SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000111077
Gene: TNS2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr12:53046969-53064379 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_052600019 chr12:52942392-53004519 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 19 15 1679 147 5 22 796 KRT18,KRT8,EIF4B,TNS2,LOC283335,CSAD,SPRYD3
SE_02_068700758 chr12:52942400-53004174 Sample_02_0687 Lung NCI-H146_no infection 758 12 1672 147 5 22 796 KRT18,KRT8,EIF4B,TNS2
SE_02_107700014 chr12:52943800-53004346 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 14 7 1625 142 5 22 796 KRT18,KRT8,EIF4B,TNS2,CSAD,SPRYD3,LOC283335
SE_02_150100431 chr12:52964196-53008812 Sample_02_1501 Brain SHEP-21N_NOSPIKE 431 12 1225 116 1 55 171 EIF4B,KRT18,TNS2,KRT8,LOC283335,MIR6757
SE_02_081601251 chr12:52964624-53012576 Sample_02_0816 Ovary Clear cell ovarian cancer 1251 17 1329 124 1 56 175 EIF4B,KRT18,TNS2,KRT8,LOC283335,MIR6757
SE_02_075700130 chr12:52965540-53014479 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 130 9 1366 128 1 56 175 EIF4B,KRT18,TNS2,KRT8,LOC283335,MIR6757
SE_02_116200136 chr12:52965911-53024623 Sample_02_1162 Stomach YCC11 136 14 1611 153 2 84 460 EIF4B,KRT18,TNS2,KRT8,LOC283335,MIR6757
SE_02_152500220 chr12:52967345-53009356 Sample_02_1525 Stomach N87 DMSO 220 8 1161 111 1 55 175 EIF4B,KRT18,TNS2,KRT8,LOC283335,MIR6757
SE_02_123400153 chr12:52967435-53008638 Sample_02_1234 Mammary gland T47D_Full 153 7 1135 109 1 55 148 EIF4B,KRT18,TNS2,KRT8,LOC283335,MIR6757
SE_02_050400612 chr12:52967510-53008908 Sample_02_0504 Esophagus KYSE510_1 612 13 1141 110 1 55 175 EIF4B,KRT18,TNS2,KRT8,LOC283335,MIR6757
SE_02_070300247 chr12:52967780-53012107 Sample_02_0703 Pancreas PATU8988S WT 247 14 1234 117 1 56 175 EIF4B,KRT18,TNS2,KRT8,LOC283335,MIR6757
SE_02_075400174 chr12:52967894-53013880 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 174 10 1282 123 1 56 175 EIF4B,KRT18,TNS2,KRT8,LOC283335,MIR6757
SE_02_152300187 chr12:52968821-53008300 Sample_02_1523 Lung A549 DMSO 187 6 1094 108 1 55 127 EIF4B,KRT18,TNS2,KRT8,LOC283335,MIR6757
SE_02_075300155 chr12:52969183-53012935 Sample_02_0753 Embryo ES-derived progenitors_FG type 155 12 1224 120 1 56 175 EIF4B,KRT18,TNS2,KRT8,LOC283335,MIR6757
SE_02_047800746 chr12:52969930-53009056 Sample_02_0478 Colon normal colon mucosa 746 16 1081 104 1 54 175 EIF4B,KRT18,TNS2,KRT8,LOC283335,MIR6757
SE_02_104301913 chr12:52988205-53038804 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1913 12 1352 153 2 107 806 EIF4B,KRT18,TNS2,LOC283335,KRT8,SPRYD3,MIR6757
SE_02_071000538 chr12:52988530-53012047 Sample_02_0710 Pancreas hN34_organoid 538 7 624 55 0 33 175 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757
SE_02_071201012 chr12:52988792-53009283 Sample_02_0712 Pancreas BxPC3_sgNEG 1012 3 535 48 0 33 175 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757
SE_02_071700552 chr12:52988857-53009376 Sample_02_0717 Pancreas HPAFII_GFP_DOX 552 4 536 48 0 33 175 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757
SE_02_059000759 chr12:52988900-53008850 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 759 6 517 46 0 33 175 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757,SPRYD3
SE_02_072100582 chr12:52988918-53009118 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 582 4 523 47 0 33 175 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757
SE_04_000600543 chr12:52991353-53008449 Sample_04_0006 Lung A549 GFP control 543 2 420 37 0 33 132 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757
SE_02_047600533 chr12:52991736-53012618 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 533 6 530 46 0 34 175 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757
SE_02_127300714 chr12:52991786-53015964 Sample_02_1273 Cervix HeLa 714 5 629 57 0 34 175 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757,SPRYD3
SE_04_000200962 chr12:52992030-53015788 Sample_04_0002 Blood cold shocked K562 962 3 620 56 0 34 175 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757,TENC1,CSAD,SPRYD3,SOAT2,KRT79
SE_02_158401470 chr12:52992359-53007864 Sample_02_1584 Brain U87 GBM_Mock 1470 2 380 35 0 33 127 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757
SE_02_122900724 chr12:52992522-53037082 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 724 20 1167 131 2 95 690 EIF4B,KRT18,TNS2,LOC283335,KRT8,SPRYD3,MIR6757,TENC1,CSAD,SOAT2,KRT79
SE_02_101600937 chr12:52992528-53014177 Sample_02_1016 Embryo H9_Mesendoderm_24h 937 3 563 52 0 34 175 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757
SE_02_148300832 chr12:52992917-53009447 Sample_02_1483 Bone RD-ES 832 4 409 35 0 33 175 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757
SE_02_148200503 chr12:53004098-53014768 Sample_02_1482 Bone POE 503 4 305 26 0 34 175 EIF4B,TNS2,LOC283335,MIR6757
SE_02_088400912 chr12:53004220-53009489 Sample_02_0884 Colon LoVo 912 1 147 10 0 33 175 EIF4B,TNS2,LOC283335,MIR6757
SE_02_058400652 chr12:53004252-53031380 Sample_02_0584 Lung H1299 WT 652 6 737 83 2 77 557 EIF4B,TNS2,LOC283335,SPRYD3,MIR6757
SE_02_142600475 chr12:53044010-53049532 Sample_02_1426 Shoulder fibroblast_341 475 1 139 23 0 44 697 LOC283335,TNS2,EIF4B,IGFBP6,SPRYD3,MIR6757
SE_02_082700946 chr12:53065295-53075680 Sample_02_0827 Stomach normal gastric 946 5 255 19 0 80 880 SPRYD3,TNS2,IGFBP6,LOC283335,SOAT2,MIR6757
SE_02_050001201 chr12:53065666-53100687 Sample_02_0500 Fetal lung IMR90_#2 1201 10 873 51 0 157 1321 IGFBP6,SPRYD3,TNS2,LOC283335,SOAT2,MIR6757,TENC1
SE_02_049901089 chr12:53066270-53100287 Sample_02_0499 Fetal lung IMR90 IR Senescence 1089 5 841 48 0 154 1161 IGFBP6,SPRYD3,TNS2,LOC283335,SOAT2,MIR6757,TENC1
SE_01_009300943 chr12:53094268-53118454 Sample_01_0093 Aorta ascending aorta 943 6 657 98 2 92 1239 IGFBP6,SOAT2,TNS2,LOC283335,SPRYD3,CSAD,MIR6757
SE_02_088600553 chr12:53095068-53103322 Sample_02_0886 Skin foreskin_ p63KLF4 553 1 221 12 0 50 491 IGFBP6,TNS2,LOC283335,SOAT2,SPRYD3,MIR6757
SE_02_158400512 chr12:53095808-53100365 Sample_02_1584 Brain U87 GBM_Mock 512 2 101 7 0 38 215 IGFBP6,TNS2,LOC283335,SOAT2,SPRYD3,MIR6757
SE_02_075700196 chr12:53099714-53124145 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 196 5 692 114 4 91 1657 IGFBP6,SOAT2,TNS2,LOC283335,SPRYD3,CSAD,MIR6757
Genomic distribution of SEs associated with TNS2
Genome Browser

The strength of the tissue affected by the gene

Expression of TNS2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)