SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000074660
Gene: SCARF1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:1633858-1645744 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_008100054 chr17:1532941-1630517 Sample_02_0081 Blood Monocyte-derived_dendritic_cells 54 16 3447 211 3 377 3032 PITPNA,SLC43A2,RILP,MYO1C,LOC100306951,INPP5K,SCARF1
SE_02_010300031 chr17:1554474-1630484 Sample_02_0103 Peripheral blood Macrophages_GM-CSF_72h_TNF-a_PGE2_Pam3CSK4 31 15 2736 157 3 292 2513 PITPNA,SLC43A2,RILP,SCARF1,LOC100306951,INPP5K
SE_02_034200648 chr17:1554595-1612835 Sample_02_0342 Liver HSPCs_F0 648 12 2113 124 1 198 1871 PITPNA,SLC43A2,RILP,SCARF1,LOC100306951,INPP5K
SE_01_002500261 chr17:1554703-1630687 Sample_01_0025 Haematopoietic and lymphoid tissue blood DND-41 261 24 2730 156 2 292 2513 PITPNA,SLC43A2,RILP,SCARF1,LOC100306951,INPP5K
SE_02_093000283 chr17:1554892-1631618 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 283 33 2755 156 2 293 2513 PITPNA,SLC43A2,RILP,PITPNA-AS1,INPP5K,SCARF1,SERPINF2,TLCD2,MYO1C
SE_02_092900309 chr17:1555237-1626301 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 309 25 2584 151 2 231 2147 PITPNA,SLC43A2,RILP,PITPNA-AS1,INPP5K,SCARF1,SERPINF2,TLCD2,MYO1C
SE_00_005500624 chr17:1555542-1626382 Sample_00_0055 Spleen spleen 34y 624 14 2583 153 2 228 2147 PITPNA,SLC43A2,RILP,PITPNA-AS1,INPP5K,SCARF1,SERPINF2,MYO1C
SE_02_022600444 chr17:1560742-1596005 Sample_02_0226 Blood KOPTK1 444 5 1301 71 0 131 1670 PITPNA,SLC43A2,LOC100306951,INPP5K,SCARF1
SE_02_077500663 chr17:1564563-1624768 Sample_02_0775 Pancreas EndoC-BH1_SE 663 35 2269 118 1 163 1858 SLC43A2,PITPNA,RILP,PITPNA-AS1,INPP5K,SCARF1
SE_02_012800387 chr17:1566402-1608208 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 387 26 1639 78 0 129 1582 SLC43A2,RILP,SCARF1,LOC100306951,INPP5K,PITPNA
SE_02_036800409 chr17:1571852-1605764 Sample_02_0368 Skeletal muscle NS134 409 7 1353 60 0 111 1582 SLC43A2,RILP,PITPNA,SCARF1
SE_01_008500712 chr17:1573590-1630550 Sample_01_0085 Stomach stomach 712 8 2164 107 1 224 2224 SLC43A2,RILP,PITPNA,SCARF1
SE_02_036000167 chr17:1573937-1608585 Sample_02_0360 Haematopoietic and lymphoid tissue SEM 167 7 1395 65 0 125 1582 SLC43A2,RILP,PITPNA,SCARF1
SE_02_034400314 chr17:1574665-1607317 Sample_02_0344 Blood CD34 314 4 1331 61 0 118 1482 SLC43A2,RILP,PITPNA,SCARF1
SE_02_088500909 chr17:1574758-1618063 Sample_02_0885 Blood NALM6_2 909 7 1719 90 0 141 1735 SLC43A2,PITPNA,RILP,SCARF1
SE_02_010000448 chr17:1605479-1630552 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 448 4 861 48 1 116 642 SLC43A2,RILP,PITPNA,SCARF1
SE_00_000600666 chr17:1605630-1609397 Sample_00_0006 Blood CD14-positive-monocyte 666 1 133 8 0 17 0 SLC43A2,RILP,PITPNA,SCARF1
SE_01_002400389 chr17:1605785-1648998 Sample_01_0024 Blood CD14-positive-monocyte 389 7 1480 78 2 204 2800 SCARF1,SLC43A2,RILP,PRPF8,PITPNA
SE_02_003901224 chr17:1620229-1650675 Sample_02_0039 Embryo AFG 1224 5 1017 41 2 181 2930 SCARF1,SLC43A2,PRPF8,RILP
SE_01_005200551 chr17:1624689-1630929 Sample_01_0052 Blood neutrophil 551 1 191 4 0 65 366 SLC43A2,RILP,SCARF1
SE_01_008300727 chr17:1643700-1671216 Sample_01_0083 Sigmoid colon sigmoid-colon 727 2 909 62 2 205 2570 SCARF1,PRPF8,RILP,SLC43A2,TLCD2,MIR22,WDR81,C17ORF91
Genomic distribution of SEs associated with SCARF1
Genome Browser

The strength of the tissue affected by the gene

Expression of SCARF1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)