SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000113140
Gene: SPARC Gene type: protein_coding
Strand: - External links:
Genomic region: chr5:151661096-151686975 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_039600265 chr5:151549996-151647562 Sample_02_0396 Skin NHEK-D 265 25 2880 203 8 292 1150 FAT2,SPARC
SE_02_050800011 chr5:151555826-151652685 Sample_02_0508 Esophagus TT_1 11 44 2860 212 7 255 826 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_02_051800012 chr5:151559385-151652685 Sample_02_0518 Esophagus TT_Esophagus carcinoma 12 42 2767 212 5 255 763 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_02_047900094 chr5:151564866-151652518 Sample_02_0479 Head and neck SCC25 94 40 2567 191 4 236 629 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_02_022800016 chr5:151565534-151652909 Sample_02_0228 Oesophagus KYSE510 16 10 2554 187 4 236 650 FAT2,SPARC
SE_02_050400018 chr5:151565991-151652076 Sample_02_0504 Esophagus KYSE510_1 18 35 2515 186 4 229 484 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_01_004100018 chr5:151568206-151647903 Sample_01_0041 Skin keratinocyte 18 9 2322 171 4 181 136 FAT2,SPARC
SE_02_006300011 chr5:151568206-151648801 Sample_02_0063 Skin Keratinocytes 11 7 2348 173 4 181 136 FAT2,SPARC
SE_02_154000034 chr5:151568270-151652190 Sample_02_1540 Nasopharyngeal HK1 34 26 2432 179 4 179 138 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_02_125400175 chr5:151568422-151649677 Sample_02_1254 Bladder Bladder tumor Basal1 175 21 2365 175 4 168 104 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_02_010500007 chr5:151568456-151648947 Sample_02_0105 Skin neonatal_keratinocytes 7 8 2340 172 4 163 98 FAT2,SPARC
SE_02_135800009 chr5:151568456-151648990 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 9 16 2340 172 4 163 98 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_02_064800013 chr5:151568538-151652020 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 13 28 2418 177 4 158 85 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_01_010700100 chr5:151568585-151649740 Sample_01_0107 Esophagus esophagus squamous epithelium 100 17 2359 174 4 158 79 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_02_135900015 chr5:151568638-151652039 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 15 29 2415 177 4 156 76 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_02_065200043 chr5:151568710-151648210 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 43 27 2311 170 4 156 66 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_02_059600004 chr5:151568849-151652120 Sample_02_0596 Mammary gland MCF10A_ DMSO 4 15 2408 178 4 153 45 FAT2,CTB-113P19.1,MIR6499,SPARC
SE_02_153200011 chr5:151569269-151652132 Sample_02_1532 Mammary gland MCF10A 11 15 2393 178 4 149 0 CTB-113P19.1,MIR6499,SPARC,FAT2
SE_02_136100412 chr5:151569429-151647833 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 412 16 2272 170 4 148 0 CTB-113P19.1,MIR6499,SPARC,FAT2
SE_02_060400009 chr5:151569608-151652012 Sample_02_0604 Mammary gland MCF10A_scrshRNA_DMSO 9 22 2377 176 4 148 0 CTB-113P19.1,MIR6499,SPARC,FAT2
SE_02_029400112 chr5:151610866-151652627 Sample_02_0294 Pancreatic L3-6_DMSO 112 5 1220 97 3 64 75 FAT2,SPARC
SE_02_005600417 chr5:151611070-151646723 Sample_02_0056 Mammary gland HMEC 417 10 1057 85 3 63 0 FAT2,SPARC
SE_02_050600087 chr5:151611193-151652638 Sample_02_0506 Esophagus TE5_1 87 14 1212 97 3 62 75 CTB-113P19.1,FAT2,SPARC
SE_02_051700088 chr5:151611194-151652638 Sample_02_0517 Esophagus TE5 88 14 1212 97 3 62 75 CTB-113P19.1,FAT2,SPARC
SE_02_102600122 chr5:151611353-151652187 Sample_02_1026 Esophagus KYSE200 122 17 1197 97 3 60 12 CTB-113P19.1,FAT2,SPARC
SE_02_000500113 chr5:151611822-151649221 Sample_02_0005 Cervical cervical-cancer_KDM5C 113 4 1116 92 3 56 0 FAT2,SPARC
SE_02_005700390 chr5:151611984-151647845 Sample_02_0057 Mammary gland vHMEC 390 8 1070 89 3 56 0 FAT2,SPARC
SE_02_064900533 chr5:151612054-151647789 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 533 18 1066 89 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_113100068 chr5:151612143-151651923 Sample_02_1131 Pancreas T3M4 wt 68 17 1177 96 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_066000635 chr5:151612164-151648443 Sample_02_0660 Mammary gland MCF10DCIS 635 8 1088 91 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_064700599 chr5:151612378-151648099 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 599 13 1066 89 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_059700029 chr5:151612387-151647877 Sample_02_0597 Mammary gland MCF10A_Nutlin3A 29 7 1062 89 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_01_004500681 chr5:151612479-151647870 Sample_01_0045 Mammary gland mammary-epithelial-cell 681 4 1061 89 3 56 0 FAT2,SPARC
SE_02_094800264 chr5:151612484-151652064 Sample_02_0948 Pharyng Detroit562 264 8 1171 97 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_094700041 chr5:151612533-151648889 Sample_02_0947 Tongue Cal27 41 7 1089 91 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_107300618 chr5:151612545-151647676 Sample_02_1073 Keratinocyte keratinocytes stem cell 618 8 1054 89 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_048000398 chr5:151612550-151647766 Sample_02_0480 Gingival epithelial HGEP 398 16 1056 89 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_094500037 chr5:151612551-151652042 Sample_02_0945 Brain SF767 37 14 1168 96 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_130500047 chr5:151612607-151649723 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 47 17 1110 93 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_00_001100235 chr5:151612661-151649879 Sample_00_0011 Esophagus esophagus 235 8 1115 93 3 56 0 FAT2,SPARC
SE_02_135700095 chr5:151612739-151648574 Sample_02_1357 Other IC8-deltaEGF-L1596H_GSI_0h 95 14 1081 91 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_060300164 chr5:151612980-151647788 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 164 10 1051 89 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_060100021 chr5:151612994-151651980 Sample_02_0601 Mammary gland MCF10A_p53shRNA_Nutlin3A 21 15 1162 96 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_060000023 chr5:151613002-151652021 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 23 9 1163 96 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_060200133 chr5:151613012-151648369 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 133 9 1071 91 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_053000255 chr5:151613015-151648133 Sample_02_0530 Mammary gland MCF10A 255 11 1059 89 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_136201003 chr5:151613016-151652000 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 1003 8 1161 96 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_136000532 chr5:151613021-151659580 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 532 13 1349 118 4 58 258 CTB-113P19.1,FAT2,SPARC
SE_02_113200448 chr5:151613050-151652080 Sample_02_1132 Pancreas KLM1 wt 448 13 1160 96 3 57 0 CTB-113P19.1,FAT2,SPARC,LOC100652758,SLC36A1
SE_02_051500146 chr5:151613090-151648957 Sample_02_0515 Esophagus KYSE140 146 11 1079 90 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_050300148 chr5:151613098-151648971 Sample_02_0503 Esophagus KYSE140_1 148 11 1079 90 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_102700330 chr5:151613176-151649362 Sample_02_1027 Esophagus KYSE180_1 330 21 1088 90 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_059500035 chr5:151613381-151652062 Sample_02_0595 Mammary gland MCF10A_scrshRNA_Nutlin3A 35 8 1146 93 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_112100132 chr5:151613389-151647671 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 132 17 1028 85 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_072500023 chr5:151613411-151648368 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 23 23 1050 87 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_112000190 chr5:151613429-151649311 Sample_02_1120 Neonatal foreskin keratinocytes_CTR 190 16 1073 88 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_026600020 chr5:151613454-151648221 Sample_02_0266 Bronchial HBE_Primary human bronchial epithelial cells_ 20 12 1040 85 3 56 0 FAT2,SPARC
SE_02_065300333 chr5:151613459-151647617 Sample_02_0653 Tracheobronchial epithelial HTBE_H5N1_03h 333 10 1024 84 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_133800078 chr5:151614107-151647619 Sample_02_1338 Esophagus KYSE180 78 12 1011 83 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_066100261 chr5:151614165-151648486 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 261 15 1039 85 3 56 0 CTB-113P19.1,FAT2,SPARC
SE_02_009500566 chr5:151618256-151649994 Sample_02_0095 Mammary gland MDA-MB-468 566 6 940 81 2 49 0 FAT2,SPARC
SE_02_127500753 chr5:151691457-151709586 Sample_02_1275 Prostate PC3_Vorinostat 753 16 500 51 4 31 0 CTB-113P19.1,ATOX1,SPARC,LOC100652758
SE_00_002500849 chr5:151694854-151700173 Sample_00_0025 Muscle of leg muscle-of-leg 849 1 159 21 1 27 0 SPARC
SE_00_004300755 chr5:151694933-151700449 Sample_00_0043 Stomach stomach_96d 755 1 163 22 1 27 0 SPARC
SE_02_155100125 chr5:151707979-151758596 Sample_02_1551 Gastrointestinal Stromal MaMel 125 17 1289 110 1 46 591 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_045300753 chr5:151716019-151744206 Sample_02_0453 Neuroblastoma SJNB3 753 8 703 78 1 23 73 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_026400132 chr5:151716604-151746734 Sample_02_0264 Skeletal muscle 7250-empty 132 3 758 82 1 30 157 ATOX1,SPARC,G3BP1
SE_02_047400583 chr5:151716909-151750273 Sample_02_0474 Fibroblast umbilical cord Fibroblast 583 7 845 85 1 30 157 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_050000958 chr5:151717411-151746772 Sample_02_0500 Fetal lung IMR90_#2 958 11 736 82 1 30 157 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_087900244 chr5:151717488-151746620 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 244 6 726 79 1 30 155 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_088100283 chr5:151717547-151746629 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 283 10 722 78 1 30 157 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_088300228 chr5:151717626-151746934 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 228 7 728 81 1 30 157 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_142900480 chr5:151717651-151758595 Sample_02_1429 Blood GM12878_WT 480 11 1024 92 1 46 591 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_143700598 chr5:151717751-151752661 Sample_02_1437 Liver LSEC-TNF 598 7 866 86 1 35 206 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_087800184 chr5:151717760-151746971 Sample_02_0878 Ovary SVOG3e cells_noDox_control 184 8 724 80 1 30 157 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_088200175 chr5:151717765-151746927 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 175 7 722 80 1 30 157 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_141600956 chr5:151717818-151746239 Sample_02_1416 Brain SF9402 956 4 701 76 1 24 91 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_114300156 chr5:151718129-151737847 Sample_02_1143 Peripheral nerve MPNST724_PRC2 WT 156 4 502 58 0 15 0 CTB-113P19.1,LOC100652758,ATOX1,G3BP1,SPARC
SE_02_088000260 chr5:151718560-151746315 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 260 10 691 75 1 28 110 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_032100224 chr5:151718731-151782400 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 224 5 1656 145 1 67 1088 ATOX1,G3BP1,SPARC
SE_02_032000251 chr5:151719158-151785005 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 251 6 1716 150 1 67 1088 ATOX1,G3BP1,SPARC
SE_02_094700397 chr5:151721243-151745297 Sample_02_0947 Tongue Cal27 397 5 592 71 1 23 73 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_094600565 chr5:151721939-151746729 Sample_02_0946 Tongue HN12 565 3 613 70 1 30 157 ATOX1,CTB-113P19.1,LOC100652758,G3BP1,SPARC
SE_02_042800237 chr5:151727608-151756828 Sample_02_0428 Kidney 12364284_VHL- 237 4 735 74 1 26 282 ATOX1,SPARC,G3BP1
SE_02_042900329 chr5:151728435-151756566 Sample_02_0429 Kidney 12364284_VHL+ 329 7 702 65 1 25 232 ATOX1,SPARC,G3BP1
SE_02_061500944 chr5:151728890-151751120 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 944 7 570 59 1 16 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_006900212 chr5:151728978-151746839 Sample_02_0069 Brain SF268 212 3 455 56 1 16 157 ATOX1,SPARC,G3BP1
SE_02_001100875 chr5:151729018-151757069 Sample_02_0011 Kidney A-498_wtVHL 875 5 709 67 1 26 311 ATOX1,SPARC,G3BP1
SE_02_152700708 chr5:151729168-151741698 Sample_02_1527 Embryo naive embryonic stem cell 708 6 321 43 0 8 0 LOC100652758,G3BP1,ATOX1,SPARC
SE_02_156801027 chr5:151729312-151746772 Sample_02_1568 Heart Cardiac progenitor cells 1027 5 446 55 1 16 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_015000578 chr5:151733067-151747605 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 578 2 358 40 1 16 157 ATOX1,SPARC,G3BP1
SE_02_135600697 chr5:151733244-151751113 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 697 4 448 41 1 16 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_008800565 chr5:151733300-151744287 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 565 5 261 31 1 9 73 ATOX1,SPARC,G3BP1
SE_02_157100560 chr5:151733303-151746115 Sample_02_1571 Fibroblast Fibroblast cells 560 4 311 34 1 10 75 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_060600687 chr5:151733331-151751141 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 687 7 446 41 1 16 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_156601002 chr5:151733382-151751910 Sample_02_1566 Dermal Dermal fibroblast 1002 8 461 42 1 21 202 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_063600622 chr5:151733396-151746072 Sample_02_0636 Skin BJ5ta 622 5 305 34 1 10 73 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_060500653 chr5:151733443-151751677 Sample_02_0605 Skin Skin Fibroblast_DMSO 653 7 450 41 1 16 164 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_063700572 chr5:151733444-151751121 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 572 9 436 40 1 16 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_009100336 chr5:151733484-151743763 Sample_02_0091 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_0 336 3 233 28 0 9 73 ATOX1,SPARC,G3BP1
SE_02_158300707 chr5:151733868-151749984 Sample_02_1583 Fetal lung IMR90_empty_GM 707 10 399 38 1 16 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_135500545 chr5:151733999-151751111 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 545 4 423 39 1 16 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_139900545 chr5:151734163-151749887 Sample_02_1399 Bone U2OS_siMLL3.1 545 9 390 38 1 16 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_043900253 chr5:151735364-151746859 Sample_02_0439 Bone Hu09 253 5 266 28 1 16 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_044100250 chr5:151735726-151746786 Sample_02_0441 Bone M112 250 7 262 28 1 16 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_028100396 chr5:151736377-151747735 Sample_02_0281 Bone U2OS 396 1 271 24 1 15 157 ATOX1,SPARC,G3BP1
SE_02_060900399 chr5:151736547-151747021 Sample_02_0609 Liposarcoma LPS141 399 3 253 23 1 15 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_077001347 chr5:151736630-151756582 Sample_02_0770 Ovary OVCA429_shLuc 1347 11 478 31 1 24 235 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_061000377 chr5:151736739-151746876 Sample_02_0610 Liposarcoma MLS 1765-92 377 3 244 23 1 15 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_143600715 chr5:151736981-151751157 Sample_02_1436 Liver LSEC-Ctrl 715 5 351 26 1 15 157 ATOX1,LOC100652758,G3BP1,SPARC
SE_02_143800761 chr5:151737044-151752426 Sample_02_1438 Liver LSEC 761 6 374 28 1 20 206 ATOX1,LOC100652758,G3BP1,SPARC
Genomic distribution of SEs associated with SPARC
Genome Browser

The strength of the tissue affected by the gene

Expression of SPARC

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)