SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000166922
Gene: SCG5 Gene type: protein_coding
Strand: + External links:
Genomic region: chr15:32641676-32697098 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_057500062 chr15:32505938-32593816 Sample_02_0575 Blood MOLM13_sgLKB1e2 62 29 679 43 0 0 752 WHAMMP1,GOLGA8N,LOC100996255,SCG5,ARHGAP11A
SE_02_057700041 chr15:32516693-32592896 Sample_02_0577 Blood MOLM13_empty 41 20 556 35 0 0 752 WHAMMP1,LOC100996255,SCG5,ARHGAP11A
SE_02_099400178 chr15:32560219-32593720 Sample_02_0994 Blood MOLM13_SIK3TQ 178 11 248 9 0 0 258 GOLGA8N,LOC100996255,SCG5,ARHGAP11A,WHAMMP1
SE_02_057400193 chr15:32560234-32593841 Sample_02_0574 Blood MOLM-13_sgNeg2 193 15 249 9 0 0 258 GOLGA8N,LOC100996255,SCG5,ARHGAP11A,WHAMMP1
SE_02_058200115 chr15:32560351-32593207 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 115 8 236 9 0 0 258 LOC100996255,SCG5,ARHGAP11A,WHAMMP1
SE_02_057800238 chr15:32560356-32592721 Sample_02_0578 Blood MOLM-13_sgSIK3e4 238 11 231 9 0 0 258 LOC100996255,SCG5,ARHGAP11A,WHAMMP1
SE_02_099300175 chr15:32560403-32592844 Sample_02_0993 Blood MOLM-13_empty 175 14 232 9 0 0 258 LOC100996255,SCG5,ARHGAP11A,WHAMMP1
SE_02_099500173 chr15:32560464-32592834 Sample_02_0995 Blood MOLM-13_empty vector 173 15 232 9 0 0 258 LOC100996255,SCG5,ARHGAP11A,WHAMMP1
SE_02_058100135 chr15:32560632-32592971 Sample_02_0581 Blood MOLM13_empty_HG 135 8 232 9 0 0 258 LOC100996255,SCG5,ARHGAP11A,WHAMMP1
SE_02_134100128 chr15:32564619-32592956 Sample_02_1341 Blood MV411 128 4 204 9 0 0 258 LOC100996255,SCG5,ARHGAP11A,WHAMMP1
SE_02_046100308 chr15:32569028-32592054 Sample_02_0461 Blood MV-4-11-B cells 308 7 184 8 0 0 258 LOC100996255,SCG5,ARHGAP11A,WHAMMP1
SE_02_017600485 chr15:32610533-32621197 Sample_02_0176 Peripheral blood LOUCY 485 1 258 30 0 29 302 ARHGAP11A,SCG5
SE_02_023300506 chr15:32610745-32631274 Sample_02_0233 Tonsil Th1 506 8 485 51 1 57 475 ARHGAP11A,SCG5
SE_02_033600502 chr15:32610781-32621447 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 502 1 256 30 0 29 302 ARHGAP11A,SCG5
SE_02_028400664 chr15:32612028-32617489 Sample_02_0284 Pelvis patient 119 664 1 142 14 0 20 260 ARHGAP11A,SCG5
SE_02_025900377 chr15:32612064-32621016 Sample_02_0259 Lung NCI-H1299_EGFP-NEO_reporter_cells_SAHA 377 2 225 27 0 29 302 ARHGAP11A,SCG5
SE_02_022100385 chr15:32612085-32617534 Sample_02_0221 Blood CCRF-CEM 385 1 141 14 0 20 260 ARHGAP11A,SCG5
SE_02_033200411 chr15:32612102-32623563 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 411 2 282 28 0 32 322 ARHGAP11A,SCG5
SE_02_042200193 chr15:32612111-32633128 Sample_02_0422 Lung NCI-H1299_EGFP-NEO_reporter_cells_DACSB 193 4 505 52 1 61 497 ARHGAP11A,SCG5
SE_02_034300515 chr15:32612116-32619885 Sample_02_0343 Bone marrow HSPC_A0 515 2 196 23 0 27 260 ARHGAP11A,SCG5
SE_02_024700417 chr15:32612133-32620442 Sample_02_0247 Haematopoietic and lymphoid tissue MOLT4_2 417 2 207 24 0 29 302 ARHGAP11A,SCG5
SE_02_036200639 chr15:32612134-32617535 Sample_02_0362 Haematopoietic and lymphoid tissue REH 639 1 132 13 0 20 260 ARHGAP11A,SCG5
SE_02_033300395 chr15:32612149-32620863 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 395 1 215 26 0 29 302 ARHGAP11A,SCG5
SE_02_025600798 chr15:32612169-32621292 Sample_02_0256 Peripheral blood MV411 798 2 217 25 0 29 302 ARHGAP11A,SCG5
SE_02_014400464 chr15:32612270-32621286 Sample_02_0144 Peripheral blood MV411_DMSO 464 1 216 25 0 29 302 ARHGAP11A,SCG5
SE_02_043300258 chr15:32612291-32624594 Sample_02_0433 Lung NCI-H1299_EGFP-NEO_reporter_cells_DAC 258 2 299 31 0 42 363 ARHGAP11A,SCG5
SE_02_034200679 chr15:32612324-32620454 Sample_02_0342 Liver HSPCs_F0 679 2 203 23 0 29 302 ARHGAP11A,SCG5
SE_02_043100405 chr15:32612329-32620581 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 405 2 204 24 0 29 302 ARHGAP11A,SCG5
SE_02_032400261 chr15:32612359-32624526 Sample_02_0324 Colon SW48 261 2 297 31 0 42 360 ARHGAP11A,SCG5
SE_02_012800469 chr15:32612361-32620583 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 469 4 204 24 0 29 302 ARHGAP11A,SCG5
SE_02_026300665 chr15:32612391-32620623 Sample_02_0263 Osteoblastic hFOB_undifferentiated 665 2 205 24 0 29 302 ARHGAP11A,SCG5
SE_02_010000529 chr15:32612550-32616901 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 529 1 112 12 0 20 260 ARHGAP11A,SCG5
SE_02_011001089 chr15:32612554-32621332 Sample_02_0110 Ovaries IOE11 1089 1 214 25 0 29 302 ARHGAP11A,SCG5
SE_02_017201250 chr15:32612562-32631236 Sample_02_0172 Lung IMR-90_quiescent 1250 2 442 46 1 57 475 ARHGAP11A,SCG5
SE_02_033100229 chr15:32612682-32620925 Sample_02_0331 Haematopoietic and lymphoid tissue MOLM14_untreated 229 1 205 25 0 29 302 ARHGAP11A,SCG5
SE_02_026200680 chr15:32612689-32617560 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 680 1 124 13 0 20 260 ARHGAP11A,SCG5
SE_02_025500548 chr15:32612696-32620012 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 548 3 186 22 0 28 261 ARHGAP11A,SCG5
SE_02_001600540 chr15:32612702-32618771 Sample_02_0016 Blood erythroblasts 540 1 156 17 0 25 260 ARHGAP11A,SCG5
SE_02_033700255 chr15:32612711-32620826 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 255 2 203 24 0 29 302 ARHGAP11A,SCG5
SE_02_005800437 chr15:32612712-32617607 Sample_02_0058 Haematopoietic and lymphoid tissue blood WT/Jurkat-11bp 437 1 125 14 0 20 260 ARHGAP11A,SCG5
SE_02_003100414 chr15:32612732-32617586 Sample_02_0031 Haematopoietic and lymphoid tissue blood Jurkat 414 1 125 14 0 20 260 ARHGAP11A,SCG5
SE_02_025800268 chr15:32612794-32621087 Sample_02_0258 Lung NCI-H1299_EGFP-NEO_reporter_cells_DMSO 268 3 204 25 0 29 302 ARHGAP11A,SCG5
SE_02_026000369 chr15:32612797-32620466 Sample_02_0260 Lung NCI-H1299_EGFP-NEO_reporter_cells_SB939 369 4 195 23 0 29 302 ARHGAP11A,SCG5
SE_02_010700756 chr15:32612803-32618837 Sample_02_0107 Endometrium EEC16 756 1 155 17 0 25 260 ARHGAP11A,SCG5
SE_02_021000838 chr15:32612806-32620671 Sample_02_0210 Lung MRC-5_N_1DPT 838 3 197 24 0 29 302 ARHGAP11A,SCG5
SE_03_001400461 chr15:32612814-32620895 Sample_03_0014 Lung A549_dexamethasone_2h 461 1 203 25 0 29 302 ARHGAP11A,SCG5
SE_02_040200475 chr15:32612818-32620010 Sample_02_0402 Mammary gland SUM159PT-ZR-75-1 475 1 184 22 0 28 261 ARHGAP11A,SCG5
SE_02_022500358 chr15:32612821-32617508 Sample_02_0225 Haematopoietic and lymphoid tissue PF-382 358 1 120 12 0 20 260 ARHGAP11A,SCG5
SE_02_032300281 chr15:32612863-32620678 Sample_02_0323 Colon RKO 281 1 197 24 0 29 302 ARHGAP11A,SCG5
SE_02_005701136 chr15:32612869-32625236 Sample_02_0057 Mammary gland vHMEC 1136 2 306 33 0 48 377 ARHGAP11A,SCG5
SE_02_011100818 chr15:32612927-32618715 Sample_02_0111 Ovaries IOE4 818 1 153 17 0 25 260 ARHGAP11A,SCG5
SE_02_022300261 chr15:32612962-32617815 Sample_02_0223 Haematopoietic and lymphoid tissue MOLT4_1 261 1 129 14 0 20 260 ARHGAP11A,SCG5
SE_01_003701267 chr15:32612982-32616860 Sample_01_0037 Liver hepatocyte 1267 1 108 12 0 20 260 ARHGAP11A,SCG5
SE_02_026400440 chr15:32612992-32617125 Sample_02_0264 Skeletal muscle 7250-empty 440 1 112 12 0 20 260 ARHGAP11A,SCG5
SE_02_026500602 chr15:32613049-32617274 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 602 1 115 12 0 20 260 ARHGAP11A,SCG5
SE_02_028000396 chr15:32613058-32618847 Sample_02_0280 Mammary gland SUM159_DMSO_24h 396 1 155 17 0 25 260 ARHGAP11A,SCG5
SE_02_024400491 chr15:32613083-32620614 Sample_02_0244 Foreskin foreskin_D11 491 2 196 24 0 29 302 ARHGAP11A,SCG5
SE_00_002501096 chr15:32613161-32616655 Sample_00_0025 Muscle of leg muscle-of-leg 1096 1 97 12 0 20 260 ARHGAP11A,SCG5
SE_02_013100856 chr15:32613165-32617171 Sample_02_0131 Lung 1015_PT 856 1 109 12 0 20 260 ARHGAP11A,SCG5
SE_01_001200073 chr15:32613204-32618642 Sample_01_0012 Lung A549_dexamethasone_1h 73 1 147 16 0 25 260 ARHGAP11A,SCG5
SE_02_035900723 chr15:32613210-32617051 Sample_02_0359 Colon Colo741 723 1 107 12 0 20 260 ARHGAP11A,SCG5
SE_01_003600422 chr15:32613228-32618389 Sample_01_0036 Cervix HeLa-S3 422 1 142 15 0 25 260 ARHGAP11A,SCG5
SE_01_000600310 chr15:32613228-32618730 Sample_01_0006 Lung A549_ethanol_1h 310 1 151 17 0 25 260 ARHGAP11A,SCG5
SE_02_036300534 chr15:32613240-32617419 Sample_02_0363 Haematopoietic and lymphoid tissue 697 534 1 116 12 0 20 260 ARHGAP11A,SCG5
SE_02_010800288 chr15:32613245-32617641 Sample_02_0108 Fallopian tube FT246 288 1 124 14 0 20 260 ARHGAP11A,SCG5
SE_00_001500727 chr15:32613260-32617565 Sample_00_0015 Lung IMR-90 727 1 120 14 0 20 260 ARHGAP11A,SCG5
SE_02_016500287 chr15:32613285-32618159 Sample_02_0165 Lung H2087_LCC2 287 2 137 14 0 25 260 ARHGAP11A,SCG5
SE_02_027600455 chr15:32613377-32617797 Sample_02_0276 Retina FW15 455 1 124 14 0 20 260 ARHGAP11A,SCG5
SE_01_004100808 chr15:32613396-32617580 Sample_01_0041 Skin keratinocyte 808 1 118 14 0 20 260 ARHGAP11A,SCG5
SE_02_040100520 chr15:32613423-32618707 Sample_02_0401 Mammary gland SUM159PT-T47D 520 2 146 16 0 25 260 ARHGAP11A,SCG5
SE_00_003900886 chr15:32613435-32616622 Sample_00_0039 Spleen spleen_3y 886 1 92 11 0 20 260 ARHGAP11A,SCG5
SE_00_002600723 chr15:32613468-32616701 Sample_00_0026 Muscle of trunk muscle-of-trunk 723 1 93 11 0 20 260 ARHGAP11A,SCG5
SE_01_003900303 chr15:32613486-32618119 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 303 2 130 12 0 25 260 ARHGAP11A,SCG5
SE_02_040700416 chr15:32613495-32621068 Sample_02_0407 Brain BT16 416 1 193 23 0 29 302 ARHGAP11A,SCG5
SE_02_042000325 chr15:32613506-32621233 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 325 2 195 23 0 29 302 ARHGAP11A,SCG5
SE_02_018200816 chr15:32613628-32617577 Sample_02_0182 melanoma LOX-IMVI 816 1 109 10 0 20 260 ARHGAP11A,SCG5
SE_02_033900419 chr15:32613700-32617569 Sample_02_0339 Neuroblastoma NGP 419 1 107 9 0 20 260 ARHGAP11A,SCG5
SE_02_022000362 chr15:32613730-32617613 Sample_02_0220 Brain BE2C_1 362 1 105 9 0 20 260 ARHGAP11A,SCG5
SE_02_077600495 chr15:32641085-32711606 Sample_02_0776 Pancreas EndoC-BH1 495 16 2036 155 12 284 664 SCG5,ARHGAP11A,LOC100131315,GREM1
SE_02_123700990 chr15:32641341-32676575 Sample_02_1237 Skin MKL2_virus_positive 990 9 919 93 4 112 427 SCG5,ARHGAP11A,LOC100131315,GREM1
SE_02_076600233 chr15:32650019-32715435 Sample_02_0766 Ovary PEO1 233 25 1915 136 11 259 490 SCG5,ARHGAP11A,LOC100131315,GREM1
SE_02_076301036 chr15:32650903-32733422 Sample_02_0763 Podocyte podocyte_DEX 1036 17 2393 175 15 394 1351 GREM1,SCG5,LOC100131315,ARHGAP11A
SE_02_076200820 chr15:32651765-32734329 Sample_02_0762 Podocyte podocyte_CTL 820 20 2400 175 17 409 1402 GREM1,SCG5,LOC100131315,ARHGAP11A
SE_02_156600217 chr15:32658999-32789107 Sample_02_1566 Dermal Dermal fibroblast 217 33 3905 250 24 535 2362 GREM1,LOC100131315,FMN1,SCG5,ARHGAP11A
SE_02_060600933 chr15:32659064-32748112 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 933 23 2572 166 17 424 1451 GREM1,SCG5,LOC100131315,ARHGAP11A
SE_02_060500984 chr15:32659165-32748068 Sample_02_0605 Skin Skin Fibroblast_DMSO 984 18 2566 166 17 424 1451 GREM1,SCG5,LOC100131315,ARHGAP11A
SE_02_069800412 chr15:32663252-32693061 Sample_02_0698 Lung NCI-H1048-cas9_sgPOU2F3 412 7 811 60 3 158 414 SCG5,ARHGAP11A,LOC100131315,GREM1
SE_02_068500703 chr15:32668372-32692709 Sample_02_0685 Lung NCI-H1048_no infection 703 8 686 52 3 134 414 SCG5,LOC100131315,GREM1,ARHGAP11A
SE_02_113701408 chr15:32681787-32707838 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1408 9 826 44 6 141 171 SCG5,LOC100131315,GREM1
SE_02_081101162 chr15:32682234-32707857 Sample_02_0811 Thyroid BCPAP 1162 11 821 44 6 141 171 SCG5,LOC100131315,GREM1
Genomic distribution of SEs associated with SCG5
Genome Browser

The strength of the tissue affected by the gene

Expression of SCG5

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)