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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000114993
Gene: RTKN Gene type: protein_coding
Strand: - External links:
Genomic region: chr2:74425835-74442422 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_120500631 chr2:74364249-74392170 Sample_02_1205 Brain NB3 631 9 809 48 0 233 2079 DCTN1,DCTN1-AS1,SLC4A5,C2ORF81,RTKN,WDR54
SE_02_003800997 chr2:74373600-74392789 Sample_02_0038 Embryo DE 997 3 557 31 0 106 905 DCTN1,LOC100189589,WDR54,SLC4A5,RTKN,C2ORF81
SE_02_104701074 chr2:74397818-74432699 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1074 8 880 60 3 157 2442 WDR54,RTKN,C2ORF81,MOGS,DCTN1,DCTN1-AS1,WBP1,INO80B,MRPL53
SE_02_088601431 chr2:74405461-74427691 Sample_02_0886 Skin foreskin_ p63KLF4 1431 4 587 48 3 117 1773 WDR54,RTKN,C2ORF81,MOGS,DCTN1,DCTN1-AS1,WBP1,INO80B,MRPL53
SE_02_064700932 chr2:74405639-74427025 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 932 5 566 46 3 106 1669 WDR54,RTKN,C2ORF81,MOGS,DCTN1,DCTN1-AS1,WBP1,INO80B,MRPL53
SE_02_065900323 chr2:74420452-74443155 Sample_02_0659 Lung H23 323 11 569 29 1 197 2229 WDR54,RTKN,TTC31,MOGS,DCTN1,INO80B,DCTN1-AS1,C2ORF81,WBP1,CCDC142,MRPL53
SE_02_107300304 chr2:74421233-74442725 Sample_02_1073 Keratinocyte keratinocytes stem cell 304 3 551 27 1 197 2229 WDR54,RTKN,TTC31,MOGS,DCTN1,INO80B,DCTN1-AS1,C2ORF81,WBP1,CCDC142,MRPL53
SE_02_048000615 chr2:74421725-74442707 Sample_02_0480 Gingival epithelial HGEP 615 6 537 26 1 195 2188 WDR54,RTKN,TTC31,MOGS,DCTN1,INO80B,DCTN1-AS1,C2ORF81,WBP1,CCDC142,MRPL53
SE_02_047900575 chr2:74423207-74449670 Sample_02_0479 Head and neck SCC25 575 7 662 30 0 184 1931 WDR54,RTKN,TTC31,MOGS,DCTN1,INO80B,DCTN1-AS1,LBX2,C2ORF81,WBP1,CCDC142,MRPL53
SE_02_120200598 chr2:74423334-74442178 Sample_02_1202 Brain GBM38 598 8 475 21 0 176 1908 WDR54,RTKN,TTC31,MOGS,DCTN1,INO80B,DCTN1-AS1,C2ORF81,WBP1,CCDC142,MRPL53
SE_02_075500962 chr2:74424761-74453434 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 962 4 730 33 0 179 1723 WDR54,RTKN,TTC31,MOGS,DCTN1,LBX2,INO80B,DCTN1-AS1,C2ORF81,LBX2-AS1,WBP1,CCDC142,MRPL53
SE_02_101701868 chr2:74424813-74442990 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1868 4 461 22 0 170 1711 WDR54,RTKN,TTC31,MOGS,DCTN1,INO80B,DCTN1-AS1,C2ORF81,WBP1,CCDC142,MRPL53
SE_02_064600511 chr2:74424974-74442875 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 511 4 454 22 0 163 1678 WDR54,RTKN,TTC31,MOGS,DCTN1,INO80B,DCTN1-AS1,C2ORF81,WBP1,CCDC142,MRPL53
SE_02_136500659 chr2:74425260-74443017 Sample_02_1365 Pancreas AsPC1-untreated 659 4 444 22 0 151 1628 WDR54,RTKN,TTC31,MOGS,DCTN1,INO80B,DCTN1-AS1,C2ORF81,WBP1,CCDC142,MRPL53
SE_02_088400803 chr2:74429115-74448242 Sample_02_0884 Colon LoVo 803 4 457 23 0 105 985 RTKN,TTC31,MOGS,DCTN1,INO80B,DCTN1-AS1,C2ORF81,WBP1,CCDC142,WDR54,MRPL53
SE_02_103602316 chr2:74432835-74447163 Sample_02_1036 Mammary gland HCC70_XY018 2316 4 334 21 0 76 513 RTKN,TTC31,MOGS,INO80B,DCTN1-AS1,C2ORF81,DCTN1,WBP1,CCDC142,WDR54,MRPL53
SE_02_119600938 chr2:74435248-74442503 Sample_02_1196 Brain GBM32 938 3 160 10 0 72 512 RTKN,TTC31,MOGS,INO80B,DCTN1-AS1,C2ORF81,DCTN1,WBP1,CCDC142,WDR54,MRPL53
SE_02_121200155 chr2:74435344-74442459 Sample_02_1212 Brain GBM30 155 1 160 10 0 72 512 RTKN,TTC31,MOGS,INO80B,DCTN1-AS1,C2ORF81,DCTN1,WBP1,CCDC142,WDR54,MRPL53
SE_02_120301121 chr2:74435607-74442712 Sample_02_1203 Brain NB1 1121 2 160 11 0 72 512 RTKN,TTC31,MOGS,INO80B,DCTN1-AS1,C2ORF81,DCTN1,WBP1,CCDC142,WDR54,MRPL53
SE_02_120400910 chr2:74435691-74442543 Sample_02_1204 Brain NB2 910 2 152 10 0 71 512 RTKN,TTC31,MOGS,INO80B,DCTN1-AS1,C2ORF81,DCTN1,WBP1,CCDC142,WDR54,MRPL53
SE_02_117900437 chr2:74435763-74442504 Sample_02_1179 Brain GBM08 437 1 150 10 0 71 512 RTKN,TTC31,MOGS,INO80B,C2ORF81,DCTN1,WDR54,WBP1,CCDC142,MRPL53
SE_02_121100812 chr2:74436060-74441799 Sample_02_1211 Brain GBM21 812 3 126 8 0 57 418 RTKN,TTC31,MOGS,INO80B,C2ORF81,DCTN1,WDR54,WBP1,CCDC142,MRPL53
SE_02_118900656 chr2:74436599-74441777 Sample_02_1189 Brain GBM22 656 2 119 8 0 48 409 RTKN,TTC31,MOGS,INO80B,C2ORF81,DCTN1,WDR54,WBP1,CCDC142,MRPL53
SE_02_117300871 chr2:74437731-74442630 Sample_02_1173 Brain GBM01 871 1 115 7 0 57 512 RTKN,TTC31,MOGS,INO80B,C2ORF81,DCTN1,WDR54,WBP1,CCDC142,MRPL53
SE_02_108000924 chr2:74437903-74441366 Sample_02_1080 Muscle JR1 shCtrl 924 1 77 5 0 38 356 RTKN,TTC31,MOGS,INO80B,C2ORF81,DCTN1,WDR54,WBP1,CCDC142,MRPL53
SE_02_074100946 chr2:74438419-74441386 Sample_02_0741 Muscle RH30 946 1 63 2 0 38 356 RTKN,TTC31,MOGS,INO80B,C2ORF81,DCTN1,WDR54,WBP1,CCDC142,MRPL53
SE_02_064501318 chr2:74439246-74442735 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1318 1 81 4 0 58 512 RTKN,TTC31,MOGS,INO80B,C2ORF81,DCTN1,WDR54,WBP1,CCDC142,MRPL53
SE_02_049401244 chr2:74439433-74442827 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1244 1 81 4 0 58 497 RTKN,TTC31,MOGS,INO80B,C2ORF81,DCTN1,WDR54,WBP1,CCDC142,MRPL53
SE_02_055900741 chr2:74439548-74442731 Sample_02_0559 iPSCs FX52 iPSCs dC-T 741 1 77 4 0 58 470 RTKN,TTC31,MOGS,INO80B,C2ORF81,DCTN1,WDR54,WBP1,CCDC142,MRPL53
SE_01_010101360 chr2:74439600-74444294 Sample_01_0101 Pancreas pancreas_54y 1360 2 111 8 0 54 462 RTKN,TTC31,MOGS,INO80B,C2ORF81,DCTN1,WDR54,WBP1,CCDC142,MRPL53
SE_02_074800905 chr2:74439882-74443202 Sample_02_0748 Mammary gland HCC1599_WO 905 1 78 4 0 47 395 RTKN,TTC31,MOGS,INO80B,C2ORF81,DCTN1,WDR54,WBP1,CCDC142,MRPL53
SE_00_002700720 chr2:74451666-74466098 Sample_00_0027 Blood natural-killer-cell 720 3 369 16 1 189 1910 MOGS,WBP1,INO80B,TLX2,WDR54,CCDC142,TTC31,RTKN,MRPL53,LBX2,C2ORF81,PCGF1,LOC151534
SE_00_000900759 chr2:74451862-74466169 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 759 3 357 14 1 189 1910 MOGS,WBP1,INO80B,TLX2,WDR54,CCDC142,TTC31,RTKN,MRPL53,LBX2,C2ORF81,PCGF1,LOC151534
SE_01_008401524 chr2:74451946-74459578 Sample_01_0084 Spleen spleen 1524 2 182 5 0 74 758 WBP1,INO80B,WDR54,CCDC142,TTC31,RTKN,MOGS,MRPL53,LBX2,C2ORF81,PCGF1,LOC151534
SE_00_000800615 chr2:74453937-74466582 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 615 2 313 15 1 187 1910 MOGS,WBP1,INO80B,TLX2,WDR54,CCDC142,TTC31,RTKN,MRPL53,LBX2,C2ORF81,PCGF1,LOC151534
SE_02_061700995 chr2:74454183-74459850 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 995 1 136 5 0 74 812 INO80B-WBP1,WBP1,INO80B,TTC31,MOGS,LBX2,PCGF1,C2ORF81,RTKN,LBX2-AS1,WDR54,CCDC142,MRPL53
SE_02_004600521 chr2:74456722-74465894 Sample_02_0046 Embryo endodermal CyT49_ES_D10 521 3 232 11 1 161 1625 MOGS,WBP1,INO80B,TLX2,WDR54,CCDC142,TTC31,RTKN,MRPL53,LBX2,C2ORF81,PCGF1,LOC151534
SE_02_004500641 chr2:74456898-74465815 Sample_02_0045 Embryo endodermal CyT49_ES_D7 641 3 231 11 1 161 1625 MOGS,WBP1,INO80B,TLX2,WDR54,CCDC142,TTC31,RTKN,MRPL53,LBX2,C2ORF81,PCGF1,LOC151534
Genomic distribution of SEs associated with RTKN
Genome Browser

The strength of the tissue affected by the gene

Expression of RTKN

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)