02_1080 Muscle JR1 shCtrl 775 2 115 1 0 4 0 UBAC1
SE_02_156500275 chr9:135991014-136012641 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 275 10 761 24 1 93 1167 NACC2,UBAC1
SE_02_064000748 chr9:135991024-136012243 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 748 7 743 24 1 93 1167 NACC2,UBAC1
SE_02_101600693 chr9:135991093-136012268 Sample_02_1016 Embryo H9_Mesendoderm_24h 693 6 742 24 1 93 1167 NACC2,UBAC1
SE_02_114500436 chr9:135991198-136029917 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 436 18 1344 51 1 161 1506 NACC2,UBAC1
SE_02_067800215 chr9:135991902-136011069 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 215 6 670 22 1 58 897 NACC2,UBAC1
SE_00_001000932 chr9:135992266-136011930 Sample_00_0010 Embryo endodermal-cell 932 5 701 23 1 87 1102 NACC2,UBAC1
SE_01_006000047 chr9:135992308-136016054 Sample_01_0060 Embryo radial-glial-cell 47 4 864 31 1 133 1408 NACC2,UBAC1
SE_02_083800246 chr9:135992339-136008618 Sample_02_0838 Embryo hNPCs_WT 246 5 573 16 1 36 297 NACC2,UBAC1
SE_02_055900652 chr9:135992350-136011836 Sample_02_0559 iPSCs FX52 iPSCs dC-T 652 6 695 23 1 81 1079 NACC2,UBAC1
SE_02_068100314 chr9:135992530-136005939 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 314 7 465 13 1 10 0 UBAC1
SE_02_132500547 chr9:135992584-136016698 Sample_02_1325 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M_WT 547 6 875 31 1 147 1506 NACC2,UBAC1
SE_02_151800556 chr9:136007578-136012875 Sample_02_1518 Umbilical vein HUVEC_Scr 556 3 209 8 0 71 1055 NACC2,UBAC1
SE_02_151900747 chr9:136007716-136032093 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 747 7 871 38 0 138 1382 NACC2,UBAC1
SE_02_152000587 chr9:136007761-136032077 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 587 7 867 38 0 138 1378 NACC2,UBAC1
SE_02_103602758 chr9:136008626-136033082 Sample_02_1036 Mammary gland HCC70_XY018 2758 11 864 38 1 120 1202 NACC2,UBAC1
SE_02_026900357 chr9:136009600-136010295 Sample_02_0269 Kidney HK-2 357 1 22 3 0 0 169 UBAC1
Genomic distribution of SEs associated with UBAC1
Genome Browser

The strength of the tissue affected by the gene

Expression of UBAC1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)