SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000141524
Gene: TMC6 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:78107397-78132407 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_051000267 chr17:78104211-78107400 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 267 1 67 1 0 0 352 TNRC6C,TNRC6C-AS1,C17ORF99,TMC6,TMC8
SE_02_122100668 chr17:78128849-78133101 Sample_02_1221 Bone marrow KMS11 668 1 142 12 0 0 691 TMC8,TMC6,C17ORF99,TNRC6C-AS1,SYNGR2
SE_02_121900514 chr17:78128849-78134052 Sample_02_1219 Bone marrow H929 514 1 188 16 0 0 879 TMC8,TMC6,C17ORF99,TNRC6C-AS1,SYNGR2
SE_00_005601012 chr17:78128881-78134579 Sample_00_0056 Sigmoid colon sigmoid colon 3y 1012 1 209 18 0 0 952 TMC8,TMC6,C17ORF99,TNRC6C-AS1,SYNGR2
SE_02_104700888 chr17:78129373-78134241 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 888 1 183 17 0 0 867 TMC8,TMC6,C17ORF99,TNRC6C-AS1,SYNGR2
SE_02_032100743 chr17:78136706-78149339 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 743 1 460 40 0 0 1391 TMC8,C17ORF99,AFMID,TMC6,SYNGR2,TK1
SE_02_024100223 chr17:78137568-78184480 Sample_02_0241 Colon V456 223 11 1682 179 7 0 3205 TMC8,TK1,C17ORF99,SYNGR2,AFMID,BIRC5,TMC6,LOC283999,EPR1
SE_02_102700424 chr17:78138610-78164794 Sample_02_1027 Esophagus KYSE180_1 424 11 926 90 2 0 1482 TMC8,C17ORF99,BIRC5,AFMID,TNRC6C-AS1,TK1,TMC6,SYNGR2
SE_02_008100314 chr17:78138718-78181161 Sample_02_0081 Blood Monocyte-derived_dendritic_cells 314 7 1518 165 7 0 2834 TMC8,TK1,C17ORF99,SYNGR2,AFMID,BIRC5,TMC6,EPR1
SE_02_154100314 chr17:78139292-78174699 Sample_02_1541 Nasopharyngeal HNE1 314 16 1246 134 5 0 2446 TMC8,TK1,C17ORF99,SYNGR2,BIRC5,AFMID,TNRC6C-AS1,TMC6
SE_02_113100549 chr17:78139664-78175091 Sample_02_1131 Pancreas T3M4 wt 549 15 1244 132 5 0 2463 TMC8,TK1,C17ORF99,SYNGR2,BIRC5,AFMID,TNRC6C-AS1,TMC6
SE_02_052200178 chr17:78139963-78176549 Sample_02_0522 Colon SW620 178 11 1305 142 6 0 2572 TMC8,TK1,C17ORF99,SYNGR2,BIRC5,AFMID,TNRC6C-AS1,TMC6
SE_02_074900674 chr17:78140698-78149053 Sample_02_0749 Mammary gland HCC1599_GSI 674 1 298 27 0 0 702 TMC8,C17ORF99,AFMID,TMC6,TK1,TNRC6C-AS1,SYNGR2
SE_02_122901392 chr17:78140773-78153059 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1392 1 442 37 0 0 687 TMC8,C17ORF99,AFMID,TMC6,TK1,TNRC6C-AS1,SYNGR2
SE_02_131400317 chr17:78140886-78159369 Sample_02_1314 Brain hMGLs_TREM2-KO 317 7 675 63 1 0 745 TMC8,C17ORF99,AFMID,TMC6,TK1,TNRC6C-AS1,SYNGR2
SE_04_000101042 chr17:78143081-78149178 Sample_04_0001 Blood heat shocked K562 1042 1 224 22 0 0 239 C17ORF99,AFMID,TMC6,TK1,TMC8,TNRC6C-AS1,SYNGR2
SE_02_078300119 chr17:78143242-78157054 Sample_02_0783 Blood MEC2 119 1 487 42 1 0 223 C17ORF99,AFMID,TMC6,TK1,TMC8,TNRC6C-AS1,SYNGR2
SE_01_004200243 chr17:78143654-78182224 Sample_01_0042 Haematopoietic and lymphoid tissue KMS-11 243 7 1408 157 7 0 2068 TK1,C17ORF99,SYNGR2,AFMID,BIRC5,TMC6,TMC8,LOC283999,EPR1
SE_02_073600142 chr17:78148563-78159595 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 142 6 407 38 1 0 75 C17ORF99,AFMID,TMC6,TK1,TMC8,TNRC6C-AS1,SYNGR2
SE_02_082700370 chr17:78148840-78176622 Sample_02_0827 Stomach normal gastric 370 9 995 116 6 0 1845 TK1,C17ORF99,SYNGR2,BIRC5,AFMID,TNRC6C-AS1,TMC8,TMC6
SE_02_064502016 chr17:78160125-78174512 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2016 3 490 67 4 0 1453 TK1,C17ORF99,SYNGR2,BIRC5,AFMID,TNRC6C-AS1,TMC8,TMC6
SE_02_081900828 chr17:78167311-78176627 Sample_02_0819 Ovary Mucinous ovarian cancer 828 1 329 45 3 0 1104 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8
SE_02_078300941 chr17:78167450-78175168 Sample_02_0783 Blood MEC2 941 1 262 34 2 0 970 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8
SE_02_032100595 chr17:78167488-78177618 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 595 1 361 52 4 0 1104 TK1,SYNGR2,C17ORF99,AFMID,BIRC5,TMC6,TMC8,EPR1
SE_01_007400578 chr17:78167645-78188247 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 578 1 714 81 4 0 1526 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,LOC283999,EPR1
SE_02_104901054 chr17:78167891-78174064 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1054 1 216 30 2 0 726 SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TK1,TMC8
SE_01_008401409 chr17:78167896-78177332 Sample_01_0084 Spleen spleen 1409 1 337 48 4 0 1104 TK1,SYNGR2,C17ORF99,AFMID,BIRC5,TMC6,TMC8,EPR1
SE_02_117300887 chr17:78167939-78177016 Sample_02_1173 Brain GBM01 887 1 323 46 4 0 1104 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8
SE_02_023700702 chr17:78167951-78177369 Sample_02_0237 Colon V389 702 1 336 50 4 0 1104 TK1,SYNGR2,C17ORF99,AFMID,BIRC5,TMC6,TMC8,EPR1
SE_02_081000246 chr17:78167978-78177173 Sample_02_0810 Mammary gland T47D noSerum 246 6 325 48 4 0 1104 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8
SE_02_108600503 chr17:78167986-78177163 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 503 5 325 48 4 0 1104 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8
SE_02_109000555 chr17:78168009-78177241 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 555 6 329 48 4 0 1104 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8
SE_02_109100450 chr17:78168064-78177125 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 450 8 322 48 4 0 1104 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8
SE_02_092500722 chr17:78168113-78181199 Sample_02_0925 Heart fetal heart_PCW17_12570 722 3 478 61 4 0 1104 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8
SE_02_078100388 chr17:78168608-78195761 Sample_02_0781 Lymphoma Pfeiffer_DMSO 388 1 958 115 5 0 1557 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_092100816 chr17:78168962-78184929 Sample_02_0921 Heart embryonic heart_CS22 816 7 569 66 4 0 1037 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_02_151000554 chr17:78170281-78201063 Sample_02_1510 Lung H3122_LR_Pano 554 13 1125 125 4 0 1588 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_076400218 chr17:78170509-78201015 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 218 4 1112 123 4 0 1588 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_067200844 chr17:78170562-78200044 Sample_02_0672 Endometrium endometrium cancer_DSG 844 10 1072 118 4 0 1588 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_00_005600996 chr17:78170595-78180285 Sample_00_0056 Sigmoid colon sigmoid colon 3y 996 3 379 45 3 0 946 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8
SE_02_122300552 chr17:78170598-78183086 Sample_02_1223 Bone marrow KMS28BM 552 4 459 49 3 0 1026 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_01_008300752 chr17:78170603-78199862 Sample_01_0083 Sigmoid colon sigmoid-colon 752 4 1060 118 4 0 1588 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,LOC283999,EPR1
SE_02_129900333 chr17:78170609-78211870 Sample_02_1299 Liver liver 333 9 1504 153 4 0 2421 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_00_002201028 chr17:78170632-78179946 Sample_00_0022 Lung lung_30y 1028 2 359 41 3 0 945 TK1,SYNGR2,C17ORF99,AFMID,BIRC5,TMC6,TMC8,EPR1
SE_02_074700478 chr17:78170641-78184326 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 478 6 492 51 3 0 1023 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_00_003500730 chr17:78170710-78180410 Sample_00_0035 Sigmoid colon sigmoid-colon 730 2 373 44 3 0 932 TK1,SYNGR2,C17ORF99,AFMID,BIRC5,TMC6,TMC8,EPR1
SE_01_010400665 chr17:78170964-78202869 Sample_01_0104 Lung upper lobe of left lung 665 8 1164 133 4 0 1630 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_140600247 chr17:78170991-78200601 Sample_02_1406 Prostate LNCaP_EtOH_vehicle_4h 247 7 1071 117 4 0 1521 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_139400256 chr17:78171039-78198955 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 256 5 993 110 4 0 1511 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_122100688 chr17:78171046-78181748 Sample_02_1221 Bone marrow KMS11 688 3 401 44 3 0 867 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_02_074600797 chr17:78171102-78181492 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 797 6 390 44 3 0 853 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_02_129800191 chr17:78171148-78211809 Sample_02_1298 Hilar lymph node Hilar lymph node 191 7 1474 151 4 0 2316 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_155400400 chr17:78171217-78186656 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 400 6 530 58 3 0 1004 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_01_010100598 chr17:78171267-78200374 Sample_01_0101 Pancreas pancreas_54y 598 5 1053 116 4 0 1468 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_129600361 chr17:78171278-78200837 Sample_02_1296 Perigastric lymph node Perigastric lymph node 361 6 1070 119 4 0 1468 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_025700577 chr17:78171563-78200461 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 577 4 1044 116 4 0 1393 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,LOC283999,EPR1
SE_02_067400732 chr17:78171921-78200355 Sample_02_0674 Endometrium E1_FA 732 9 1026 115 4 0 1301 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_154400289 chr17:78171930-78186623 Sample_02_1544 Gastrointestinal Stromal GIST-882 289 5 501 56 3 0 818 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_02_074800710 chr17:78171996-78201033 Sample_02_0748 Mammary gland HCC1599_WO 710 5 1045 121 4 0 1278 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_074900331 chr17:78172033-78201231 Sample_02_0749 Mammary gland HCC1599_GSI 331 7 1048 121 4 0 1271 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_140700398 chr17:78172062-78200554 Sample_02_1407 Prostate LNCaP_R1881 4h 398 6 1025 115 4 0 1267 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_155800169 chr17:78172065-78186551 Sample_02_1558 Gastrointestinal Stromal GIST-7_PDGFRA e18 169 7 491 55 3 0 781 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_02_155900427 chr17:78172091-78186664 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 427 4 493 56 3 0 794 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_02_067300508 chr17:78172144-78200357 Sample_02_0673 Prostate LNCAP_FA 508 5 1015 113 4 0 1247 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_00_005800789 chr17:78172187-78185381 Sample_00_0058 Stomach stomach 34y 789 7 460 49 3 0 760 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_01_010300456 chr17:78172190-78199999 Sample_01_0103 Pancreas pancreas_37y 456 6 996 113 4 0 1242 AFMID,TK1,SYNGR2,C17ORF99,BIRC5,TMC6,TMC8,TMEM235
SE_02_156500256 chr17:78172454-78186051 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 256 6 469 52 3 0 697 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_02_156200083 chr17:78172460-78186562 Sample_02_1562 Gastrointestinal Stromal GIST-11_SDHC deletion 83 13 476 54 3 0 695 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_02_063000362 chr17:78172902-78187102 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 362 5 485 53 3 0 741 TK1,SYNGR2,C17ORF99,BIRC5,AFMID,TMC6,TMC8,TMEM235
SE_02_140800395 chr17:78172975-78200223 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 395 6 982 110 4 0 1078 AFMID,TK1,C17ORF99,BIRC5,TMC6,TMC8,SYNGR2,TMEM235
SE_02_146500394 chr17:78173772-78199931 Sample_02_1465 Ovary CAOV4cis 394 5 940 106 3 0 1043 AFMID,TK1,C17ORF99,BIRC5,TMC6,TMC8,SYNGR2,TMEM235
SE_02_016200274 chr17:78174078-78200048 Sample_02_0162 Prostate C4-2B_vehicle_24h 274 4 935 104 3 0 1016 AFMID,TK1,C17ORF99,BIRC5,SYNGR2,TMC6,TMC8,LOC283999,EPR1
SE_02_016300384 chr17:78174128-78185647 Sample_02_0163 Prostate C4-2B_SR2211_24h 384 4 401 40 2 0 528 TK1,C17ORF99,AFMID,BIRC5,SYNGR2,TMC6,TMC8,LOC283999,EPR1
SE_00_003000438 chr17:78174134-78184823 Sample_00_0030 Pancreas pancreas 438 5 376 40 2 0 449 TK1,C17ORF99,AFMID,BIRC5,SYNGR2,TMC6,TMC8,LOC283999,EPR1
SE_02_156300143 chr17:78176971-78185876 Sample_02_1563 Gastrointestinal Stromal GIST-12_SDHC deletion 143 5 304 26 0 0 159 TK1,C17ORF99,BIRC5,AFMID,TMC6,TMC8,SYNGR2,TMEM235
SE_02_098901431 chr17:78182169-78194172 Sample_02_0989 Kidney kidney cortex_WT 1431 1 395 44 0 0 525 AFMID,TK1,C17ORF99,BIRC5,TMC6,SYNGR2,TMEM235
Genomic distribution of SEs associated with TMC6
Genome Browser

The strength of the tissue affected by the gene

Expression of TMC6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)