SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000251733
Gene: SCARNA8 Gene type: scaRNA
Strand: - External links:
Genomic region: chr9:19063656-19063786 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_013900251 chr9:19008384-19031397 Sample_02_0139 Liver RT236 251 4 930 138 2 41 0 FAM154A,SCARNA8,RRAGA
SE_02_029600635 chr9:19047212-19051821 Sample_02_0296 Neuroblastoma CLB-BER-Lud 635 1 133 13 0 65 270 RRAGA,FAM154A,SCARNA8
SE_02_066000820 chr9:19072236-19130885 Sample_02_0660 Mammary gland MCF10DCIS 820 14 2052 207 2 96 1241 HAUS6,PLIN2,SAXO1,RRAGA,SCARNA8
SE_02_066100223 chr9:19074645-19137922 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 223 16 2235 193 2 98 1329 HAUS6,PLIN2,SAXO1,RRAGA,SCARNA8
SE_02_104900820 chr9:19079755-19131596 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 820 27 1798 168 2 91 1262 HAUS6,PLIN2,SAXO1,RRAGA,SCARNA8
SE_02_101701042 chr9:19081525-19131628 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1042 6 1731 158 2 86 1210 HAUS6,PLIN2,SAXO1,RRAGA,SCARNA8
SE_02_146800610 chr9:19084011-19128393 Sample_02_1468 Blood HUDEP-2_WT 610 11 1531 141 2 79 941 HAUS6,PLIN2,RRAGA,SCARNA8,SAXO1
SE_02_157900334 chr9:19084693-19139133 Sample_02_1579 Renal 786-M1A 334 15 1883 146 2 87 1179 HAUS6,PLIN2,RRAGA,SCARNA8,SAXO1
SE_02_146600106 chr9:19085699-19174747 Sample_02_1466 Blood HUDEP-2_BCL11AKO 106 13 3167 203 5 109 1242 HAUS6,PLIN2,RRAGA,SCARNA8,SAXO1
SE_02_146700564 chr9:19086418-19128549 Sample_02_1467 Blood HUDEP-2_LRFKO 564 9 1465 130 2 79 941 HAUS6,PLIN2,RRAGA,SCARNA8,SAXO1
SE_02_149200820 chr9:19087137-19137995 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 820 12 1777 137 2 82 1138 HAUS6,PLIN2,RRAGA,SCARNA8,SAXO1
SE_02_076200197 chr9:19087209-19185512 Sample_02_0762 Podocyte podocyte_CTL 197 24 3442 213 4 117 1199 HAUS6,PLIN2,SCARNA8,DENND4C,SAXO1,RRAGA
SE_02_133200102 chr9:19087334-19184333 Sample_02_1332 Blood Monomac6_CTRL 102 19 3405 212 4 106 1182 HAUS6,PLIN2,SCARNA8,DENND4C,SAXO1,RRAGA
SE_02_057601044 chr9:19095069-19103702 Sample_02_0576 Blood HEL_sgLKB1e2 1044 4 346 29 0 10 187 HAUS6,RRAGA,SCARNA8,SAXO1,PLIN2
SE_02_058001062 chr9:19095082-19103660 Sample_02_0580 Blood HEL_sgSIK3e4 1062 3 345 29 0 10 187 HAUS6,RRAGA,SCARNA8,SAXO1,PLIN2
SE_02_144500572 chr9:19100628-19143067 Sample_02_1445 Adipose SW872_TAZ4SA 572 8 1406 73 1 67 993 HAUS6,PLIN2,SCARNA8
SE_01_009700550 chr9:19102273-19129704 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 550 7 869 61 1 60 769 HAUS6,PLIN2,SCARNA8
SE_01_009400863 chr9:19103959-19130242 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 863 5 811 58 1 60 658 PLIN2,SCARNA8,HAUS6
SE_02_117400569 chr9:19104369-19130696 Sample_02_1174 Brain GBM02 569 7 814 59 1 60 713 PLIN2,SCARNA8,HAUS6
SE_02_093700887 chr9:19104386-19130196 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 887 9 796 57 1 60 655 PLIN2,SCARNA8,HAUS6
SE_01_007200480 chr9:19104453-19185901 Sample_01_0072 Breast epithelium breast-epithelium 480 12 2771 141 4 97 894 PLIN2,SCARNA8,HAUS6
SE_02_131100513 chr9:19104656-19186621 Sample_02_1311 Bone marrow HDMSCs 513 12 2783 141 4 98 894 PLIN2,DENND4C,SCARNA8,HAUS6
SE_02_077500015 chr9:19106552-19257064 Sample_02_0775 Pancreas EndoC-BH1_SE 15 64 5204 280 12 114 1063 DENND4C,PLIN2,SCARNA8,HAUS6
SE_02_046500044 chr9:19107497-19188274 Sample_02_0465 Adipose subcutaneous adipocytes 44 50 2732 135 4 102 894 PLIN2,DENND4C,SCARNA8,HAUS6,RPS6,RRAGA
SE_01_006900507 chr9:19107668-19185583 Sample_01_0069 Adrenal gland adrenal-gland 507 10 2648 132 4 97 894 PLIN2,SCARNA8,HAUS6
SE_02_026800104 chr9:19110002-19139586 Sample_02_0268 Kidney A-498 104 12 961 51 0 61 831 PLIN2,SCARNA8,HAUS6
SE_02_001100151 chr9:19110126-19187103 Sample_02_0011 Kidney A-498_wtVHL 151 22 2619 127 3 99 894 PLIN2,SCARNA8,HAUS6
SE_02_001000040 chr9:19110180-19187065 Sample_02_0010 Kidney A-498_emptyvector 40 17 2615 126 3 99 894 PLIN2,SCARNA8,HAUS6
SE_02_158000263 chr9:19110462-19185128 Sample_02_1580 Renal 786-O 263 36 2547 125 3 96 894 PLIN2,DENND4C,SCARNA8,HAUS6
SE_02_076300441 chr9:19110493-19185432 Sample_02_0763 Podocyte podocyte_DEX 441 16 2547 125 3 96 894 PLIN2,DENND4C,SCARNA8,HAUS6
SE_02_158200445 chr9:19110587-19186842 Sample_02_1582 Renal OS-RC-2 445 25 2593 125 3 99 894 PLIN2,DENND4C,SCARNA8,HAUS6
SE_02_158100553 chr9:19111180-19186897 Sample_02_1581 Renal OS-LM1 553 25 2577 125 3 99 894 PLIN2,DENND4C,SCARNA8,HAUS6
SE_02_046600110 chr9:19111251-19186284 Sample_02_0466 Adipose visceral adipocytes 110 47 2556 125 3 96 894 PLIN2,DENND4C,SCARNA8,HAUS6,RPS6,RRAGA
SE_02_019400200 chr9:19112200-19128724 Sample_02_0194 Kidney Patient_x750T 200 2 494 37 0 53 593 PLIN2,SCARNA8,HAUS6
SE_02_028600260 chr9:19112711-19184829 Sample_02_0286 Liver HuH7_IL-1alpha_1h 260 9 2470 122 3 96 894 PLIN2,SCARNA8,HAUS6
SE_02_032700118 chr9:19113318-19174695 Sample_02_0327 Liver hepatocytes_d6 118 10 2139 104 3 82 894 PLIN2,SCARNA8,HAUS6
SE_02_032500088 chr9:19113573-19174490 Sample_02_0325 Liver hepatocytes_d1 88 13 2128 104 3 82 894 PLIN2,SCARNA8,HAUS6
SE_01_008200069 chr9:19113575-19194433 Sample_01_0082 Right lobe of liver right-lobe-of-liver 69 10 2751 139 3 103 894 PLIN2,SCARNA8,HAUS6
SE_02_048101463 chr9:19113622-19138999 Sample_02_0481 Mammary gland MDA-MB231 1463 11 819 45 0 60 831 PLIN2,SCARNA8,HAUS6
SE_02_032600151 chr9:19113736-19174683 Sample_02_0326 Liver hepatocytes_d3 151 10 2128 104 3 82 894 PLIN2,SCARNA8,HAUS6
SE_02_145900087 chr9:19113763-19185544 Sample_02_1459 Pancreas THP1+PANC1_shCTCF 87 13 2459 121 3 95 894 PLIN2,DENND4C,SCARNA8,HAUS6
Genomic distribution of SEs associated with SCARNA8
Genome Browser

The strength of the tissue affected by the gene

Expression of SCARNA8

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)