SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000078900
Gene: TP73 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:3652516-3736201 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_110600083 chr1:3457365-3611566 Sample_02_1106 Brain NGP 83 98 6135 237 7 200 7179 MEGF6,MIR551A,ARHGEF16,TP73,WRAP73,TPRG1L
SE_02_115100188 chr1:3520911-3618919 Sample_02_1151 Mammary gland MCF-7_UNTR 188 50 3886 152 2 38 1081 MEGF6,MIR551A,TP73,TPRG1L,WRAP73
SE_02_138400064 chr1:3538464-3610041 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 64 27 2944 95 2 3 508 MEGF6,MIR551A,TP73,TPRG1L,WRAP73
SE_02_027500114 chr1:3564232-3633139 Sample_02_0275 Retina FW14 114 11 2686 165 2 0 1731 TPRG1L,MEGF6,WDR8,TP73,MIR551A
SE_02_104700255 chr1:3565479-3646916 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 255 36 3122 197 2 7 2578 TPRG1L,MEGF6,WRAP73,TP73,MIR551A
SE_02_027700446 chr1:3566488-3612671 Sample_02_0277 Retina FW18 446 6 1899 72 1 0 598 MEGF6,TP73,MIR551A,WDR8,TPRG1L
SE_02_101500543 chr1:3577776-3618406 Sample_02_1015 Embryo H9_ Undifferentiated 543 10 1672 83 1 0 598 MEGF6,TP73,TPRG1L,MIR551A,WRAP73
SE_02_101701107 chr1:3580694-3614425 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1107 6 1391 61 1 0 467 MEGF6,TP73,TPRG1L,MIR551A,WRAP73
SE_02_095001111 chr1:3581312-3620466 Sample_02_0950 Umbilical vein HUVEC_WT 1111 19 1577 93 1 0 467 MEGF6,TP73,TPRG1L,MIR551A,WRAP73
SE_02_102900388 chr1:3582097-3623190 Sample_02_1029 Colon HCT116 388 25 1636 107 1 0 467 MEGF6,TP73,TPRG1L,MIR551A,WRAP73
SE_02_087400241 chr1:3583340-3609466 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 241 8 1082 45 1 0 249 MEGF6,TP73,TPRG1L,MIR551A,WRAP73
SE_02_004000505 chr1:3586498-3616174 Sample_02_0040 Embryo PFG 505 7 1191 71 1 0 467 MEGF6,TP73,MIR551A,WDR8,TPRG1L
SE_02_083400693 chr1:3587738-3619485 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 693 9 1252 86 1 0 467 MEGF6,TP73,TPRG1L,MIR551A,WRAP73
SE_02_083600633 chr1:3587820-3619529 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 633 9 1249 87 1 0 467 MEGF6,TP73,TPRG1L,MIR551A,WRAP73
SE_02_083500651 chr1:3587831-3612160 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 651 5 965 56 1 0 467 MEGF6,TP73,TPRG1L,MIR551A,WRAP73
SE_02_083700582 chr1:3587863-3612172 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 582 9 965 56 1 0 467 MEGF6,TP73,TPRG1L,MIR551A,WRAP73
SE_02_083300982 chr1:3587995-3612112 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 982 8 954 55 1 0 467 MEGF6,TP73,TPRG1L,MIR551A,WRAP73
SE_02_101600860 chr1:3589168-3619015 Sample_02_1016 Embryo H9_Mesendoderm_24h 860 8 1196 85 1 0 467 MEGF6,TP73,TPRG1L,MIR551A,WRAP73
SE_01_004700155 chr1:3589486-3611608 Sample_01_0047 Embryo mid-neurogenesis-radial-glial-cells 155 3 890 50 1 0 428 MEGF6,TP73,MIR551A,WDR8,TPRG1L
SE_02_001700727 chr1:3589824-3614423 Sample_02_0017 Embryo H9_ESC 727 5 999 59 1 0 467 MEGF6,TP73,MIR551A,WDR8,TPRG1L
SE_02_052500745 chr1:3611778-3619052 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 745 4 283 33 0 0 0 TP73,TPRG1L,MEGF6,WRAP73
SE_02_004500942 chr1:3612594-3615886 Sample_02_0045 Embryo endodermal CyT49_ES_D7 942 2 134 9 0 0 0 TP73,MEGF6,WDR8,TPRG1L
SE_02_104901770 chr1:3613806-3632206 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1770 16 620 83 1 0 957 TPRG1L,WRAP73,TP73,MEGF6
SE_02_104801226 chr1:3618802-3646912 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1226 5 952 100 1 7 1980 TPRG1L,WRAP73,TP73,MEGF6
SE_02_110600023 chr1:3631416-3744961 Sample_02_1106 Brain NGP 23 32 4117 239 9 325 5134 TP73-AS1,TP73,WRAP73,CCDC27,SMIM1,MEGF6,TPRG1L
SE_02_142900820 chr1:3648083-3678937 Sample_02_1429 Blood GM12878_WT 820 9 1064 71 4 57 281 WRAP73,TP73,MEGF6,TPRG1L,CCDC27,C1orf174
SE_02_032100090 chr1:3649384-3679728 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 90 3 1068 70 4 57 281 WDR8,TP73,MEGF6,TPRG1L
SE_02_032000170 chr1:3649437-3679405 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 170 3 1056 70 4 57 281 WDR8,TP73,MEGF6,TPRG1L
SE_02_078400313 chr1:3650501-3680044 Sample_02_0784 Blood OSU-CLL 313 10 1028 68 4 51 142 TP73,MEGF6,TPRG1L,WRAP73
SE_02_107500116 chr1:3650506-3688623 Sample_02_1075 Lymphoma BC-3 116 8 1345 85 4 79 375 TP73,MEGF6,TPRG1L,WRAP73
SE_02_139200138 chr1:3651156-3689878 Sample_02_1392 Peripheral blood Mac-2A_ALK- 138 9 1387 86 4 78 375 TP73,MEGF6,TPRG1L,WRAP73
SE_02_138700261 chr1:3651330-3688445 Sample_02_1387 Peripheral blood Mac-1_ALK- 261 13 1317 84 4 78 375 TP73,MEGF6,TPRG1L,WRAP73
SE_02_107400142 chr1:3651656-3681156 Sample_02_1074 Lymphoma BC-1 142 11 1037 68 4 48 142 TP73,MEGF6,TPRG1L,WRAP73
SE_02_138900375 chr1:3651676-3678877 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 375 4 958 66 4 48 142 TP73,MEGF6,TPRG1L,WRAP73
SE_02_123800007 chr1:3651688-3722342 Sample_02_1238 Skin MS1_virus_positive 7 20 2599 130 6 232 1071 TP73,CCDC27,TP73-AS1,MEGF6,WRAP73,TPRG1L,SMIM1,DFFB,ARHGEF16,CEP104,LRRC47,C1orf174
SE_02_123900175 chr1:3652007-3693321 Sample_02_1239 Skin Waga_virus_positive 175 14 1504 91 4 85 532 TP73,MEGF6,TPRG1L,WRAP73
SE_02_110800165 chr1:3654319-3735917 Sample_02_1108 Brain SK-N-BE_2_-C 165 31 3004 167 9 295 2748 TP73,CCDC27,SMIM1,TP73-AS1,MEGF6,WRAP73,TPRG1L
SE_02_115600110 chr1:3654490-3678945 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 110 15 869 64 4 40 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_110500144 chr1:3654641-3741092 Sample_02_1105 Brain NBL-S 144 33 3184 174 9 298 3459 TP73,TP73-AS1,CCDC27,SMIM1,MEGF6,WRAP73,TPRG1L
SE_02_139100220 chr1:3654661-3689643 Sample_02_1391 Peripheral blood FE-PD_ALK- 220 4 1269 83 4 68 233 TP73,MEGF6,TPRG1L,WRAP73
SE_02_078200580 chr1:3655012-3679635 Sample_02_0782 Blood MEC1 580 6 885 63 4 28 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_068600008 chr1:3655091-3735841 Sample_02_0686 Lung NCI-H128_no infection 8 40 2970 166 9 283 2726 TP73,CCDC27,SMIM1,TP73-AS1,MEGF6,WRAP73,TPRG1L
SE_02_122500498 chr1:3655342-3681504 Sample_02_1225 Bone marrow RAJI 498 10 924 65 4 35 0 TP73,MEGF6,TPRG1L,WRAP73,C1orf174
SE_02_073300273 chr1:3655551-3689376 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 273 14 1221 81 4 56 233 TP73,MEGF6,TPRG1L,WRAP73
SE_02_028800647 chr1:3655577-3678513 Sample_02_0288 Tonsil CB5_H3K27Ac 647 5 807 62 4 28 0 TP73,WDR8,MEGF6,TPRG1L
SE_02_072800456 chr1:3655658-3688517 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 456 11 1176 78 4 56 233 TP73,MEGF6,TPRG1L,WRAP73
SE_02_122400691 chr1:3655718-3677635 Sample_02_1224 Bone marrow normal plasma cell 691 11 774 58 4 28 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_072900266 chr1:3655718-3688465 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 266 9 1170 78 4 56 233 TP73,MEGF6,TPRG1L,WRAP73
SE_02_073000468 chr1:3656188-3679107 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 468 4 807 60 4 28 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_115700126 chr1:3656193-3679013 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 126 18 805 60 4 28 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_073100410 chr1:3656212-3679301 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 410 6 817 59 4 28 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_073200380 chr1:3656249-3679365 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 380 6 820 59 4 28 0 TP73,MEGF6,TPRG1L,WRAP73
SE_02_150000686 chr1:3657858-3719804 Sample_02_1500 Brain KELLY_untreat 686 16 2289 115 6 196 803 TP73,CCDC27,TP73-AS1,MEGF6,WRAP73,TPRG1L
SE_02_046200029 chr1:3657948-3735858 Sample_02_0462 Lung NCI-H2171 cells 29 31 2860 158 9 281 2726 TP73,CCDC27,SMIM1,TP73-AS1,MEGF6,WRAP73,TPRG1L
SE_02_011800343 chr1:3662682-3678522 Sample_02_0118 Haematopoietic and lymphoid tissue MINO 343 3 574 32 2 26 0 TP73,WDR8,TPRG1L
SE_02_068400126 chr1:3663655-3722588 Sample_02_0684 Lung DMS79 126 22 2193 95 4 210 952 TP73,CCDC27,TP73-AS1,WRAP73,TPRG1L
SE_02_121800879 chr1:3663733-3678804 Sample_02_1218 Bone marrow Daudi 879 6 544 29 2 26 0 TP73,TPRG1L,WRAP73,C1orf174
SE_02_133000707 chr1:3663791-3688232 Sample_02_1330 Blood AMU-AML1 707 9 882 46 2 54 233 TP73,TPRG1L,WRAP73
SE_02_044100398 chr1:3664004-3703494 Sample_02_0441 Bone M112 398 14 1485 71 3 88 494 TP73,CCDC27,TP73-AS1,WRAP73,TPRG1L
SE_02_050500048 chr1:3664020-3728874 Sample_02_0505 Esophagus KYSE70_1 48 25 2374 107 4 230 1442 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73,TPRG1L
SE_02_051600048 chr1:3664020-3728874 Sample_02_0516 Esophagus KYSE70 48 23 2374 107 4 230 1442 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73,TPRG1L
SE_02_146001312 chr1:3664110-3680713 Sample_02_1460 Blood Mutz-3 1312 10 603 29 2 25 0 TP73,TPRG1L,WRAP73
SE_02_103900448 chr1:3664188-3677586 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 448 9 484 24 2 25 0 TP73,TPRG1L,WRAP73
SE_02_050600083 chr1:3664231-3724902 Sample_02_0506 Esophagus TE5_1 83 17 2245 95 4 215 1063 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73,TPRG1L
SE_02_102700085 chr1:3664307-3719843 Sample_02_1027 Esophagus KYSE180_1 85 22 2072 83 4 194 803 TP73,CCDC27,TP73-AS1,WRAP73,TPRG1L
SE_02_073500468 chr1:3664478-3688892 Sample_02_0735 Lymphoma PAR_Mantle cell lymphoma tissue_THZ1 468 10 894 40 2 49 233 TP73,TPRG1L,WRAP73
SE_02_047900534 chr1:3666943-3718706 Sample_02_0479 Head and neck SCC25 534 16 1950 74 4 172 803 TP73,CCDC27,TP73-AS1,WRAP73,TPRG1L
SE_02_153900027 chr1:3668065-3724211 Sample_02_1539 Nasopharyngeal C666-1 27 22 2087 84 4 197 1063 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73,TPRG1L
SE_02_051700080 chr1:3668570-3735067 Sample_02_0517 Esophagus TE5 80 17 2467 121 7 261 2565 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73,TPRG1L
SE_02_154100234 chr1:3669411-3718665 Sample_02_1541 Nasopharyngeal HNE1 234 15 1853 73 4 172 803 TP73,CCDC27,TP73-AS1,WRAP73,TPRG1L
SE_02_087400312 chr1:3670840-3688337 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 312 6 631 31 2 34 233 TP73,TPRG1L,WRAP73
SE_02_067900341 chr1:3671149-3684623 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 341 6 474 24 1 19 233 TP73,TPRG1L,WRAP73
SE_02_113100717 chr1:3671500-3718013 Sample_02_1131 Pancreas T3M4 wt 717 15 1756 68 3 169 803 TP73,CCDC27,TP73-AS1,WRAP73,TPRG1L
SE_02_050400213 chr1:3674588-3724393 Sample_02_0504 Esophagus KYSE510_1 213 24 1830 74 3 190 1063 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73,TPRG1L
SE_02_043900773 chr1:3681170-3718003 Sample_02_0439 Bone Hu09 773 10 1418 53 2 162 803 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_129200406 chr1:3687174-3692693 Sample_02_1292 Lung JHU-LX110-SCLC PDX 406 3 237 7 0 13 157 TP73,WRAP73
SE_02_095700072 chr1:3689199-3735942 Sample_02_0957 Brain 429_Tumor_H3.3K27WT 72 16 1731 84 5 227 2521 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73
SE_02_096900301 chr1:3692556-3732724 Sample_02_0969 Brain H3.3K27M_PL637 301 13 1474 70 2 198 1637 TP73,CCDC27,SMIM1,TP73-AS1,WRAP73
SE_02_102501012 chr1:3697695-3719871 Sample_02_1025 Esophagus KYSE150 1012 12 830 30 2 133 413 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_059600334 chr1:3698158-3718545 Sample_02_0596 Mammary gland MCF10A_ DMSO 334 6 775 26 2 128 347 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_060000192 chr1:3698242-3718435 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 192 5 768 26 2 128 326 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_060100179 chr1:3698307-3718192 Sample_02_0601 Mammary gland MCF10A_p53shRNA_Nutlin3A 179 6 758 25 2 127 311 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_059500160 chr1:3698334-3718269 Sample_02_0595 Mammary gland MCF10A_scrshRNA_Nutlin3A 160 5 760 25 2 128 309 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_060400207 chr1:3699232-3718210 Sample_02_0604 Mammary gland MCF10A_scrshRNA_DMSO 207 5 709 22 2 115 309 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_048001096 chr1:3699318-3718186 Sample_02_0480 Gingival epithelial HGEP 1096 7 706 22 2 111 309 TP73,CCDC27,TP73-AS1,WRAP73
SE_02_050700395 chr1:3702121-3717939 Sample_02_0507 Esophagus TE7_1 395 9 595 17 1 109 309 TP73,CCDC27,TP73-AS1
SE_02_094700606 chr1:3702125-3718316 Sample_02_0947 Tongue Cal27 606 6 609 17 1 111 309 TP73,CCDC27,TP73-AS1
SE_02_130500440 chr1:3702155-3718662 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 440 8 613 17 1 111 309 TP73,CCDC27,TP73-AS1
SE_02_072500186 chr1:3702849-3718234 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 186 7 582 14 1 104 309 TP73,CCDC27,TP73-AS1
SE_02_114400202 chr1:3703183-3718501 Sample_02_1144 Peripheral nerve S462_PRC2 mutant 202 3 579 15 1 103 309 TP73,CCDC27,TP73-AS1
SE_02_104801744 chr1:3703926-3721905 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1744 4 655 17 1 102 323 TP73,CCDC27,TP73-AS1
SE_02_096600769 chr1:3705465-3732425 Sample_02_0966 Brain H3.3K27M_JN29-BS3 769 14 962 48 1 166 1481 TP73,CCDC27,SMIM1,TP73-AS1
SE_02_121300957 chr1:3709432-3741028 Sample_02_1213 Brain GBM31 957 7 1132 61 4 148 2656 TP73,TP73-AS1,CCDC27,SMIM1
SE_02_120300993 chr1:3709576-3740926 Sample_02_1203 Brain NB1 993 8 1124 61 4 148 2656 TP73,TP73-AS1,CCDC27,SMIM1
SE_02_117300958 chr1:3710072-3740636 Sample_02_1173 Brain GBM01 958 8 1095 60 4 148 2656 TP73,TP73-AS1,CCDC27,SMIM1
SE_02_095500517 chr1:3712302-3732662 Sample_02_0955 Brain IDH1_2469 517 9 695 43 0 100 1207 TP73,CCDC27,SMIM1,TP73-AS1
Genomic distribution of SEs associated with TP73
Genome Browser

The strength of the tissue affected by the gene

Expression of TP73

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)