SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000141002
Gene: TCF25 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:89873570-89913627 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_110500843 chr16:89778990-89848431 Sample_02_1105 Brain NBL-S 843 18 2927 408 15 73 1730 SPIRE2,FANCA,TCF25
SE_02_031300276 chr16:89786177-89824328 Sample_02_0313 Neuroblastoma SK-N-DZ 276 7 1715 223 9 28 1057 FANCA,TCF25,SPIRE2
SE_02_012400274 chr16:89798467-89839184 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 274 9 1694 211 7 49 1045 SPIRE2,FANCA,TCF25
SE_02_121800085 chr16:89803393-89861304 Sample_02_1218 Bone marrow Daudi 85 24 2292 306 8 93 1925 SPIRE2,FANCA,TCF25
SE_02_024200175 chr16:89810309-89854884 Sample_02_0242 Colon V481 175 7 1705 239 6 68 1185 SPIRE2,FANCA,TCF25
SE_02_023700104 chr16:89810418-89861472 Sample_02_0237 Colon V389 104 14 1959 263 6 90 1815 SPIRE2,FANCA,TCF25
SE_02_139700152 chr16:89814495-89865378 Sample_02_1397 Stomach SNU16 152 8 1899 259 6 86 1872 SPIRE2,FANCA,TCF25
SE_02_146500294 chr16:89814539-89837511 Sample_02_1465 Ovary CAOV4cis 294 8 882 120 4 37 625 SPIRE2,FANCA,TCF25
SE_02_056300197 chr16:89814651-89848310 Sample_02_0563 Mammary gland MCF7L-P_0h 197 12 1265 180 5 45 689 SPIRE2,FANCA,TCF25
SE_01_003800267 chr16:89815544-89839206 Sample_01_0038 Liver HepG2 267 4 912 125 4 36 593 SPIRE2,FANCA,TCF25,C16ORF7,C1R,TUBB3,ZNF276
SE_00_003100656 chr16:89816506-89844214 Sample_00_0031 Placenta placenta 656 6 1039 153 5 41 418 SPIRE2,FANCA,TCF25
SE_02_092900968 chr16:89818917-89843571 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 968 12 915 128 3 38 322 SPIRE2,TCF25,FANCA,TUBB3,DEF8,SPATA33,GAS8,CENPBD1
SE_02_127300846 chr16:89818989-89848182 Sample_02_1273 Cervix HeLa 846 11 1073 152 3 41 394 SPIRE2,TCF25,FANCA,MC1R
SE_02_115100195 chr16:89819004-89871905 Sample_02_1151 Mammary gland MCF-7_UNTR 195 29 1912 253 5 101 2026 SPIRE2,TCF25,MC1R,FANCA,TUBB3,DEF8
SE_02_077500881 chr16:89819274-89825845 Sample_02_0775 Pancreas EndoC-BH1_SE 881 1 240 27 1 3 0 TCF25,SPIRE2,FANCA
SE_02_157800375 chr16:89819530-89845123 Sample_02_1578 Mammary gland MCF7_DAC+455 375 14 946 136 3 38 322 SPIRE2,TCF25,FANCA,MC1R,TUBB3
SE_02_082600644 chr16:89819779-89870193 Sample_02_0826 Stomach gastric tumor 644 18 1832 248 5 95 1769 SPIRE2,TCF25,MC1R,FANCA
SE_02_146400471 chr16:89820005-89846039 Sample_02_1464 Ovary CAOV4 471 5 947 139 3 39 394 SPIRE2,TCF25,FANCA
SE_02_103200574 chr16:89820117-89862294 Sample_02_1032 Head and neck SCC1 JQ1 574 8 1551 219 4 79 1425 SPIRE2,TCF25,FANCA
SE_02_001500285 chr16:89821353-89840324 Sample_02_0015 Liver HepG2_shNS 285 4 706 101 2 32 322 SPIRE2,TCF25,FANCA
SE_00_003601299 chr16:89821366-89848443 Sample_00_0036 Small intestine small-intestine_108days 1299 5 990 144 3 41 394 SPIRE2,TCF25,FANCA
SE_02_024100095 chr16:89821415-89854167 Sample_02_0241 Colon V456 95 9 1174 178 4 53 642 SPIRE2,TCF25,FANCA
SE_02_070300353 chr16:89821429-89853553 Sample_02_0703 Pancreas PATU8988S WT 353 6 1142 174 3 51 629 SPIRE2,TCF25,FANCA
SE_02_008600374 chr16:89821471-89854753 Sample_02_0086 Pancreas CAPAN1 374 5 1213 183 4 57 770 SPIRE2,TCF25,FANCA
SE_01_007900691 chr16:89821718-89865167 Sample_01_0079 Peyers patch Peyers-patch 691 7 1591 223 4 81 1567 SPIRE2,TCF25,FANCA
SE_02_082700899 chr16:89821736-89839203 Sample_02_0827 Stomach normal gastric 899 4 643 93 2 32 322 SPIRE2,TCF25,FANCA
SE_02_005100159 chr16:89821858-89848576 Sample_02_0051 Mammary gland MCF-7_EtOH 159 6 971 145 3 41 394 SPIRE2,TCF25,FANCA
SE_02_080900574 chr16:89821871-89843612 Sample_02_0809 Mammary gland T47D Serum 574 4 796 119 3 38 322 SPIRE2,TCF25,FANCA
SE_02_137100225 chr16:89821903-89848389 Sample_02_1371 Pancreas Patu899S-untreated 225 12 962 144 3 41 394 SPIRE2,TCF25,FANCA
SE_02_125500390 chr16:89821939-89847980 Sample_02_1255 Bladder Bladder tumor Luminal2 390 5 949 141 3 41 394 SPIRE2,TCF25,FANCA
SE_02_062400395 chr16:89821997-89848352 Sample_02_0624 Mammary gland TAMR_VEH 395 5 960 143 3 41 394 SPIRE2,TCF25,FANCA
SE_02_047700346 chr16:89822046-89854267 Sample_02_0477 Colon intestinal epithelial organoids_139a 346 10 1151 178 4 53 664 SPIRE2,TCF25,FANCA,TUBB3,DEF8,SPATA33,MC1R,CHMP1A,SPATA2L
SE_00_004900463 chr16:89822047-89854138 Sample_00_0049 Small intestine small intestine 30y 463 13 1147 177 4 53 634 SPIRE2,TCF25,FANCA,CDK10,TUBB3,DEF8,MC1R,CHMP1A,ZNF276,SPATA2L
SE_02_136700090 chr16:89822057-89864353 Sample_02_1367 Pancreas Capan1-untreated 90 11 1551 221 4 81 1567 SPIRE2,TCF25,FANCA
SE_02_136500486 chr16:89822062-89853838 Sample_02_1365 Pancreas AsPC1-untreated 486 12 1135 175 4 51 629 SPIRE2,TCF25,FANCA
SE_02_047800489 chr16:89822114-89854109 Sample_02_0478 Colon normal colon mucosa 489 7 1146 177 4 53 629 SPIRE2,TCF25,FANCA,CDK10,TUBB3,DEF8,ACSF3,ZNF276
SE_00_003500669 chr16:89822120-89848501 Sample_00_0035 Sigmoid colon sigmoid-colon 669 8 961 143 3 41 394 SPIRE2,TCF25,FANCA
SE_02_062300470 chr16:89822162-89848202 Sample_02_0623 Mammary gland TAMR_E2 470 5 952 142 3 41 394 SPIRE2,TCF25,FANCA
SE_02_071800288 chr16:89822169-89853523 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 288 10 1115 173 3 51 629 SPIRE2,TCF25,FANCA
SE_01_010901065 chr16:89822326-89864603 Sample_01_0109 Colon transverse colon_54y 1065 12 1550 217 4 81 1567 SPIRE2,TCF25,FANCA,CDK10,TUBB3,DEF8,ACSF3,ZNF276
SE_02_023600283 chr16:89822624-89853628 Sample_02_0236 Colon V206 283 10 1100 169 3 50 629 SPIRE2,TCF25,FANCA
SE_02_072200294 chr16:89822732-89848145 Sample_02_0722 Pancreas PATU8988S_TP63dN_DOX 294 12 923 137 2 39 394 SPIRE2,TCF25,FANCA
SE_00_005600942 chr16:89822848-89864777 Sample_00_0056 Sigmoid colon sigmoid colon 3y 942 11 1535 216 3 79 1567 SPIRE2,TCF25,FANCA
SE_02_024000790 chr16:89827088-89854217 Sample_02_0240 Colon V429_2 790 9 956 153 3 50 654 SPIRE2,TCF25,FANCA
SE_02_070900490 chr16:89828576-89854274 Sample_02_0709 Pancreas hT85_organoid 490 9 922 146 3 41 553 SPIRE2,TCF25,FANCA
SE_02_035300795 chr16:89828606-89854322 Sample_02_0353 Colon HT29 795 7 923 146 3 41 552 SPIRE2,TCF25,FANCA
SE_02_104601354 chr16:89831869-89871835 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1354 16 1438 185 4 70 1793 SPIRE2,TCF25,MC1R,FANCA
SE_02_005000054 chr16:89914328-89939447 Sample_02_0050 Skin BJ 54 10 986 101 10 133 2272 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_085800406 chr16:89914500-89925139 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 406 2 408 35 9 59 1164 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_044401123 chr16:89915329-89926173 Sample_02_0444 Bone osteosarcoma tumor P10 1123 4 407 40 9 62 1067 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_026401028 chr16:89916903-89923502 Sample_02_0264 Skeletal muscle 7250-empty 1028 1 266 23 7 43 1011 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_025900270 chr16:89917001-89926399 Sample_02_0259 Lung NCI-H1299_EGFP-NEO_reporter_cells_SAHA 270 1 345 33 7 62 1063 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_139100544 chr16:89917053-89924554 Sample_02_1391 Peripheral blood FE-PD_ALK- 544 1 289 24 7 50 1063 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_016500360 chr16:89917099-89923553 Sample_02_0165 Lung H2087_LCC2 360 1 260 22 7 43 1027 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_102900657 chr16:89917139-89923232 Sample_02_1029 Colon HCT116 657 1 253 21 7 35 934 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_139000709 chr16:89917145-89924545 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 709 1 287 23 7 50 1063 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_138800400 chr16:89917156-89926031 Sample_02_1388 Peripheral blood JB6_ALK+ 400 3 327 30 7 62 1063 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_006900547 chr16:89917166-89923236 Sample_02_0069 Brain SF268 547 2 252 20 7 35 935 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_025800277 chr16:89917170-89924386 Sample_02_0258 Lung NCI-H1299_EGFP-NEO_reporter_cells_DMSO 277 1 280 20 7 50 1063 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_039500776 chr16:89917241-89926299 Sample_02_0395 Mammary gland BT-549 776 1 335 31 7 62 1063 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_029500507 chr16:89917309-89926158 Sample_02_0295 Lung A549_TGFBeta_72h 507 3 328 30 7 62 1063 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_066300729 chr16:89917312-89923202 Sample_02_0663 Thyroid TT 729 1 249 20 7 35 924 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_018100813 chr16:89917353-89924165 Sample_02_0181 melanoma COLO679 813 1 272 20 7 45 1063 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_018200581 chr16:89917433-89926108 Sample_02_0182 melanoma LOX-IMVI 581 2 323 30 7 62 1063 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_006800335 chr16:89917628-89923185 Sample_02_0068 Skin A375_DMSO 335 1 237 20 7 35 922 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_044200306 chr16:89918064-89925957 Sample_02_0442 Bone MG63.3 306 2 298 28 7 61 993 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_103601585 chr16:89919394-89935448 Sample_02_1036 Mammary gland HCC70_XY018 1585 5 635 61 8 111 1573 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_061000504 chr16:89919686-89926146 Sample_02_0610 Liposarcoma MLS 1765-92 504 2 232 22 4 53 604 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_036900712 chr16:89919842-89926271 Sample_02_0369 Skeletal muscle RD 712 1 214 18 1 48 580 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_037900712 chr16:89919842-89926271 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 712 1 214 18 1 48 580 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_143300632 chr16:89920154-89926849 Sample_02_1433 Bone A673 STAG2 null 632 1 214 22 1 41 518 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_158400494 chr16:89920187-89926240 Sample_02_1584 Brain U87 GBM_Mock 494 2 184 18 1 41 511 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_005500704 chr16:89920202-89926329 Sample_02_0055 Lung IMR-90_Nutlin-3a 704 2 188 17 1 41 510 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_005400640 chr16:89920213-89926311 Sample_02_0054 Lung IMR-90_DMSO_1 640 2 186 17 1 41 508 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_015800393 chr16:89920247-89926506 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 393 1 188 16 1 41 501 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_04_001000827 chr16:89920267-89926163 Sample_04_0010 Lung A549 TGFb 827 2 174 15 1 41 500 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_132200375 chr16:89920303-89926096 Sample_02_1322 Connective Tissue HT1080_WT 375 2 173 15 1 41 492 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_147000719 chr16:89920329-89926096 Sample_02_1470 Umbilical Vein H441 719 1 172 15 1 41 485 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_079900370 chr16:89920409-89924154 Sample_02_0799 Brain MESMN1 370 1 110 4 0 24 469 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_132000449 chr16:89920448-89926206 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 449 2 166 15 0 41 455 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_007600724 chr16:89920553-89926729 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 724 2 180 15 0 41 434 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_132100730 chr16:89920573-89924074 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 730 1 99 4 0 24 428 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_085600547 chr16:89920634-89924761 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 547 1 123 6 0 34 417 TUBB3,MC1R,CENPBD1,TCF25,AFG3L1P,DEF8
SE_02_001400241 chr16:89920663-89924735 Sample_02_0014 Liver HepG2_shBRG1 241 1 122 6 0 34 410 TUBB3,MC1R,DEF8,TCF25,AFG3L1P,CENPBD1
SE_02_064701163 chr16:89921092-89926125 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1163 2 149 13 0 41 313 TUBB3,CENPBD1,TCF25,AFG3L1P,MC1R,DEF8
SE_02_093300182 chr16:89921105-89935597 Sample_02_0933 Embryo H7 UTXKO 182 3 528 49 1 100 1256 TUBB3,CENPBD1,TCF25,AFG3L1P,MC1R,DEF8
SE_02_147200819 chr16:89921130-89924706 Sample_02_1472 Fetal lung IMR-90 819 1 110 5 0 34 299 TUBB3,CENPBD1,TCF25,AFG3L1P,MC1R,DEF8
SE_02_126100531 chr16:89921157-89924138 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 531 1 89 3 0 24 295 TUBB3,CENPBD1,TCF25,AFG3L1P,MC1R,DEF8
SE_02_093400434 chr16:89921158-89926134 Sample_02_0934 Embryo H7-WT 434 3 146 13 0 41 295 TUBB3,CENPBD1,TCF25,AFG3L1P,MC1R,DEF8
SE_02_102100467 chr16:89921220-89924014 Sample_02_1021 Mammary gland SUM159R 467 1 83 3 0 24 295 TUBB3,CENPBD1,TCF25,AFG3L1P,MC1R,DEF8
Genomic distribution of SEs associated with TCF25
Genome Browser

The strength of the tissue affected by the gene

Expression of TCF25

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)