SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000036565
Gene: SLC18A1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr8:20144855-20183206 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_093000080 chr8:20065908-20136642 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 80 50 2578 73 14 83 0 SLC18A1,ATP6V1B2
SE_02_092900953 chr8:20105989-20136500 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 953 27 1124 13 5 24 0 SLC18A1,ATP6V1B2
SE_02_031200294 chr8:20158254-20206790 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 294 3 1877 103 4 130 868 SLC18A1,ATP6V1B2,LZTS1
SE_02_031900400 chr8:20158760-20203725 Sample_02_0319 Neuroblastoma NB-EBc1 400 7 1754 101 3 128 840 SLC18A1,ATP6V1B2
SE_02_030400627 chr8:20160231-20185126 Sample_02_0304 Neuroblastoma N206 627 6 1080 93 2 63 687 SLC18A1,ATP6V1B2
SE_02_030800242 chr8:20161772-20199369 Sample_02_0308 Neuroblastoma SJNB1 242 4 1517 95 2 112 840 SLC18A1,ATP6V1B2
SE_02_029600570 chr8:20162374-20199615 Sample_02_0296 Neuroblastoma CLB-BER-Lud 570 6 1490 93 2 112 840 SLC18A1,ATP6V1B2
SE_01_002400568 chr8:20175169-20207631 Sample_01_0024 Blood CD14-positive-monocyte 568 5 1176 57 5 91 513 SLC18A1,ATP6V1B2,LZTS1
SE_02_008100450 chr8:20175315-20224122 Sample_02_0081 Blood Monocyte-derived_dendritic_cells 450 5 1648 68 10 145 1263 SLC18A1,ATP6V1B2,LZTS1
SE_02_010000605 chr8:20175592-20204283 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 605 3 1051 53 3 89 485 SLC18A1,ATP6V1B2
SE_00_000600934 chr8:20175728-20202565 Sample_00_0006 Blood CD14-positive-monocyte 934 3 995 51 3 85 485 SLC18A1,ATP6V1B2
SE_02_127800237 chr8:20184407-20239413 Sample_02_1278 Chordoma UCH1_DMSO_48h 237 8 1770 27 11 131 931 ATP6V1B2,LZTS1-AS1,SLC18A1,LZTS1
SE_02_010100752 chr8:20185064-20207360 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 752 3 738 9 3 61 181 ATP6V1B2,SLC18A1,LZTS1
SE_02_092800287 chr8:20185176-20206706 Sample_02_0928 Peripheral blood neutrophils_Ecoli 287 6 716 8 2 60 181 ATP6V1B2,LZTS1,SLC18A1
SE_02_010200509 chr8:20185560-20205234 Sample_02_0102 Peripheral blood Macrophages_GM-CSF_72h_IL4 509 2 656 6 1 59 181 ATP6V1B2,SLC18A1
SE_02_109800911 chr8:20186042-20203570 Sample_02_1098 Blood THP1_DMSO_noPMA 911 8 589 5 1 57 153 ATP6V1B2,SLC18A1
SE_02_058600567 chr8:20186109-20234709 Sample_02_0586 Chordal patient-derived chordoma MGH_4 567 20 1548 25 11 122 931 ATP6V1B2,LZTS1-AS1,SLC18A1,LZTS1
SE_02_141001403 chr8:20186510-20232489 Sample_02_1410 Brain GSC6 1403 8 1445 22 11 117 931 ATP6V1B2,LZTS1-AS1,SLC18A1,LZTS1
SE_02_059401304 chr8:20186535-20247886 Sample_02_0594 iPSC-derived neural progenitors 1304 11 2007 37 11 143 1349 ATP6V1B2,LZTS1,LZTS1-AS1,SLC18A1
SE_02_149400432 chr8:20186757-20203812 Sample_02_1494 Other monocyte-derived dendritic cells_0h 432 9 570 5 1 57 153 ATP6V1B2,SLC18A1
SE_02_117500617 chr8:20186831-20203260 Sample_02_1175 Brain GBM03 617 5 557 5 1 57 153 ATP6V1B2,SLC18A1
SE_02_098901613 chr8:20186914-20224513 Sample_02_0989 Kidney kidney cortex_WT 1613 12 1194 19 9 113 931 ATP6V1B2,LZTS1,SLC18A1
SE_02_146800806 chr8:20196753-20206484 Sample_02_1468 Blood HUDEP-2_WT 806 2 312 3 2 47 181 ATP6V1B2,LZTS1,SLC18A1
SE_01_002500265 chr8:20216932-20239347 Sample_01_0025 Haematopoietic and lymphoid tissue blood DND-41 265 5 718 9 3 34 423 ATP6V1B2,SLC18A1,LZTS1
SE_02_003100628 chr8:20217812-20243906 Sample_02_0031 Haematopoietic and lymphoid tissue blood Jurkat 628 5 846 15 3 35 381 ATP6V1B2,SLC18A1,LZTS1
SE_02_022300149 chr8:20218145-20245910 Sample_02_0223 Haematopoietic and lymphoid tissue MOLT4_1 149 3 918 20 3 39 367 ATP6V1B2,SLC18A1,LZTS1
SE_02_121700192 chr8:20218278-20243799 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 192 11 831 15 3 31 355 ATP6V1B2,LZTS1-AS1,SLC18A1,LZTS1
SE_02_121600202 chr8:20218429-20243920 Sample_02_1216 Blood Jurkat ZBTB1 KO 202 8 835 15 3 31 343 ATP6V1B2,LZTS1-AS1,SLC18A1,LZTS1
SE_02_024700502 chr8:20219189-20244285 Sample_02_0247 Haematopoietic and lymphoid tissue MOLT4_2 502 4 830 16 3 31 264 ATP6V1B2,SLC18A1,LZTS1
SE_02_121500292 chr8:20219397-20237063 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 292 6 568 9 3 28 238 ATP6V1B2,LZTS1-AS1,SLC18A1,LZTS1
SE_02_158500453 chr8:20219860-20235240 Sample_02_1585 Blood SupB15 DMSO 453 8 490 9 3 28 194 ATP6V1B2,LZTS1-AS1,SLC18A1,LZTS1
SE_02_022500364 chr8:20219865-20244166 Sample_02_0225 Haematopoietic and lymphoid tissue PF-382 364 4 807 15 3 31 194 ATP6V1B2,SLC18A1,LZTS1
SE_02_121400159 chr8:20219929-20243568 Sample_02_1214 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1 159 5 783 13 3 31 188 ATP6V1B2,LZTS1-AS1,SLC18A1,LZTS1
SE_02_156000143 chr8:20220362-20330359 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 143 27 3491 120 16 232 1807 ATP6V1B2,LZTS1,LZTS1-AS1,SLC18A1
SE_02_031200346 chr8:20221455-20312165 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 346 12 2971 112 15 203 1703 ATP6V1B2,LZTS1,SLC18A1
SE_02_012800043 chr8:20221685-20304469 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 43 19 2723 112 15 181 1678 ATP6V1B2,LZTS1,SLC18A1
SE_02_144500238 chr8:20222213-20313422 Sample_02_1445 Adipose SW872_TAZ4SA 238 17 2986 112 15 206 1658 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_130400338 chr8:20222301-20282055 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 338 21 1970 98 12 121 1436 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_111900321 chr8:20222561-20304732 Sample_02_1119 Blood KBM7 321 32 2714 112 15 181 1658 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_030400058 chr8:20222618-20330617 Sample_02_0304 Neuroblastoma N206 58 13 3434 119 16 224 1658 LZTS1,SLC18A1,ATP6V1B2
SE_02_003801305 chr8:20222792-20239585 Sample_02_0038 Embryo DE 1305 4 574 8 3 20 0 SLC18A1,ATP6V1B2,LZTS1
SE_02_110100195 chr8:20222955-20313726 Sample_02_1101 Brain KELLY 195 41 2966 111 15 208 1658 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_01_005500369 chr8:20223588-20246973 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 369 3 803 18 3 29 208 LZTS1,SLC18A1,ATP6V1B2
SE_02_115300298 chr8:20223896-20285098 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 298 10 2022 104 14 126 1436 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_115400343 chr8:20223973-20285286 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 343 12 2031 103 14 126 1436 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_130200444 chr8:20223981-20271777 Sample_02_1302 Lymphoma RL DMSO 444 9 1570 54 5 110 1358 LZTS1,ATP6V1B2,LZTS1-AS1,SLC18A1
SE_02_121800195 chr8:20223985-20277891 Sample_02_1218 Bone marrow Daudi 195 21 1767 83 12 112 1436 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_130300312 chr8:20224006-20278065 Sample_02_1303 Lymphoma RL_tazemetostat 312 23 1773 86 12 112 1436 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_110800098 chr8:20224041-20313372 Sample_02_1108 Brain SK-N-BE_2_-C 98 29 2930 110 15 204 1658 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_097000122 chr8:20224049-20304691 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 122 25 2665 110 15 179 1658 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_104600608 chr8:20225383-20395446 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 608 44 5364 132 20 312 1658 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_110000070 chr8:20230659-20330609 Sample_02_1100 Brain COG-N-415 70 35 3183 115 14 219 1658 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_104701855 chr8:20231395-20273640 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1855 16 1403 58 5 107 1358 LZTS1,ATP6V1B2,LZTS1-AS1,SLC18A1
SE_02_155300232 chr8:20231455-20314345 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 232 32 2713 108 12 205 1658 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_004300374 chr8:20231961-20239779 Sample_02_0043 Embryo endodermal CyT49_ES_D2 374 3 298 3 0 14 0 SLC18A1,ATP6V1B2,LZTS1
SE_02_106400551 chr8:20231999-20244014 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 551 5 434 9 0 15 0 ATP6V1B2,LZTS1-AS1,SLC18A1,LZTS1
SE_02_110600232 chr8:20232001-20313376 Sample_02_1106 Brain NGP 232 34 2679 107 12 200 1658 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_110500395 chr8:20232021-20313241 Sample_02_1105 Brain NBL-S 395 33 2674 107 12 200 1658 LZTS1,LZTS1-AS1,ATP6V1B2,SLC18A1
SE_02_096200724 chr8:20232042-20271113 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 724 13 1290 51 2 105 1358 LZTS1,ATP6V1B2,LZTS1-AS1,SLC18A1
Genomic distribution of SEs associated with SLC18A1
Genome Browser

The strength of the tissue affected by the gene

Expression of SLC18A1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)